* Package: sci-chemistry/namd-2.10  * Repository: gentoo  * Maintainer: nicolasbock@gentoo.org sci-chemistry@gentoo.org  * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU  * FEATURES: ccache network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking NAMD_2.10_Source.tar.gz to /var/tmp/portage/sci-chemistry/namd-2.10/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/namd-2.10/work >>> Preparing source in /var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source ... * Applying namd-2.10-gentoo.patch ...  [ ok ] * Applying namd-2.7-iml-dec.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source ... Selected arch file arch/Linux-x86_64-g++.arch contains: NAMD_ARCH = Linux-x86_64 CHARMARCH = multicore-linux64 CXX = x86_64-pc-linux-gnu-g++ CXXOPTS = -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed CC = x86_64-pc-linux-gnu-gcc COPTS = -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed Creating directory: Linux-x86_64-g++ Creating link: .. to .rootdir Writing build options to Linux-x86_64-g++/Make.config Using Charm++ build found in Make.charm: /usr/bin/charm-6.8.2 Warning: No such directory /usr/bin/charm-6.8.2/. Linking Makefile Linking Make.depends Linking src directory Linking plugins directory Linking psfgen directory Generated Linux-x86_64-g++/Make.config contains the following: include .rootdir/Make.charm include .rootdir/arch/Linux-x86_64-g++.arch CHARMARCH = . CHARM = $(CHARMBASE)/$(CHARMARCH) NAMD_PLATFORM = $(NAMD_ARCH) include .rootdir/arch/$(NAMD_ARCH).base include .rootdir/arch/$(NAMD_ARCH).tcl include .rootdir/arch/$(NAMD_ARCH).fftw3 You are ready to run make in directory Linux-x86_64-g++ now. >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source ... make -j1 if [ ! -d inc ]; then mkdir -p inc; fi if [ ! -f inc/.exists ]; then touch inc/.exists; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -f obj/.exists ]; then touch obj/.exists; fi cp src/Node.ci inc /usr/bin/charmc inc/Node.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/Node.ci mv Node.def.h inc mv Node.decl.h inc cp src/PatchMgr.ci inc /usr/bin/charmc inc/PatchMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/PatchMgr.ci mv PatchMgr.def.h inc mv PatchMgr.decl.h inc cp src/ComputeMoaMgr.ci inc /usr/bin/charmc inc/ComputeMoaMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeMoaMgr.ci mv ComputeMoaMgr.def.h inc mv ComputeMoaMgr.decl.h inc cp src/ComputeMgr.ci inc /usr/bin/charmc inc/ComputeMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeMgr.ci mv ComputeMgr.def.h inc mv ComputeMgr.decl.h inc cp src/WorkDistrib.ci inc /usr/bin/charmc inc/WorkDistrib.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/WorkDistrib.ci mv WorkDistrib.def.h inc mv WorkDistrib.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMoa.o -c src/ComputeMoa.C cp src/ComputeMsmMgr.ci inc /usr/bin/charmc inc/ComputeMsmMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeMsmMgr.ci mv ComputeMsmMgr.def.h inc mv ComputeMsmMgr.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMsm.o -c src/ComputeMsm.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMsmMsa.o -c src/ComputeMsmMsa.C cp src/ComputeMsmSerialMgr.ci inc /usr/bin/charmc inc/ComputeMsmSerialMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeMsmSerialMgr.ci mv ComputeMsmSerialMgr.def.h inc mv ComputeMsmSerialMgr.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMsmSerial.o -c src/ComputeMsmSerial.C cp src/ComputeFmmSerialMgr.ci inc /usr/bin/charmc inc/ComputeFmmSerialMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeFmmSerialMgr.ci mv ComputeFmmSerialMgr.def.h inc mv ComputeFmmSerialMgr.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeFmmSerial.o -c src/ComputeFmmSerial.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm.o -c src/msm.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm_longrng.o -c src/msm_longrng.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm_longrng_sprec.o -c src/msm_longrng_sprec.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm_setup.o -c src/msm_setup.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm_shortrng.o -c src/msm_shortrng.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/msm_shortrng_sprec.o -c src/msm_shortrng_sprec.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/wkfutils.o -c src/wkfutils.c x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/common.o -c src/common.C src/common.C: In function ‘void NAMD_err(const char*)’: src/common.C:100:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if ( ! sys_err_msg ) sys_err_msg = "(unknown error)"; ^~~~~~~~~~~~~~~~~ src/common.C: In function ‘int NAMD_file_exists(const char*)’: src/common.C:137:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if ( ! sys_err_msg ) sys_err_msg = "(unknown error)"; ^~~~~~~~~~~~~~~~~ src/common.C: In function ‘void NAMD_backup_file(const char*, const char*)’: src/common.C:166:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if ( ! sys_err_msg ) sys_err_msg = "(unknown error)"; ^~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/dcdlib.o -c src/dcdlib.C src/dcdlib.C: In function ‘off_t NAMD_seek(int, off_t, int)’: src/dcdlib.C:49:18: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 3 has type ‘off_t’ {aka ‘long int’} [-Wformat=] sprintf(buf, "seek failed while writing DCD file: SEEK_SET %lld returned %lld\n", offset, retval); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ src/dcdlib.C:49:18: warning: format ‘%lld’ expects argument of type ‘long long int’, but argument 4 has type ‘off_t’ {aka ‘long int’} [-Wformat=] src/dcdlib.C: In function ‘int write_dcdstep(int, int, float*, float*, float*, double*)’: src/dcdlib.C:756:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NSAVC,sizeof(int32)); ^ src/dcdlib.C:758:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NSTEP,sizeof(int32)); ^ src/dcdlib.C:760:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NFILE,sizeof(int32)); ^ src/dcdlib.C: In function ‘int update_dcdstep_par_header(int)’: src/dcdlib.C:827:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NSAVC,sizeof(int32)); ^ src/dcdlib.C:829:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NSTEP,sizeof(int32)); ^ src/dcdlib.C:831:6: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] READ(fd,(void*) &NFILE,sizeof(int32)); ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/erf.o -c src/erf.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/fitrms.o -c src/fitrms.C cp src/main.ci inc /usr/bin/charmc inc/main.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? Charmxi> 4: Deprecation warning: mainchare constructors should explicitly take CkArgMsg* if that's how they're implemented. rm -f inc/main.ci mv main.def.h inc mv main.decl.h inc cp src/ReductionMgr.ci inc /usr/bin/charmc inc/ReductionMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ReductionMgr.ci mv ReductionMgr.def.h inc mv ReductionMgr.decl.h inc cp src/ProxyMgr.ci inc /usr/bin/charmc inc/ProxyMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ProxyMgr.ci mv ProxyMgr.def.h inc mv ProxyMgr.decl.h inc cp src/LdbCoordinator.ci inc /usr/bin/charmc inc/LdbCoordinator.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/LdbCoordinator.ci mv LdbCoordinator.def.h inc mv LdbCoordinator.decl.h inc cp src/NamdCentLB.ci inc /usr/bin/charmc inc/NamdCentLB.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/NamdCentLB.ci mv NamdCentLB.def.h inc mv NamdCentLB.decl.h inc cp src/NamdNborLB.ci inc /usr/bin/charmc inc/NamdNborLB.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/NamdNborLB.ci mv NamdNborLB.def.h inc mv NamdNborLB.decl.h inc cp src/NamdHybridLB.ci inc /usr/bin/charmc inc/NamdHybridLB.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/NamdHybridLB.ci mv NamdHybridLB.def.h inc mv NamdHybridLB.decl.h inc cp src/NamdDummyLB.ci inc /usr/bin/charmc inc/NamdDummyLB.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/NamdDummyLB.ci mv NamdDummyLB.def.h inc mv NamdDummyLB.decl.h inc cp src/ComputePmeMgr.ci inc /usr/bin/charmc inc/ComputePmeMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputePmeMgr.ci mv ComputePmeMgr.def.h inc mv ComputePmeMgr.decl.h inc cp src/OptPme.ci inc /usr/bin/charmc inc/OptPme.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/OptPme.ci mv OptPmeMgr.def.h inc mv OptPmeMgr.decl.h inc cp src/fftlib.ci inc /usr/bin/charmc inc/fftlib.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/fftlib.ci mv PmeFFTLib.def.h inc mv PmeFFTLib.decl.h inc cp src/ComputeExtMgr.ci inc /usr/bin/charmc inc/ComputeExtMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeExtMgr.ci mv ComputeExtMgr.def.h inc mv ComputeExtMgr.decl.h inc cp src/ComputeGBISserMgr.ci inc /usr/bin/charmc inc/ComputeGBISserMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeGBISserMgr.ci mv ComputeGBISserMgr.def.h inc mv ComputeGBISserMgr.decl.h inc cp src/CollectionMgr.ci inc /usr/bin/charmc inc/CollectionMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/CollectionMgr.ci mv CollectionMgr.def.h inc mv CollectionMgr.decl.h inc cp src/CollectionMaster.ci inc /usr/bin/charmc inc/CollectionMaster.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/CollectionMaster.ci mv CollectionMaster.def.h inc mv CollectionMaster.decl.h inc cp src/BroadcastMgr.ci inc /usr/bin/charmc inc/BroadcastMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/BroadcastMgr.ci mv BroadcastMgr.def.h inc mv BroadcastMgr.decl.h inc cp src/Sync.ci inc /usr/bin/charmc inc/Sync.