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Gentoo's Bugzilla – Attachment 581952 Details for
Bug 689320
sci-libs/xdmf2-1.0_p141226-r3 fails to build
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build log
build.log (text/x-log), 8.90 KB, created by
Marco Clocchiatti
on 2019-07-05 11:25:10 UTC
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hide
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Description:
build log
Filename:
MIME Type:
Creator:
Marco Clocchiatti
Created:
2019-07-05 11:25:10 UTC
Size:
8.90 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/xdmf2-1.0_p141226-r3 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 elibc_glibc kernel_linux python python_targets_python2_7 userland_GNU >[32;01m * [39;49;00mFEATURES: network-sandbox preserve-libs sandbox splitdebug userpriv usersandbox >>>> Unpacking source... >>>> Unpacking xdmf2-1.0_p141226.tar.xz to /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work >>>> Source unpacked in /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work >>>> Preparing source in /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226 ... > [32;01m*[0m Applying xdmf2-1.0_p141226-module.patch ... >[A[160C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying xdmf2-1.0_p141226-cannot-find-hdf5-bug-591302.patch ... >[A[160C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying xdmf2-1.0_p141226-cmake-3.12.patch ... >[A[160C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226 ... >>>> Working in BUILD_DIR: "/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build" >cmake -C /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_SHARED_LIBS=1 -DXDMF_BUILD_DOCUMENTATION=no -DBUILD_TESTING=no -DXDMF_WRAP_PYTHON=yes -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build/gentoo_toolchain.cmake /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226 >loading initial cache file /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake >-- The C compiler identification is GNU 8.3.0 >-- The CXX compiler identification is GNU 8.3.0 >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found SWIG: /usr/bin/swig (found version "3.0.12") >-- Found PythonInterp: /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/temp/python2.7/bin/python (found version "2.7.15") >-- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.15") >-- Found Git: /usr/bin/git (found version "2.22.0") >-- Boost version: 1.65.0 >-- HDF5: Using hdf5 compiler wrapper to determine C configuration >-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.5") >-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.9") >-- Check if the system is big endian >-- Searching 16 bit integer >-- Looking for sys/types.h >-- Looking for sys/types.h - found >-- Looking for stdint.h >-- Looking for stdint.h - found >-- Looking for stddef.h >-- Looking for stddef.h - found >-- Check size of unsigned short >-- Check size of unsigned short - done >-- Using unsigned short >-- Check if the system is big endian - little endian >-- Performing Test HAVE_BOOST_SHARED_DYNAMIC_CAST >-- Performing Test HAVE_BOOST_SHARED_DYNAMIC_CAST - Failed >CMake Deprecation Warning at /usr/share/cmake/Modules/UseSWIG.cmake:559 (message): > SWIG_ADD_MODULE is deprecated. Use SWIG_ADD_LIBRARY instead. >Call Stack (most recent call first): > CMakeLists.txt:127 (swig_add_module) > core/CMakeLists.txt:147 (XDMF_SWIG_PYTHON) > > >CMake Warning (dev) at /usr/share/cmake/Modules/UseSWIG.cmake:600 (message): > Policy CMP0078 is not set: UseSWIG generates standard target names. Run > "cmake --help-policy CMP0078" for policy details. Use the cmake_policy > command to set the policy and suppress this warning. > >Call Stack (most recent call first): > /usr/share/cmake/Modules/UseSWIG.cmake:560 (swig_add_library) > CMakeLists.txt:127 (swig_add_module) > core/CMakeLists.txt:147 (XDMF_SWIG_PYTHON) >This warning is for project developers. Use -Wno-dev to suppress it. > >CMake Warning (dev) at /usr/share/cmake/Modules/UseSWIG.cmake:460 (message): > Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module > flag. Run "cmake --help-policy CMP0086" for policy details. Use the > cmake_policy command to set the policy and suppress this warning. > >Call Stack (most recent call first): > /usr/share/cmake/Modules/UseSWIG.cmake:695 (SWIG_ADD_SOURCE_TO_MODULE) > /usr/share/cmake/Modules/UseSWIG.cmake:560 (swig_add_library) > CMakeLists.txt:127 (swig_add_module) > core/CMakeLists.txt:147 (XDMF_SWIG_PYTHON) >This warning is for project developers. Use -Wno-dev to suppress it. > >CMake Deprecation Warning at /usr/share/cmake/Modules/UseSWIG.cmake:559 (message): > SWIG_ADD_MODULE is deprecated. Use SWIG_ADD_LIBRARY instead. >Call Stack (most recent call first): > CMakeLists.txt:127 (swig_add_module) > CMakeLists.txt:313 (XDMF_SWIG_PYTHON) > > >CMake Warning (dev) at /usr/share/cmake/Modules/UseSWIG.cmake:600 (message): > Policy CMP0078 is not set: UseSWIG generates standard target names. Run > "cmake --help-policy CMP0078" for policy details. Use the cmake_policy > command to set the policy and suppress this warning. > >Call Stack (most recent call first): > /usr/share/cmake/Modules/UseSWIG.cmake:560 (swig_add_library) > CMakeLists.txt:127 (swig_add_module) > CMakeLists.txt:313 (XDMF_SWIG_PYTHON) >This warning is for project developers. Use -Wno-dev to suppress it. > >CMake Warning (dev) at /usr/share/cmake/Modules/UseSWIG.cmake:460 (message): > Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module > flag. Run "cmake --help-policy CMP0086" for policy details. Use the > cmake_policy command to set the policy and suppress this warning. > >Call Stack (most recent call first): > /usr/share/cmake/Modules/UseSWIG.cmake:695 (SWIG_ADD_SOURCE_TO_MODULE) > /usr/share/cmake/Modules/UseSWIG.cmake:560 (swig_add_library) > CMakeLists.txt:127 (swig_add_module) > CMakeLists.txt:313 (XDMF_SWIG_PYTHON) >This warning is for project developers. Use -Wno-dev to suppress it. > >CMake Warning (dev) at CMake/XdmfFunctions.cmake:5 (if): > Policy CMP0054 is not set: Only interpret if() arguments as variables or > keywords when unquoted. Run "cmake --help-policy CMP0054" for policy > details. Use the cmake_policy command to set the policy and suppress this > warning. > > Quoted variables like "lib" will no longer be dereferenced when the policy > is set to NEW. Since the policy is not set the OLD behavior will be used. >Call Stack (most recent call first): > CMakeLists.txt:352 (xdmf_create_config_file) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C -march=broadwell -mtune=broadwell -O2 >C++ -march=broadwell -mtune=broadwell -O2 -std=c++14 >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu >Module -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu >Shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu > >-- Configuring done >CMake Error at CMakeLists.txt:135 (add_dependencies): > The dependency target "XdmfCore;XdmfDSM" of target "Xdmf" does not exist. >Call Stack (most recent call first): > CMakeLists.txt:313 (XDMF_SWIG_PYTHON) > > >-- Generating done >-- Build files have been written to: /tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build > [31;01m*[0m ERROR: sci-libs/xdmf2-1.0_p141226-r3::gentoo failed (configure phase): > [31;01m*[0m cmake failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 124: Called src_configure > [31;01m*[0m environment, line 3864: Called cmake-utils_src_configure > [31;01m*[0m environment, line 1069: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/xdmf2-1.0_p141226-r3::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/xdmf2-1.0_p141226-r3::gentoo'`. > [31;01m*[0m The complete build log is located at '/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/temp/environment'. > [31;01m*[0m Working directory: '/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226_build' > [31;01m*[0m S: '/tmp/ramtmp/.lnv/portage/sci-libs/xdmf2-1.0_p141226-r3/work/xdmf2-1.0_p141226'
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bug 689320
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