build.log

build.log (text/x-log), 173.86 KB, created by Juergen Rose on 2018-11-28 13:16:34 UTC

[32;01m * [39;49;00mPackage:    sci-chemistry/pymol-2.2.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking pymol-1.8.4.0.png.xz to /var/tmp/portage/sci-chemistry/pymol-2.2.0/work
>>> Unpacking pymol-2.2.0.tar.gz to /var/tmp/portage/sci-chemistry/pymol-2.2.0/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/pymol-2.2.0/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0 ...
 [32;01m*[0m python2_7: running distutils-r1_run_phase distutils-r1_python_compile
python2.7 setup.py build
fatal: not a git repository (or any parent up to mount point /var)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
svn: E155007: '/var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0' is not a working copy
argparse not available
running build
running build_py
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed/epymol
copying modules/pymol/embed/epymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed/epymol
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
copying modules/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
copying modules/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
copying modules/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
copying modules/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
copying modules/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/tinker
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/keymapping.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
copying modules/pmg_qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/startup
copying modules/pmg_tk/startup/apbs_tools.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/startup
copying modules/pmg_tk/startup/remote_pdb_load.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/startup
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/glu
copying modules/pymol/opengl/glu/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/glu
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/mmtf
copying modules/chempy/mmtf/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/mmtf
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/syntax
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/fast
copying modules/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/fast
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/fragments
copying modules/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/fragments
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_tk/TextEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/volume.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
copying modules/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/Qt
copying modules/pymol/Qt/utils.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/Qt
copying modules/pymol/Qt/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/Qt
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/demo
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/contrib
copying modules/pymol/contrib/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/contrib
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/glut
copying modules/pymol/opengl/glut/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/glut
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol2
copying modules/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol2
copying modules/pymol2/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol2
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/stereochemistry
copying modules/pymol/embed/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_tk/skins/normal
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/champ
copying modules/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/champ
copying modules/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/champ
copying modules/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/champ
copying modules/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/champ
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed/wxpymol
copying modules/pymol/embed/wxpymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/embed/wxpymol
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
copying modules/pymol/plugins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/gl
copying modules/pymol/opengl/gl/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl/gl
copying modules/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/diagnosing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/_gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/lazyio.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/__main__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/m4x.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/colorprinting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
copying modules/pymol/morphing.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy/bmin
copying modules/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/cex.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
copying modules/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/chempy
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/fedora.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/annotation.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/appearance.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/box.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/command.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/distance.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/density.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/label.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/charge.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/filter.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/dragging.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/demo.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/wizard
copying modules/pymol/opengl/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pymol/opengl
copying modules/pmg_qt/forms/props.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/lib/pmg_qt/forms
warning: build_py_pymol: byte-compiling is disabled, skipping.

running build_ext
building 'pymol._cmd' extension
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/build
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/build/generated
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/mmtf-c
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer0
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer1
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer2
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer3
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer4
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer5
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/modules
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/modules/cealign
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/modules/cealign/src
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/ov
creating /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/ov/src
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/mmtf-c/mmtf_parser.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/mmtf-c/mmtf_parser.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(magicchar,sizeof(char),4,fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&igarb,sizeof(int),1,fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&dataBegin, sizeof(int), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(line, 80, infile);
    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
      fgets(line, 80, infile);
      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(line, 80, infile);
               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
      fgets(line, 80, infile); //one more read to keep us in sync
      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
                      fgets(line, 80, infile);
                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
          fgets(line, 80, infile);
          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