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/Sync.ci mv Sync.def.h inc mv Sync.decl.h inc cp src/ParallelIOMgr.ci inc /usr/bin/charmc inc/ParallelIOMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ParallelIOMgr.ci mv ParallelIOMgr.def.h inc mv ParallelIOMgr.decl.h inc cp src/DataExchanger.ci inc /usr/bin/charmc inc/DataExchanger.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/DataExchanger.ci mv DataExchanger.def.h inc mv DataExchanger.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/main.o -c src/main.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/mainfunc.o -c src/mainfunc.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/memusage.o -c src/memusage.C src/memusage.C: In function ‘long unsigned int memusage_proc_self_stat()’: src/memusage.C:138:36: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] for ( int i=0; i<22; ++i ) fscanf(f,"%*s"); ~~~~~~^~~~~~~~~ src/memusage.C:144:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(f,"%lu",&vsz); ~~~~~~^~~~~~~~~~~~~~ src/memusage.C: In function ‘long unsigned int memusage_ps()’: src/memusage.C:97:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(p, "%ld", &vsz); ~~~~~~^~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/strlib.o -c src/strlib.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/AlgSeven.o -c src/AlgSeven.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/AlgRecBisection.o -c src/AlgRecBisection.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/AlgNbor.o -c src/AlgNbor.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/AtomMap.o -c src/AtomMap.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/BackEnd.o -c src/BackEnd.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/BroadcastMgr.o -c src/BroadcastMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/BroadcastClient.o -c src/BroadcastClient.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/CollectionMaster.o -c src/CollectionMaster.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/CollectionMgr.o -c src/CollectionMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Communicate.o -c src/Communicate.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Compute.o -c src/Compute.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeAngles.o -c src/ComputeAngles.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeAniso.o -c src/ComputeAniso.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeBonds.o -c src/ComputeBonds.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeConsForce.o -c src/ComputeConsForce.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeConsForceMsgs.o -c src/ComputeConsForceMsgs.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeCrossterms.o -c src/ComputeCrossterms.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeCylindricalBC.o -c src/ComputeCylindricalBC.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeDihedrals.o -c src/ComputeDihedrals.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeDPME.o -c src/ComputeDPME.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeDPMEMsgs.o -c src/ComputeDPMEMsgs.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeDPMTA.o -c src/ComputeDPMTA.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeEField.o -c src/ComputeEField.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeEwald.o -c src/ComputeEwald.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeExt.o -c src/ComputeExt.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGBISser.o -c src/ComputeGBISser.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGBIS.o -c src/ComputeGBIS.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGromacsPair.o -c src/ComputeGromacsPair.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeLCPO.o -c src/ComputeLCPO.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeFullDirect.o -c src/ComputeFullDirect.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeHomePatch.o -c src/ComputeHomePatch.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeHomePatches.o -c src/ComputeHomePatches.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeImpropers.o -c src/ComputeImpropers.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGlobal.o -c src/ComputeGlobal.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGlobalMsgs.o -c src/ComputeGlobalMsgs.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeGridForce.o -c src/ComputeGridForce.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMap.o -c src/ComputeMap.C src/ComputeMap.C: In member function ‘void ComputeMap::printComputeMap()’: src/ComputeMap.C:232:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] fname = "computeMap.orig"; ^~~~~~~~~~~~~~~~~ src/ComputeMap.C: In member function ‘void ComputeMap::loadComputeMap(const char*)’: src/ComputeMap.C:283:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d\n", &n); ~~~~~~^~~~~~~~~~~~~~~~ src/ComputeMap.C:287:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d\n", &computeData[i].node); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeMgr.o -c src/ComputeMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedSelf.o -c src/ComputeNonbondedSelf.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedPair.o -c src/ComputeNonbondedPair.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedUtil.o -c src/ComputeNonbondedUtil.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedStd.o -c src/ComputeNonbondedStd.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedFEP.o -c src/ComputeNonbondedFEP.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedGo.o -c src/ComputeNonbondedGo.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedTI.o -c src/ComputeNonbondedTI.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedLES.o -c src/ComputeNonbondedLES.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedPProf.o -c src/ComputeNonbondedPProf.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedTabEnergies.o -c src/ComputeNonbondedTabEnergies.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedCUDA.o -c src/ComputeNonbondedCUDA.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedCUDAExcl.o -c src/ComputeNonbondedCUDAExcl.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedMIC.o -c src/ComputeNonbondedMIC.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeNonbondedMICKernel.o -c src/ComputeNonbondedMICKernel.C In file included from src/ComputeNonbondedMICKernelBase2.h:218, from src/ComputeNonbondedMICKernelBase.h:1555, from src/ComputeNonbondedMICKernel.C:2645: src/ComputeNonbondedMICKernelBase2_handcode_single.h:1502:86: warning: backslash and newline separated by space pExt_1[tmpJ32[idx]].excl_index, indexDiff, maxDiff, offset, flags \ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputePatch.o -c src/ComputePatch.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputePatchPair.o -c src/ComputePatchPair.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputePme.o -c src/ComputePme.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/OptPme.o -c src/OptPme.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/OptPmeRealSpace.o -c src/OptPmeRealSpace.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeRestraints.o -c src/ComputeRestraints.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeSphericalBC.o -c src/ComputeSphericalBC.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeStir.o -c src/ComputeStir.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeTclBC.o -c src/ComputeTclBC.C src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_wrapmode(ClientData, Tcl_Interp*, int, char**)’: src/ComputeTclBC.C:145:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] TCL_VOLATILE); ^ src/ComputeTclBC.C:156:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_cleardrops(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:166:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_dropatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:179:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:184:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_nextatom(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:196:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_getcoord(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:236:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:241:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_getcell(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:272:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_getmass(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:315:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:320:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_getcharge(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:332:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:337:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_getid(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:349:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:354:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:366:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:378:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE); ^ src/ComputeTclBC.C:384:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no atom available",TCL_VOLATILE); ^ src/ComputeTclBC.C: In static member function ‘static int ComputeTclBC::Tcl_addenergy(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/ComputeTclBC.C:398:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ComputeTclBC.C:404:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"energy not a number",TCL_VOLATILE); ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ComputeThole.o -c src/ComputeThole.