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Gentoo's Bugzilla – Attachment 572208 Details for
Bug 682850
sci-chemistry/vmd fixing instructions for vmd fetching
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fixed ebuild
file_682850.txt (text/plain), 7.18 KB, created by
Lukas Schreder
on 2019-04-07 22:22:14 UTC
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Description:
fixed ebuild
Filename:
MIME Type:
Creator:
Lukas Schreder
Created:
2019-04-07 22:22:14 UTC
Size:
7.18 KB
patch
obsolete
># Copyright 1999-2019 Gentoo Authors ># Distributed under the terms of the GNU General Public License v2 > >EAPI=5 > >PYTHON_COMPAT=( python2_7 ) > >inherit cuda eutils flag-o-matic multilib prefix python-single-r1 toolchain-funcs > >DESCRIPTION="Visual Molecular Dynamics" >HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/" >SRC_URI=" > https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz > ${P}.src.tar" > >SLOT="0" >LICENSE="vmd" >KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" >IUSE="cuda gromacs msms povray sqlite tachyon xinerama" >REQUIRED_USE="${PYTHON_REQUIRED_USE}" > >RESTRICT="fetch" > ># currently, tk-8.5* with USE=truetype breaks some ># tk apps such as Sequence Viewer or Timeline. >CDEPEND=" > >=dev-lang/tk-8.6.1 > dev-lang/perl > dev-libs/expat > dev-python/numpy[${PYTHON_USEDEP}] > sci-libs/netcdf:0= > virtual/opengl > >=x11-libs/fltk-1.1.10-r2:1 > x11-libs/libXft > x11-libs/libXi > ${PYTHON_DEPS} > cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1:= ) > gromacs? ( >=sci-chemistry/gromacs-5.0.4-r1:0=[tng] ) > sqlite? ( dev-db/sqlite:3= ) > tachyon? ( >=media-gfx/tachyon-0.99_beta6 ) > xinerama? ( x11-libs/libXinerama )" >DEPEND="${CDEPEND} > virtual/pkgconfig > dev-lang/swig" >RDEPEND="${CDEPEND} > sci-biology/stride > sci-chemistry/surf > x11-terms/xterm > msms? ( sci-chemistry/msms-bin ) > povray? ( media-gfx/povray ) > " > >VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD" ># Binary only plugin!! >QA_PREBUILT="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" >QA_FLAGS_IGNORED_amd64=" usr/lib64/vmd/plugins/LINUX/tcl/volutil1.3/volutil" >QA_FLAGS_IGNORED_x86=" usr/lib/vmd/plugins/LINUX/tcl/volutil1.3/volutil" > >pkg_nofetch() { > elog "Please download ${P}.src.tar from" > elog "${VMD_DOWNLOAD}" > elog "after agreeing to the license and get" > elog "https://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches.tar.xz" > elog "Place both into your DISTDIR directory" >} > >src_prepare() { > use cuda && cuda_sanitize > > epatch "${FILESDIR}"/${PN}-1.9.1-cuda-device_ptr.patch > > cd "${WORKDIR}"/plugins || die > > epatch \ > "${WORKDIR}"/${P}-gentoo-plugins.patch > > [[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile) > > sed \ > -e "s:CC = gcc:CC = $(tc-getCC):" \ > -e "s:CXX = g++:CXX = $(tc-getCXX):" \ > -e "s:COPTO =.*\":COPTO = -fPIC -o \":" \ > -e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o \":" \ > -e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \ > -e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \ > -e "s:SHLD = gcc:SHLD = $(tc-getCC) -shared:" \ > -e "s:SHXXLD = g++:SHXXLD = $(tc-getCXX) -shared:" \ > -e "s:-ltcl8.5:-ltcl:" \ > -i Make-arch || die "Failed to set up plugins Makefile" > > sed \ > -e '/^AR /s:=:?=:g' \ > -e '/^RANLIB /s:=:?=:g' \ > -i ../plugins/*/Makefile || die > > tc-export AR RANLIB > > sed \ > -e "s:\$(CXXFLAGS)::g" \ > -i hesstrans/Makefile || die > > # prepare vmd itself > cd "${S}" || die > > epatch "${WORKDIR}"/${P}-gentoo-base.patch > > # PREFIX > sed \ > -e "s:/usr/include/:${EPREFIX}/usr/include:g" \ > -i configure || die > > sed \ > -e "s:gentoo-bindir:${ED}/usr/bin:g" \ > -e "s:gentoo-libdir:${ED}/usr/$(get_libdir):g" \ > -e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:g" \ > -e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):g" \ > -e "s:gentoo-gcc:$(tc-getCC):g" \ > -e "s:gentoo-g++:$(tc-getCXX):g" \ > -e "s:gentoo-nvcc:${EPREFIX}/opt/cuda/bin/nvcc:g" \ > -e "s:gentoo-cflags:${CFLAGS}:g" \ > -e "s:gentoo-cxxflags:${CXXFLAGS}:g" \ > -e "s:gentoo-nvflags::g" \ > -e "s:gentoo-ldflags:${LDFLAGS}:g" \ > -e "s:gentoo-plugindir:${WORKDIR}/plugins:g" \ > -e "s:gentoo-fltk-include:$(fltk-config --includedir):g" \ > -e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):g" \ > -e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:g" \ > -e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):g" \ > -i configure || die > > if use cuda; then > sed \ > -e "s:gentoo-cuda-lib:${EPREFIX}/opt/cuda/$(get_libdir):g" \ > -e "/NVCCFLAGS/s:=:= ${NVCCFLAGS}:g" \ > -i configure src/Makefile || die > sed \ > -e '/compute_/d' \ > -i configure || die > sed \ > -e 's:-gencode .*code=sm_..::' \ > -i src/Makefile || die > fi > > sed \ > -e "s:LINUXPPC:LINUX:g" \ > -e "s:LINUXALPHA:LINUX:g" \ > -e "s:LINUXAMD64:LINUX:g" \ > -e "s:gentoo-stride:${EPREFIX}/usr/bin/stride:g" \ > -e "s:gentoo-surf:${EPREFIX}/usr/bin/surf:g" \ > -e "s:gentoo-tachyon:${EPREFIX}/usr/bin/tachyon:g" \ > -i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script" > > EMAKEOPTS=( > TCLINC="-I${EPREFIX}/usr/include" > TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" > TCLLDFLAGS="-shared" > NETCDFLIB="$($(tc-getPKG_CONFIG) --libs-only-L netcdf) ${EPREFIX}/usr/$(get_libdir)/libnetcdf.so" > NETCDFINC="$($(tc-getPKG_CONFIG) --cflags-only-I netcdf) ${EPREFIX}/usr/include" > NETCDFLDFLAGS="$($(tc-getPKG_CONFIG) --libs netcdf)" > NETCDFDYNAMIC=1 > EXPATINC="-I${EPREFIX}/usr/include" > EXPATLIB="$($(tc-getPKG_CONFIG) --libs expat)" > EXPATLDFLAGS="-shared" > EXPATDYNAMIC=1 > ) > if use gromacs; then > EMAKEOPTS+=( > TNGLIB="$($(tc-getPKG_CONFIG) --libs libgromacs)" > TNGINC="-I${EPREFIX}/usr/include" > TNGLDFLAGS="-shared" > TNGDYNAMIC=1 > ) > fi > if use sqlite; then > EMAKEOPTS+=( > SQLITELIB="$($(tc-getPKG_CONFIG) --libs sqlite3)" > SQLITEINC="-I${EPREFIX}/usr/include" > SQLITELDFLAGS="-shared" > SQLITEDYNAMIC=1 > ) > fi >} > >src_configure() { > local myconf="OPENGL OPENGLPBUFFER COLVARS FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT XINPUT" > rm -f configure.options && echo $myconf >> configure.options > > use cuda && myconf+=" CUDA" ># use mpi && myconf+=" MPI" > use tachyon && myconf+=" LIBTACHYON" && append-cflags -I"${EPREFIX}/usr/include/tachyon" > use xinerama && myconf+=" XINERAMA" > > export \ > PYTHON_INCLUDE_DIR="$(python_get_includedir)" \ > PYTHON_LIBRARY_DIR="$(python_get_library_path)" \ > PYTHON_LIBRARY="$(python_get_LIBS)" \ > NUMPY_INCLUDE_DIR="$(python_get_sitedir)/numpy/core/include" \ > NUMPY_LIBRARY_DIR="$(python_get_sitedir)/numpy/core/include" > > perl ./configure LINUX \ > ${myconf} || die >} > >src_compile() { > # build plugins > cd "${WORKDIR}"/plugins || die > > emake \ > ${EMAKEOPTS[@]} \ > LINUX > > # build vmd > cd "${S}"/src || die > emake >} > >src_install() { > # install plugins > cd "${WORKDIR}"/plugins || die > emake \ > PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \ > distrib > > # install vmd > cd "${S}"/src || die > emake install > > # install docs > cd "${S}" || die > dodoc Announcement README doc/ig.pdf doc/ug.pdf > > # remove some of the things we don't want and need in > # /usr/lib > cd "${ED}"/usr/$(get_libdir)/vmd || die > rm -fr doc README Announcement LICENSE || \ > die "failed to clean up /usr/lib/vmd directory" > > # adjust path in vmd wrapper > sed \ > -e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \ > -e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \ > || die "failed to set up vmd wrapper script" > > # install icon and generate desktop entry > insinto /usr/share/pixmaps > doins "${WORKDIR}"/vmd.png > eprefixify "${WORKDIR}"/vmd.desktop > sed -i '/^Path/d' "${WORKDIR}"/vmd.desktop || die > domenu "${WORKDIR}"/vmd.desktop >}
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bug 682850
: 572208