                  fgets(line, 80, infile);
                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
          fgets(line, 80, infile);
          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1023, cube->fd);    // go on to next line
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1023, cube->fd); // skip second header line
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(readbuf, 1023, cube->fd);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(readbuf, 1023, cube->fd);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(cube->fd, "%d", &cube->nsets);
     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
       fscanf(cube->fd, "%d", &orb);
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1037:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(buffer, fileLen, 1, file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(readbuf, 1024, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(title, 82, fd);
   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, 82, fd);
   ^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&filen, sizeof(namdbin_int32), 1, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fread(brick, sizeof(char), 512, fd);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, "%3s", keyWord);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &prod);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &plus);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &sigma);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, fd);
       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(symData, 81, fd);
       ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(buf, 85, file);
         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " %d", &cur);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(sdum, 512, file);
   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "%FLAG"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(prm->title, sizeof(prm->title), file);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(sdum, sizeof(sdum), file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file,parm7,
   ~~~~~~^~~~~~~~~~~~
          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Jparm,  &prm->Nparm);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, parm7,
   ~~~~~~^~~~~~~~~~~~~
          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Natyp, &prm->Nphb);
          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file,"%8d",&prm->Numextra); //BB
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(datablock, total * sizeof(float), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(line, 80, infile);
         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(fbuffer, 1024, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(fbuffer, 1024, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Charges[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(file, " " DBLFMT, &prm->Masses[i]);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Rk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Req[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Tk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Teq[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Pk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Pn[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Phase[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Solty[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->HB12[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->HB6[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &H[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Box[0], &prm->Box[1], &prm->Box[2]);
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Natcap, &prm->Cutcap,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Xcap, &prm->Ycap, &prm->Zcap);
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(skip, 1, 8, fp);
   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&headersize, sizeof(int), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(intHeader, sizeof(int), 5, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(floatHeader, sizeof(float), 6, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fread(brick, sizeof(char), 512, fd);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(fileHeader, sizeof(short), 19, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(lineptr, LINESIZE, data->file);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (&len, sizeof(int), 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (str, len, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 1, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 1, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 2, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 2, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 8, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  fgets(lineptr, LINESIZE, data->file);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(lineptr, LINESIZE, data->file);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, bgf->file);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(nextline, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(line, LINESIZE, bgf->file);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12066:105: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTFVSGIXPROC)(GLenum, GLenum, const GLfloat*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTFVSGIXPROC) (GLenum light, GLenum pname, const GLfloat *params);
                                                                                                         ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18734:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTFVSGIXPROC)(GLenum, GLenum, GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTFVSGIXPROC) (GLenum light, GLenum pname, GLfloat* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12068:103: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTIVSGIXPROC)(GLenum, GLenum, const GLint*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTIVSGIXPROC) (GLenum light, GLenum pname, const GLint *params);
                                                                                                       ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18736:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTIVSGIXPROC)(GLenum, GLenum, GLint*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTIVSGIXPROC) (GLenum light, GLenum pname, GLint* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12070:96: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTMODELFVSGIXPROC)(GLenum, const GLfloat*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTMODELFVSGIXPROC) (GLenum pname, const GLfloat *params);
                                                                                                ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18730:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTMODELFVSGIXPROC)(GLenum, GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTMODELFVSGIXPROC) (GLenum pname, GLfloat* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12072:94: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTMODELIVSGIXPROC)(GLenum, const GLint*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTMODELIVSGIXPROC) (GLenum pname, const GLint *params);
                                                                                              ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18732:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTMODELIVSGIXPROC)(GLenum, GLint*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTMODELIVSGIXPROC) (GLenum pname, GLint* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12079:104: error: conflicting declaration ‘typedef void (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, GLfloat*)’
 typedef void (APIENTRYP PFNGLGETFRAGMENTMATERIALFVSGIXPROC) (GLenum face, GLenum pname, GLfloat *params);