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ConfigList.o -c src/ConfigList.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Controller.o -c src/Controller.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ccsinterface.o -c src/ccsinterface.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/DataStream.o -c src/DataStream.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/DumpBench.o -c src/DumpBench.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyAssert.o -c src/FreeEnergyAssert.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyGroup.o -c src/FreeEnergyGroup.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyLambda.o -c src/FreeEnergyLambda.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyLambdMgr.o -c src/FreeEnergyLambdMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyParse.o -c src/FreeEnergyParse.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyRestrain.o -c src/FreeEnergyRestrain.C src/FreeEnergyRestrain.C: In member function ‘void ARestraint::DistributeForce(int, AVector, GlobalMasterFreeEnergy&)’: src/FreeEnergyRestrain.C:205:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (Mass < 0) {EarlyExit("Negative Mass", AtomID);}; ^ src/FreeEnergyRestrain.C:213:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (Mass < 0) {EarlyExit("Negative Mass", AtomID);} ^ src/FreeEnergyRestrain.C:218:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (RetVal < 0) {EarlyExit("Can't add Force", AtomID);} ^ src/FreeEnergyRestrain.C: In member function ‘void ARestraint::UpdateCOMs(GlobalMasterFreeEnergy&)’: src/FreeEnergyRestrain.C:247:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (RetVal < 0) {EarlyExit("Can't get Position", AtomID);} ^ src/FreeEnergyRestrain.C:251:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (Mass < 0) {EarlyExit("Negative Mass", AtomID);} ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyRMgr.o -c src/FreeEnergyRMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/FreeEnergyVector.o -c src/FreeEnergyVector.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/fstream_namd.o -c src/fstream_namd.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMaster.o -c src/GlobalMaster.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterServer.o -c src/GlobalMasterServer.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterTest.o -c src/GlobalMasterTest.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterIMD.o -c src/GlobalMasterIMD.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterTcl.o -c src/GlobalMasterTcl.C src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_atomid(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:44:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C:58:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"atom not found",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_addatom(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:74:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_addgroup(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:100:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_reconfig(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:150:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_clearconfig(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:163:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_getstep(ClientData, Tcl_Interp*, int, char**)’: src/GlobalMasterTcl.C:179:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_loadforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/GlobalMasterTcl.C:193:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_loadtotalforces(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/GlobalMasterTcl.C:265:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_loadcoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/GlobalMasterTcl.C:307:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_loadmasses(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/GlobalMasterTcl.C:365:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C: In static member function ‘static int GlobalMasterTcl::Tcl_addforce(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/GlobalMasterTcl.C:410:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/GlobalMasterTcl.C:429:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"force not a vector",TCL_VOLATILE); ^ src/GlobalMasterTcl.C:437:72: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"requested group not available",TCL_VOLATILE); ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterSMD.o -c src/GlobalMasterSMD.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterTMD.o -c src/GlobalMasterTMD.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Matrix4Symmetry.o -c src/Matrix4Symmetry.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterSymmetry.o -c src/GlobalMasterSymmetry.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterFreeEnergy.o -c src/GlobalMasterFreeEnergy.C src/GlobalMasterFreeEnergy.C: In member function ‘void GlobalMasterFreeEnergy::initialize()’: src/GlobalMasterFreeEnergy.C:241:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(new_config,sizeof(char),add_len,infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterEasy.o -c src/GlobalMasterEasy.C src/GlobalMasterEasy.C: In member function ‘void GlobalMasterEasy::initialize()’: src/GlobalMasterEasy.C:146:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(new_config,sizeof(char),add_len,infile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GlobalMasterMisc.o -c src/GlobalMasterMisc.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvar.o -c src/colvar.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvaratoms.o -c src/colvaratoms.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarbias.o -c src/colvarbias.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarbias_abf.o -c src/colvarbias_abf.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarbias_alb.o -c src/colvarbias_alb.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarbias_meta.o -c src/colvarbias_meta.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarbias_restraint.o -c src/colvarbias_restraint.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp.o -c src/colvarcomp.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp_angles.o -c src/colvarcomp_angles.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp_coordnums.o -c src/colvarcomp_coordnums.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp_distances.o -c src/colvarcomp_distances.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp_protein.o -c src/colvarcomp_protein.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarcomp_rotations.o -c src/colvarcomp_rotations.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvargrid.o -c src/colvargrid.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarmodule.o -c src/colvarmodule.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarparse.o -c src/colvarparse.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarproxy_namd.o -c src/colvarproxy_namd.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarscript.o -c src/colvarscript.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvartypes.o -c src/colvartypes.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/colvarvalue.o -c src/colvarvalue.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GridForceGrid.o -c src/GridForceGrid.C src/GridForceGrid.C: In member function ‘void GridforceFullBaseGrid::readHeader(SimParameters*, MGridforceParams*)’: src/GridForceGrid.C:275:20: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] fscanf(poten_fp, "object %*d class gridconnections counts %*lf %*lf %*lf\n"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:275:20: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] src/GridForceGrid.C:275:20: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=] src/GridForceGrid.C:252:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 256, poten_fp); // Read comment lines ~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:258:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "object %*d class gridpositions counts %d %d %d\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &k_nopad[0], &k_nopad[1], &k_nopad[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:263:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "origin %lf %lf %lf\n", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &origin.x, &origin.y, &origin.z); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:268:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "delta %lf %lf %lf\n", &e.xx, &e.yx, &e.zx); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:269:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "delta %lf %lf %lf\n", &e.xy, &e.yy, &e.zy); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:270:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "delta %lf %lf %lf\n", &e.xz, &e.yz, &e.zz); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:275:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "object %*d class gridconnections counts %*lf %*lf %*lf\n"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:276:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "object %*d class array type double rank 0 items %*d data follows\n"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C: In member function ‘void GridforceFullMainGrid::initialize(char*, SimParameters*, MGridforceParams*, int)’: src/GridForceGrid.C:443:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 256, poten_fp); // Read comment lines ~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:452:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "# namdnugrid maingrid subgrids count %d\n", &numSubgrids); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:480:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "\n"); ~~~~~~^~~~~~~~~~~~~~~~ src/GridForceGrid.C: In member function ‘void GridforceFullSubGrid::initialize(SimParameters*, MGridforceParams*)’: src/GridForceGrid.C:913:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "%s", str); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:914:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 256, poten_fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:921:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "object"); ~~~~~~^~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:936:8: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "%s", str); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:937:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, 256, poten_fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~ src/GridForceGrid.C:1066:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(poten_fp, "\n"); ~~~~~~^~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GromacsTopFile.o -c src/GromacsTopFile.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/heap.o -c src/heap.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/HomePatch.o -c src/HomePatch.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/IMDOutput.o -c src/IMDOutput.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/InfoStream.o -c src/InfoStream.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/LdbCoordinator.o -c src/LdbCoordinator.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/LJTable.o -c src/LJTable.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Measure.o -c src/Measure.C src/Measure.C: In function ‘int Tcl_loadCoords(ClientData, Tcl_Interp*, int, Tcl_Obj* const*)’: src/Measure.C:114:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"loadCoords: wrong # args",TCL_VOLATILE); ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/MGridforceParams.o -c src/MGridforceParams.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/MStream.o -c src/MStream.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/MigrateAtomsMsg.o -c src/MigrateAtomsMsg.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Molecule.o -c src/Molecule.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Molecule2.o -c src/Molecule2.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/GoMolecule.o -c src/GoMolecule.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdCentLB.o -c src/NamdCentLB.C src/NamdCentLB.C: In member function ‘void NamdCentLB::loadDataASCII(char*, int&, int&, int&)’: src/NamdCentLB.C:390:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %d %d",&numProcessors,&numPatches,&numComputes); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:404:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %le %le %le", &p->Id, &p->load, &p->backgroundLoad, &p->computeLoad); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:405:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%le\n", &p->idleTime); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:412:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %le %d %d\n",&p->Id,&p->load,&p->processor,&p->numAtoms); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:419:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %le %d %d %d %d",&c->Id,&c->load,&c->patch1,&c->patch2, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &c->processor,&c->oldProcessor); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:430:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %d: ",&curp, &num); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&id); ~~~~~~^~~~~~~~~~~~~ src/NamdCentLB.C:442:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d %d: ",&curp, &num); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/NamdCentLB.C:447:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fp,"%d",&id); ~~~~~~^~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdNborLB.o -c src/NamdNborLB.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdHybridLB.o -c src/NamdHybridLB.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdDummyLB.o -c src/NamdDummyLB.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdState.o -c src/NamdState.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/NamdOneTools.o -c src/NamdOneTools.C cp src/ComputeGridForceMgr.ci inc /usr/bin/charmc inc/ComputeGridForceMgr.ci x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? rm -f inc/ComputeGridForceMgr.ci mv ComputeGridForceMgr.def.h inc mv ComputeGridForceMgr.decl.h inc x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Node.o -c src/Node.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Output.o -c src/Output.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Parameters.o -c src/Parameters.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ParseOptions.o -c src/ParseOptions.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Patch.o -c src/Patch.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PatchMgr.o -c src/PatchMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PatchMap.o -c src/PatchMap.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PDB.o -c src/PDB.C src/PDB.C: In constructor ‘PDB::PDB(const char*, Ambertoppar*)’: src/PDB.C:561:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(infile,"%d",&atomCount); // Read in num of atoms ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/PDB.C: In constructor ‘PDB::PDB(const char*, const GromacsTopFile*)’: src/PDB.C:634:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,LINESIZE-1,infile); // get the title ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/PDB.C:638:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,LINESIZE-1,infile); // get the number of atoms ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/PDB.C:679:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,LINESIZE-1,infile); // get a line ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PDBData.o -c src/PDBData.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PmeKSpace.o -c src/PmeKSpace.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PmeRealSpace.o -c src/PmeRealSpace.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ProcessorPrivate.o -c src/ProcessorPrivate.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ProxyMgr.o -c src/ProxyMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ProxyPatch.o -c src/ProxyPatch.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Rebalancer.o -c src/Rebalancer.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/RecBisection.o -c src/RecBisection.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ReductionMgr.o -c src/ReductionMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/RefineOnly.o -c src/RefineOnly.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/RefineTorusLB.o -c src/RefineTorusLB.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ScriptTcl.o -c src/ScriptTcl.C src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_numPes(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:165:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_numNodes(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:174:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_numPhysicalNodes(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:183:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_numReplicas(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:192:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_myReplica(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:201:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaSendrecv(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:211:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"args: data dest ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaSend(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:240:56: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"args: data dest",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaRecv(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:253:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"args: source",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaBarrier(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:274:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"no arguments needed",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaAtomSendrecv(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:287:95: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE); ^ src/ScriptTcl.C:291:75: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad arg count; args: dest ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C:296:70: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad dest; args: dest ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C:302:74: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad source; args: dest ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaAtomSend(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:345:95: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE); ^ src/ScriptTcl.C:349:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad arg count; args: dest",TCL_VOLATILE); ^ src/ScriptTcl.C:354:61: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad dest; args: dest",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_replicaAtomRecv(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:382:95: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"replicaUniformPatchGrids is required for atom exchange",TCL_VOLATILE); ^ src/ScriptTcl.C:386:70: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad arg count; args: ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C:392:69: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bad source; args: ?source?",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_stdout(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:429:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_config(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:505:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE); ^ src/ScriptTcl.C:520:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"error parsing config file",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_isset_config(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:530:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_istrue_config(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:557:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:565:67: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE); ^ src/ScriptTcl.C:570:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter value is not boolean",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_istrue_param(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:580:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:588:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE); ^ src/ScriptTcl.C:592:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter is not boolean",TCL_VOLATILE); ^ src/ScriptTcl.C:596:67: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter value is not set",TCL_VOLATILE); ^ src/ScriptTcl.C:600:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"bug in Tcl_istrue_param",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_isset_param(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:610:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:618:58: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_param(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:628:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:634:64: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter name too long",TCL_VOLATILE); ^ src/ScriptTcl.C:646:60: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"unknown parameter",TCL_VOLATILE); ^ src/ScriptTcl.C:655:65: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"parameter value too long",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_reinitvels(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:674:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_rescalevels(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:691:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_run(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:708:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"too few args",TCL_VOLATILE); ^ src/ScriptTcl.C:712:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"too many args",TCL_VOLATILE); ^ src/ScriptTcl.C:721:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] "first arg not norepeat",TCL_VOLATILE); ^ src/ScriptTcl.C:731:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE); ^ src/ScriptTcl.C:736:90: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE); ^ src/ScriptTcl.C:740:92: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_minimize(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:766:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:774:77: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"number of steps must be non-negative",TCL_VOLATILE); ^ src/ScriptTcl.C:779:90: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"firstTimestep must be a multiple of stepsPerCycle",TCL_VOLATILE); ^ src/ScriptTcl.C:783:92: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"number of steps must be a multiple of stepsPerCycle",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_moveallby(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:808:55: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp, "wrong # args", TCL_VOLATILE); ^ src/ScriptTcl.C:820:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"argument not a vector",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_move(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:839:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:847:82: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"syntax is 'move to|by { }'",TCL_VOLATILE); ^ src/ScriptTcl.C:857:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"third argument not a vector",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_output(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:885:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"too few args",TCL_VOLATILE); ^ src/ScriptTcl.C:889:54: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"too many args",TCL_VOLATILE); ^ src/ScriptTcl.C:894:59: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"file name too long",TCL_VOLATILE); ^ src/ScriptTcl.C:907:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] "first arg not withforces or onlyforces",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_measure(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:946:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_colvarbias(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:973:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:978:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE); ^ src/ScriptTcl.C:990:82: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"energydiff requires a previous timestep",TCL_VOLATILE); ^ src/ScriptTcl.C:1002:69: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"unknown colvarbias operation",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_colvarvalue(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1015:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:1020:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_colvarfreq(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1066:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C:1071:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_colvars(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1088:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"colvars module not active",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_checkpoint(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1113:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_revert(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1127:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_callback(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1140:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ src/ScriptTcl.C: In static member function ‘static int ScriptTcl::Tcl_reinitatoms(ClientData, Tcl_Interp*, int, char**)’: src/ScriptTcl.C:1174:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] Tcl_SetResult(interp,"wrong # args",TCL_VOLATILE); ^ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Sequencer.o -c src/Sequencer.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Set.o -c src/Set.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Settle.o -c src/Settle.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/SimParameters.o -c src/SimParameters.C src/SimParameters.C: In member function ‘void SimParameters::print_config(ParseOptions&, ConfigList*, char*&)’: src/SimParameters.C:5384:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case CUBIC: approx_str = "C1 CUBIC"; break; ^~~~~~~~~~ src/SimParameters.C:5385:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case QUINTIC: approx_str = "C1 QUINTIC"; break; ^~~~~~~~~~~~ src/SimParameters.C:5386:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case QUINTIC2: approx_str = "C2 QUINTIC"; break; ^~~~~~~~~~~~ src/SimParameters.C:5387:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case SEPTIC: approx_str = "C1 SEPTIC"; break; ^~~~~~~~~~~ src/SimParameters.C:5388:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case SEPTIC3: approx_str = "C3 SEPTIC"; break; ^~~~~~~~~~~ src/SimParameters.C:5389:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case NONIC: approx_str = "C1 NONIC"; break; ^~~~~~~~~~ src/SimParameters.C:5390:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case NONIC4: approx_str = "C4 NONIC"; break; ^~~~~~~~~~ src/SimParameters.C:5391:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case C1HERMITE:approx_str = "C1 HERMITE"; break; ^~~~~~~~~~~~ src/SimParameters.C:5392:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] default: approx_str = "UNKNOWN"; break; ^~~~~~~~~ src/SimParameters.C:5395:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR2: split_str = "C2 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5396:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR3: split_str = "C3 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5397:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR4: split_str = "C4 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5398:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR5: split_str = "C5 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5399:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR6: split_str = "C6 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5400:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR7: split_str = "C7 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5401:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] case TAYLOR8: split_str = "C8 TAYLOR"; break; ^~~~~~~~~~~ src/SimParameters.C:5402:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] default: split_str = "UNKNOWN"; break; ^~~~~~~~~ In file included from src/SimParameters.h:21, from src/GridForceGrid.h:14, from src/Molecule.h:31, from src/ComputeNonbondedUtil.h:16, from src/SimParameters.C:21: src/SimParameters.C: In member function ‘void SimParameters::parse_mgrid_params(ConfigList*)’: src/MGridforceParams.h:18:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] #define MGRIDFORCEPARAMS_DEFAULTKEY "BaseGridForceParams" ^~~~~~~~~~~~~~~~~~~~~ src/SimParameters.C:5637:25: note: in expansion of macro ‘MGRIDFORCEPARAMS_DEFAULTKEY’ char *default_key = MGRIDFORCEPARAMS_DEFAULTKEY; ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/SimParameters.C: In member function ‘void SimParameters::print_mgrid_params()’: src/SimParameters.C:6054:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char *qcol_msg = "Use atom charge"; ^~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/SortAtoms.o -c src/SortAtoms.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/Sync.o -c src/Sync.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/TclCommands.o -c src/TclCommands.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/TorusLB.o -c src/TorusLB.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/WorkDistrib.o -c src/WorkDistrib.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/pub3dfft.o -c src/pub3dfft.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/vmdsock.o -c src/vmdsock.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/parm.o -c src/parm.C src/parm.C: In member function ‘int parm::readparm(char*)’: src/parm.C:184:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"TITLE")) ^ src/parm.C:194:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"POINTERS")) ^ src/parm.C:318:31: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"ATOM_NAME")) ^ src/parm.C:332:28: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"CHARGE")) ^ src/parm.C:350:26: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"MASS")) ^ src/parm.C:368:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"ATOM_TYPE_INDEX")) ^ src/parm.C:389:44: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"NUMBER_EXCLUDED_ATOMS")) ^ src/parm.C:410:43: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"NONBONDED_PARM_INDEX")) ^ src/parm.C:431:35: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"RESIDUE_LABEL")) ^ src/parm.C:443:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"RESIDUE_POINTER")) ^ src/parm.C:465:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"BOND_FORCE_CONSTANT")) ^ src/parm.C:483:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"BOND_EQUIL_VALUE")) ^ src/parm.C:501:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"ANGLE_FORCE_CONSTANT")) ^ src/parm.C:519:39: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"ANGLE_EQUIL_VALUE")) ^ src/parm.C:537:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"DIHEDRAL_FORCE_CONSTANT")) ^ src/parm.C:555:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"DIHEDRAL_PERIODICITY")) ^ src/parm.C:573:36: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"DIHEDRAL_PHASE")) ^ src/parm.C:591:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"SOLTY")) ^ src/parm.C:610:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"LENNARD_JONES_ACOEF")) ^ src/parm.C:629:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"LENNARD_JONES_BCOEF")) ^ src/parm.C:650:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"BONDS_INC_HYDROGEN")) ^ src/parm.C:682:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"BONDS_WITHOUT_HYDROGEN")) ^ src/parm.C:715:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"ANGLES_INC_HYDROGEN")) ^ src/parm.C:750:46: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"ANGLES_WITHOUT_HYDROGEN")) ^ src/parm.C:786:45: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"DIHEDRALS_INC_HYDROGEN")) ^ src/parm.C:823:49: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"DIHEDRALS_WITHOUT_HYDROGEN")) ^ src/parm.C:855:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"EXCLUDED_ATOMS_LIST")) ^ src/parm.C:876:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"HBOND_ACOEF")) ^ src/parm.C:894:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"HBOND_BCOEF")) ^ src/parm.C:912:27: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"HBCUT")) ^ src/parm.C:933:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"AMBER_ATOM_TYPE")) ^ src/parm.C:945:47: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"TREE_CHAIN_CLASSIFICATION")) ^ src/parm.C:957:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"JOIN_ARRAY")) ^ src/parm.C:980:29: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"IROTAT")) ^ src/parm.C:1009:40: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"SOLVENT_POINTERS")) ^ src/parm.C:1034:42: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] { if (!moveto(file,"ATOMS_PER_MOLECULE")) ^ src/parm.C:1050:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (!moveto(file,"BOX_DIMENSIONS")) ^ src/parm.C:199:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%d%d%d%d%d%d%d%d%d%d%d%d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Natom, &Ntypes, &Nbonh, &Mbona, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Ntheth, &Mtheta, &Nphih, &Mphia, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Nhparm, &Nparm, &Nnb, &Nres); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:205:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, "%d%d%d%d%d%d%d%d%d%d%d%d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Nbona, &Ntheta, &Nphia, &Numbnd, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Numang, &Nptra, &Natyp, &Nphb, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &ifpert, &idum, &idum, &idum); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:210:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ &idum, &idum,&idum,&IfBox,&Nmxrs,&IfCap); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:340:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Charges[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:358:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %e", &Masses[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:373:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &Iac[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:394:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &Iblo[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:415:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &Cno[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:448:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &Ipres[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:473:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Rk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/parm.C:491:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Req[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:509:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Tk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/parm.C:527:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Teq[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:545:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Pk[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/parm.C:563:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Pn[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ src/parm.C:581:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Phase[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:599:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Solty[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:618:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Cn1[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:637:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &Cn2[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:655:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~ &BondHAt1[i], &BondHAt2[i], &BondHNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:687:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~ &BondAt1[i], &BondAt2[i], &BondNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:720:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ &AngleHAt1[i], &AngleHAt2[i], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &AngleHAt3[i], &AngleHNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:755:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ &AngleAt1[i], &AngleAt2[i], ~~~~~~~~~~~~~~~~~~~~~~~~~~~ &AngleAt3[i], &AngleNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:791:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ &DihHAt1[i], &DihHAt2[i], &DihHAt3[i], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &DihHAt4[i], &DihHNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:828:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d %d %d", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ &DihAt1[i], &DihAt2[i], &DihAt3[i], ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &DihAt4[i], &DihNum[i]); ~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:860:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &ExclAt[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:884:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &HB12[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:902:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &HB6[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ src/parm.C:921:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f", &H[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~ src/parm.C:962:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &TreeJoin[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:985:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &AtomRes[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:1013:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %d %d", &Iptres, &Nspm, ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &Nspsol); ~~~~~~~~ src/parm.C:1039:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d", &Boundary[i]); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:1057:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %f %f %f", ~~~~~~^~~~~~~~~~~~~~~~~~~ #endif ~~~~~~ &Box[0], &Box[1], &Box[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~ src/parm.C:1080:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(file, " %d %f %f %f %f", ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ #endif ~~~~~~ &Natcap, &Cutcap, ~~~~~~~~~~~~~~~~~ &Xcap, &Ycap, &Zcap); ~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/imd.o -c src/imd.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/CompressPsf.o -c src/CompressPsf.C src/CompressPsf.C: In function ‘void outputCompressedFile(FILE*, FILE*)’: src/CompressPsf.C:642:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] fprintf(txtOfp, "%d", sig->fullExclOffset.size()); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ src/CompressPsf.C:648:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] fprintf(txtOfp, "%d", sig->modExclOffset.size()); ^~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/PluginIOMgr.o -c src/PluginIOMgr.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/DataExchanger.o -c src/DataExchanger.C x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/ParallelIOMgr.o -c src/ParallelIOMgr.C src/ParallelIOMgr.C: In member function ‘void ParallelIOMgr::readInfoForParOutput()’: src/ParallelIOMgr.C:418:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magicNum, sizeof(int), 1, ifp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/ParallelIOMgr.C:437:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(isWater, sizeof(char), numMyAtoms, ifp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/ParallelIOMgr.C:453:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(clusterID, sizeof(int), numMyAtoms, ifp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/dcdplugin.o -c -DVMDPLUGIN=molfile_dcdplugin plugins/molfile_plugin/src/dcdplugin.c x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/jsplugin.o -c -DVMDPLUGIN=molfile_jsplugin plugins/molfile_plugin/src/jsplugin.c x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/namdbinplugin.o -c -DVMDPLUGIN=molfile_namdbinplugin plugins/molfile_plugin/src/namdbinplugin.c plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’: plugins/molfile_plugin/src/namdbinplugin.c:65:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/pdbplugin.o -c -DVMDPLUGIN=molfile_pdbplugin plugins/molfile_plugin/src/pdbplugin.c x86_64-pc-linux-gnu-gcc -Iplugins/molfile_plugin/src -Iplugins/include -DSTATIC_PLUGIN -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/psfplugin.o -c -DVMDPLUGIN=molfile_psfplugin plugins/molfile_plugin/src/psfplugin.c rm -f obj/buildinfo.C; echo 'const char *namd_build_date = ' \"`date`\"\; > obj/buildinfo.C; echo 'const char *namd_build_user = ' \"\"\; >> obj/buildinfo.C; echo 'const char *namd_build_machine = ' \"`hostname`\"\; >> obj/buildinfo.C; cat obj/buildinfo.C; x86_64-pc-linux-gnu-g++ -I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -I/usr/include -DNAMD_TCL -I/usr/include -DNAMD_FFTW -DNAMD_FFTW_3 -DNAMD_VERSION=\"2.10\" -DNAMD_PLATFORM=\"Linux-x86_64\" -DREMOVE_PROXYRESULTMSG_EXTRACOPY -DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed -o obj/buildinfo.o -c obj/buildinfo.C const char *namd_build_date = "lun may 27 17:21:08 CEST 2019"; const char *namd_build_user = ""; const char *namd_build_machine = "post-doc.mis.rech.u-picardie.fr"; /usr/bin/charmc -Wl,-O1 -Wl,--as-needed -verbose -ld++-option \ '-I/usr/include/charm-6.8.2 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O2 -pipe -march=native -fno-stack-protector -Wl,-O1 -Wl,--as-needed ' \ "-module NeighborLB -module HybridLB -module RefineLB -module GreedyLB -module CkMulticast" -language charm++ \ obj/buildinfo.o \ obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o \ \ \ \ \ \ -ltcl8.6 -ltclstub8.6 -ldl -pthread \ -L/usr/lib64 -lfftw3f \ obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o \ \ \ -lm -o namd2 Verbose mode set Adding file obj/buildinfo.o... Adding file obj/ComputeMoa.o... Adding file obj/ComputeMsm.o... Adding file obj/ComputeMsmMsa.o... Adding file obj/ComputeMsmSerial.o... Adding file obj/ComputeFmmSerial.o... Adding file obj/msm.o... Adding file obj/msm_longrng.o... Adding file obj/msm_longrng_sprec.o... Adding file obj/msm_setup.o... Adding file obj/msm_shortrng.o... Adding file obj/msm_shortrng_sprec.o... Adding file obj/wkfutils.o... Adding file obj/common.o... Adding file obj/dcdlib.o... Adding file obj/erf.o... Adding file obj/fitrms.o... Adding file obj/main.o... Adding file obj/mainfunc.o... Adding file obj/memusage.o... Adding file obj/strlib.o... Adding file obj/AlgSeven.o... Adding file obj/AlgRecBisection.o... Adding file obj/AlgNbor.o... Adding file obj/AtomMap.o... Adding file obj/BackEnd.o... Adding file obj/BroadcastMgr.o... Adding file obj/BroadcastClient.o... Adding file obj/CollectionMaster.o... Adding file obj/CollectionMgr.o... Adding file obj/Communicate.o... Adding file obj/Compute.o... Adding file obj/ComputeAngles.o... Adding file obj/ComputeAniso.o... Adding file obj/ComputeBonds.o... Adding file obj/ComputeConsForce.o... Adding file obj/ComputeConsForceMsgs.o... Adding file obj/ComputeCrossterms.o... Adding file obj/ComputeCylindricalBC.o... Adding file obj/ComputeDihedrals.o... Adding file obj/ComputeDPME.o... Adding file obj/ComputeDPMEMsgs.o... Adding file obj/ComputeDPMTA.o... Adding file obj/ComputeEField.o... Adding file obj/ComputeEwald.o... Adding file obj/ComputeExt.o... Adding file obj/ComputeGBISser.o... Adding file obj/ComputeGBIS.o... Adding file obj/ComputeGromacsPair.o... Adding file obj/ComputeLCPO.o... Adding file obj/ComputeFullDirect.o... Adding file obj/ComputeHomePatch.o... Adding file obj/ComputeHomePatches.o... Adding file obj/ComputeImpropers.o... Adding file obj/ComputeGlobal.o... Adding file obj/ComputeGlobalMsgs.o... Adding file obj/ComputeGridForce.o... Adding file obj/ComputeMap.o... Adding file obj/ComputeMgr.o... Adding file obj/ComputeNonbondedSelf.o... Adding file obj/ComputeNonbondedPair.o... Adding file obj/ComputeNonbondedUtil.o... Adding file obj/ComputeNonbondedStd.o... Adding file obj/ComputeNonbondedFEP.o... Adding file obj/ComputeNonbondedGo.o... Adding file obj/ComputeNonbondedTI.o... Adding file obj/ComputeNonbondedLES.o... Adding file obj/ComputeNonbondedPProf.o... Adding file obj/ComputeNonbondedTabEnergies.o... Adding file obj/ComputeNonbondedCUDA.o... Adding file obj/ComputeNonbondedCUDAExcl.o... Adding file obj/ComputeNonbondedMIC.o... Adding file obj/ComputeNonbondedMICKernel.o... Adding file obj/ComputePatch.o... Adding file obj/ComputePatchPair.o... Adding file obj/ComputePme.o... Adding file obj/OptPme.o... Adding file obj/OptPmeRealSpace.o... Adding file obj/ComputeRestraints.o... Adding file obj/ComputeSphericalBC.o... Adding file obj/ComputeStir.o... Adding file obj/ComputeTclBC.o... Adding file obj/ComputeThole.o... Adding file obj/ConfigList.o... Adding file obj/Controller.o... Adding file obj/ccsinterface.o... Adding file obj/DataStream.o... Adding file obj/DumpBench.o... Adding file obj/FreeEnergyAssert.o... Adding file obj/FreeEnergyGroup.o... Adding file obj/FreeEnergyLambda.o... Adding file obj/FreeEnergyLambdMgr.o... Adding file obj/FreeEnergyParse.o... Adding file obj/FreeEnergyRestrain.o... Adding file obj/FreeEnergyRMgr.o... Adding file obj/FreeEnergyVector.o... Adding file obj/fstream_namd.o... Adding file obj/GlobalMaster.o... Adding file obj/GlobalMasterServer.o... Adding file obj/GlobalMasterTest.o... Adding file obj/GlobalMasterIMD.o... Adding file obj/GlobalMasterTcl.o... Adding file obj/GlobalMasterSMD.o... Adding file obj/GlobalMasterTMD.o... Adding file obj/Matrix4Symmetry.o... Adding file obj/GlobalMasterSymmetry.o... Adding file obj/GlobalMasterFreeEnergy.o... Adding file obj/GlobalMasterEasy.o... Adding file obj/GlobalMasterMisc.o... Adding file obj/colvar.o... Adding file obj/colvaratoms.o... Adding file obj/colvarbias.o... Adding file obj/colvarbias_abf.o... Adding file obj/colvarbias_alb.o... Adding file obj/colvarbias_meta.o... Adding file obj/colvarbias_restraint.o... Adding file obj/colvarcomp.o... Adding file obj/colvarcomp_angles.o... Adding file obj/colvarcomp_coordnums.o... Adding file obj/colvarcomp_distances.o... Adding file obj/colvarcomp_protein.o... Adding file obj/colvarcomp_rotations.o... Adding file obj/colvargrid.o... Adding file obj/colvarmodule.o... Adding file obj/colvarparse.o... Adding file obj/colvarproxy_namd.o... Adding file obj/colvarscript.o... Adding file obj/colvartypes.o... Adding file obj/colvarvalue.o... Adding file obj/GridForceGrid.o... Adding file obj/GromacsTopFile.o... Adding file obj/heap.o... Adding file obj/HomePatch.o... Adding file obj/IMDOutput.o... Adding file obj/InfoStream.o... Adding file obj/LdbCoordinator.o... Adding file obj/LJTable.o... Adding file obj/Measure.o... Adding file obj/MGridforceParams.o... Adding file obj/MStream.o... Adding file obj/MigrateAtomsMsg.o... Adding file obj/Molecule.o... Adding file obj/Molecule2.o... Adding file obj/GoMolecule.o... Adding file obj/NamdCentLB.o... Adding file obj/NamdNborLB.o... Adding file obj/NamdHybridLB.o... Adding file obj/NamdDummyLB.o... Adding file obj/NamdState.o... Adding file obj/NamdOneTools.o... Adding file obj/Node.o... Adding file obj/Output.o... Adding file obj/Parameters.o... Adding file obj/ParseOptions.o... Adding file obj/Patch.o... Adding file obj/PatchMgr.o... Adding file obj/PatchMap.o... Adding file obj/PDB.o... Adding file obj/PDBData.o... Adding file obj/PmeKSpace.o... Adding file obj/PmeRealSpace.o... Adding file obj/ProcessorPrivate.o... Adding file obj/ProxyMgr.o... Adding file obj/ProxyPatch.o... Adding file obj/Rebalancer.o... Adding file obj/RecBisection.o... Adding file obj/ReductionMgr.o... Adding file obj/RefineOnly.o... Adding file obj/RefineTorusLB.o... Adding file obj/ScriptTcl.o... Adding file obj/Sequencer.o... Adding file obj/Set.o... Adding file obj/Settle.o... Adding file obj/SimParameters.o... Adding file obj/SortAtoms.o... Adding file obj/Sync.o... Adding file obj/TclCommands.o... Adding file obj/TorusLB.o... Adding file obj/WorkDistrib.o... Adding file obj/pub3dfft.o... Adding file obj/vmdsock.o... Adding file obj/parm.o... Adding file obj/imd.o... Adding file obj/CompressPsf.o... Adding file obj/PluginIOMgr.o... Adding file obj/DataExchanger.o... Adding file obj/ParallelIOMgr.o... Adding file obj/dcdplugin.o... Adding file obj/jsplugin.o... Adding file obj/namdbinplugin.o... Adding file obj/pdbplugin.o... Adding file obj/psfplugin.o... x86_64-pc-linux-gnu-gfortran: error: unrecognized command line option ‘-pipe.a’; did you mean ‘-pipe’? OpenMP support not enabled charmc> ----------- Module dependency search ------------ charmc> ----------- Module dependency search complete ------------ Adding registration for module NeighborLB Adding registration for module HybridLB Adding registration for module RefineLB Adding registration for module GreedyLB Adding registration for module CkMulticast charmc: Executing g++ -DCMK_GFORTRAN -D_REENTRANT -D__CHARMC__=1 -DCMK_OPTIMIZE=1 -Iinc -Isrc -O2 -pipe -march=native -fno-stack-protector -pthread -fno-stack-protector -fno-lifetime-dse -fPIC -c moduleinit1819.C -o moduleinit1819.o charmc> All libraries are: -L/usr/lib64 -I/usr/include/charm-6.8.2 obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit1819.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -ltmgr -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lpthread -lckqt -ldl -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--as-needed -ltcl8.6 -ltclstub8.6 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleNDMeshStreamer -lmodulecompletion -lnuma -lm charmc: Executing g++ -rdynamic -D_REENTRANT -O2 -pipe -march=native -fno-stack-protector -pthread -L/usr/lib64 -fPIC -I/usr/include/charm-6.8.2 -o namd2 -L/usr/lib64 -I/usr/include/charm-6.8.2 obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit1819.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -ltmgr -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lpthread -lckqt -ldl -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--as-needed -ltcl8.6 -ltclstub8.6 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleNDMeshStreamer -lmodulecompletion -lnuma -lm /usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libmoduleHybridLB.so: undefined reference to `AllocateGreedyRefineLB()' collect2: error: ld returned 1 exit status Fatal Error by charmc in directory /var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source/Linux-x86_64-g++ Command g++ -rdynamic -D_REENTRANT -O2 -pipe -march=native -fno-stack-protector -pthread -L/usr/lib64 -fPIC -I/usr/include/charm-6.8.2 -o namd2 -L/usr/lib64 -I/usr/include/charm-6.8.2 obj/buildinfo.o obj/ComputeMoa.o obj/ComputeMsm.o obj/ComputeMsmMsa.o obj/ComputeMsmSerial.o obj/ComputeFmmSerial.o obj/msm.o obj/msm_longrng.o obj/msm_longrng_sprec.o obj/msm_setup.o obj/msm_shortrng.o obj/msm_shortrng_sprec.o obj/wkfutils.o obj/common.o obj/dcdlib.o obj/erf.o obj/fitrms.o obj/main.o obj/mainfunc.o obj/memusage.o obj/strlib.o obj/AlgSeven.o obj/AlgRecBisection.o obj/AlgNbor.o obj/AtomMap.o obj/BackEnd.o obj/BroadcastMgr.o obj/BroadcastClient.o obj/CollectionMaster.o obj/CollectionMgr.o obj/Communicate.o obj/Compute.o obj/ComputeAngles.o obj/ComputeAniso.o obj/ComputeBonds.o obj/ComputeConsForce.o obj/ComputeConsForceMsgs.o obj/ComputeCrossterms.o obj/ComputeCylindricalBC.o obj/ComputeDihedrals.o obj/ComputeDPME.o obj/ComputeDPMEMsgs.o obj/ComputeDPMTA.o obj/ComputeEField.o obj/ComputeEwald.o obj/ComputeExt.o obj/ComputeGBISser.o obj/ComputeGBIS.o obj/ComputeGromacsPair.o obj/ComputeLCPO.o obj/ComputeFullDirect.o obj/ComputeHomePatch.o obj/ComputeHomePatches.o obj/ComputeImpropers.o obj/ComputeGlobal.o obj/ComputeGlobalMsgs.o obj/ComputeGridForce.o obj/ComputeMap.o obj/ComputeMgr.o obj/ComputeNonbondedSelf.o obj/ComputeNonbondedPair.o obj/ComputeNonbondedUtil.o obj/ComputeNonbondedStd.o obj/ComputeNonbondedFEP.o obj/ComputeNonbondedGo.o obj/ComputeNonbondedTI.o obj/ComputeNonbondedLES.o obj/ComputeNonbondedPProf.o obj/ComputeNonbondedTabEnergies.o obj/ComputeNonbondedCUDA.o obj/ComputeNonbondedCUDAExcl.o obj/ComputeNonbondedMIC.o obj/ComputeNonbondedMICKernel.o obj/ComputePatch.o obj/ComputePatchPair.o obj/ComputePme.o obj/OptPme.o obj/OptPmeRealSpace.o obj/ComputeRestraints.o obj/ComputeSphericalBC.o obj/ComputeStir.o obj/ComputeTclBC.o obj/ComputeThole.o obj/ConfigList.o obj/Controller.o obj/ccsinterface.o obj/DataStream.o obj/DumpBench.o obj/FreeEnergyAssert.o obj/FreeEnergyGroup.o obj/FreeEnergyLambda.o obj/FreeEnergyLambdMgr.o obj/FreeEnergyParse.o obj/FreeEnergyRestrain.o obj/FreeEnergyRMgr.o obj/FreeEnergyVector.o obj/fstream_namd.o obj/GlobalMaster.o obj/GlobalMasterServer.o obj/GlobalMasterTest.o obj/GlobalMasterIMD.o obj/GlobalMasterTcl.o obj/GlobalMasterSMD.o obj/GlobalMasterTMD.o obj/Matrix4Symmetry.o obj/GlobalMasterSymmetry.o obj/GlobalMasterFreeEnergy.o obj/GlobalMasterEasy.o obj/GlobalMasterMisc.o obj/colvar.o obj/colvaratoms.o obj/colvarbias.o obj/colvarbias_abf.o obj/colvarbias_alb.o obj/colvarbias_meta.o obj/colvarbias_restraint.o obj/colvarcomp.o obj/colvarcomp_angles.o obj/colvarcomp_coordnums.o obj/colvarcomp_distances.o obj/colvarcomp_protein.o obj/colvarcomp_rotations.o obj/colvargrid.o obj/colvarmodule.o obj/colvarparse.o obj/colvarproxy_namd.o obj/colvarscript.o obj/colvartypes.o obj/colvarvalue.o obj/GridForceGrid.o obj/GromacsTopFile.o obj/heap.o obj/HomePatch.o obj/IMDOutput.o obj/InfoStream.o obj/LdbCoordinator.o obj/LJTable.o obj/Measure.o obj/MGridforceParams.o obj/MStream.o obj/MigrateAtomsMsg.o obj/Molecule.o obj/Molecule2.o obj/GoMolecule.o obj/NamdCentLB.o obj/NamdNborLB.o obj/NamdHybridLB.o obj/NamdDummyLB.o obj/NamdState.o obj/NamdOneTools.o obj/Node.o obj/Output.o obj/Parameters.o obj/ParseOptions.o obj/Patch.o obj/PatchMgr.o obj/PatchMap.o obj/PDB.o obj/PDBData.o obj/PmeKSpace.o obj/PmeRealSpace.o obj/ProcessorPrivate.o obj/ProxyMgr.o obj/ProxyPatch.o obj/Rebalancer.o obj/RecBisection.o obj/ReductionMgr.o obj/RefineOnly.o obj/RefineTorusLB.o obj/ScriptTcl.o obj/Sequencer.o obj/Set.o obj/Settle.o obj/SimParameters.o obj/SortAtoms.o obj/Sync.o obj/TclCommands.o obj/TorusLB.o obj/WorkDistrib.o obj/pub3dfft.o obj/vmdsock.o obj/parm.o obj/imd.o obj/CompressPsf.o obj/PluginIOMgr.o obj/DataExchanger.o obj/ParallelIOMgr.o obj/dcdplugin.o obj/jsplugin.o obj/namdbinplugin.o obj/pdbplugin.o obj/psfplugin.o moduleinit1819.o -lmoduleCkMulticast -lmoduleGreedyLB -lmoduleRefineLB -lmoduleHybridLB -lmoduleNeighborLB -lckmain -lck -lmemory-default -lthreads-default -lconv-cplus-y -lconv-core -ltmgr -lconv-util -lconv-partition -lmemory-default -lthreads-default -lldb-rand -lconv-ldb -lpthread -lckqt -ldl -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--as-needed -ltcl8.6 -ltclstub8.6 -ldl -lfftw3f -lm -lmoduleNeighborLB -lmoduleHybridLB -lmoduleRefineLB -lmoduleGreedyLB -lmoduleCkMulticast -lmoduleNDMeshStreamer -lmodulecompletion -lnuma -lm returned error code 1 charmc exiting... rm -f moduleinit1819.C moduleinit1819.o make: *** [Makefile:437: namd2] Error 1 * ERROR: sci-chemistry/namd-2.10::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/namd-2.10::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/namd-2.10::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:namd-2.10:20190527-152101.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/namd-2.10/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/namd-2.10/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source/Linux-x86_64-g++' * S: '/var/tmp/portage/sci-chemistry/namd-2.10/work/NAMD_2.10_Source'