                                                                                                        ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18743:28: note: previous declaration as ‘typedef void (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, const GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLGETFRAGMENTMATERIALFVSGIXPROC) (GLenum face, GLenum pname, const GLfloat* data);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12080:102: error: conflicting declaration ‘typedef void (* PFNGLGETFRAGMENTMATERIALIVSGIXPROC)(GLenum, GLenum, GLint*)’
 typedef void (APIENTRYP PFNGLGETFRAGMENTMATERIALIVSGIXPROC) (GLenum face, GLenum pname, GLint *params);
                                                                                                      ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:18744:28: note: previous declaration as ‘typedef void (* PFNGLGETFRAGMENTMATERIALIVSGIXPROC)(GLenum, GLenum, const GLint*)’
 typedef void (GLAPIENTRY * PFNGLGETFRAGMENTMATERIALIVSGIXPROC) (GLenum face, GLenum pname, const GLint* data);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12083:74: error: ‘void __glewFragmentColorMaterialSGIX(GLenum, GLenum)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentColorMaterialSGIX (GLenum face, GLenum mode);
                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22672:52: note: previous declaration ‘void (* __glewFragmentColorMaterialSGIX)(GLenum, GLenum)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTCOLORMATERIALSGIXPROC __glewFragmentColorMaterialSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12084:84: error: ‘void __glewFragmentLightfSGIX(GLenum, GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightfSGIX (GLenum light, GLenum pname, GLfloat param);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22677:45: note: previous declaration ‘void (* __glewFragmentLightfSGIX)(GLenum, GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTFSGIXPROC __glewFragmentLightfSGIX;
                                             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12085:93: error: ‘void __glewFragmentLightfvSGIX(GLenum, GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightfvSGIX (GLenum light, GLenum pname, const GLfloat *params);
                                                                                             ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22678:46: note: previous declaration ‘void (* __glewFragmentLightfvSGIX)(GLenum, GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTFVSGIXPROC __glewFragmentLightfvSGIX;
                                              ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12086:82: error: ‘void __glewFragmentLightiSGIX(GLenum, GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightiSGIX (GLenum light, GLenum pname, GLint param);
                                                                                  ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22679:45: note: previous declaration ‘void (* __glewFragmentLightiSGIX)(GLenum, GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTISGIXPROC __glewFragmentLightiSGIX;
                                             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12087:91: error: ‘void __glewFragmentLightivSGIX(GLenum, GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightivSGIX (GLenum light, GLenum pname, const GLint *params);
                                                                                           ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22680:46: note: previous declaration ‘void (* __glewFragmentLightivSGIX)(GLenum, GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTIVSGIXPROC __glewFragmentLightivSGIX;
                                              ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12088:75: error: ‘void __glewFragmentLightModelfSGIX(GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelfSGIX (GLenum pname, GLfloat param);
                                                                           ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22673:50: note: previous declaration ‘void (* __glewFragmentLightModelfSGIX)(GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELFSGIXPROC __glewFragmentLightModelfSGIX;
                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12089:84: error: ‘void __glewFragmentLightModelfvSGIX(GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelfvSGIX (GLenum pname, const GLfloat *params);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22674:51: note: previous declaration ‘void (* __glewFragmentLightModelfvSGIX)(GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELFVSGIXPROC __glewFragmentLightModelfvSGIX;
                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12090:73: error: ‘void __glewFragmentLightModeliSGIX(GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModeliSGIX (GLenum pname, GLint param);
                                                                         ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22675:50: note: previous declaration ‘void (* __glewFragmentLightModeliSGIX)(GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELISGIXPROC __glewFragmentLightModeliSGIX;
                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12091:82: error: ‘void __glewFragmentLightModelivSGIX(GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelivSGIX (GLenum pname, const GLint *params);
                                                                                  ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22676:51: note: previous declaration ‘void (* __glewFragmentLightModelivSGIX)(GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELIVSGIXPROC __glewFragmentLightModelivSGIX;
                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12092:86: error: ‘void __glewFragmentMaterialfSGIX(GLenum, GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialfSGIX (GLenum face, GLenum pname, GLfloat param);
                                                                                      ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22681:48: note: previous declaration ‘void (* __glewFragmentMaterialfSGIX)(GLenum, GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALFSGIXPROC __glewFragmentMaterialfSGIX;
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12093:95: error: ‘void __glewFragmentMaterialfvSGIX(GLenum, GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialfvSGIX (GLenum face, GLenum pname, const GLfloat *params);
                                                                                               ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22682:49: note: previous declaration ‘void (* __glewFragmentMaterialfvSGIX)(GLenum, GLenum, const GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALFVSGIXPROC __glewFragmentMaterialfvSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12094:84: error: ‘void __glewFragmentMaterialiSGIX(GLenum, GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialiSGIX (GLenum face, GLenum pname, GLint param);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22683:48: note: previous declaration ‘void (* __glewFragmentMaterialiSGIX)(GLenum, GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALISGIXPROC __glewFragmentMaterialiSGIX;
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12095:93: error: ‘void __glewFragmentMaterialivSGIX(GLenum, GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialivSGIX (GLenum face, GLenum pname, const GLint *params);
                                                                                             ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22684:49: note: previous declaration ‘void (* __glewFragmentMaterialivSGIX)(GLenum, GLenum, const GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALIVSGIXPROC __glewFragmentMaterialivSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12096:90: error: ‘void __glewGetFragmentLightfvSGIX(GLenum, GLenum, GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentLightfvSGIX (GLenum light, GLenum pname, GLfloat *params);
                                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22685:49: note: previous declaration ‘void (* __glewGetFragmentLightfvSGIX)(GLenum, GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTLIGHTFVSGIXPROC __glewGetFragmentLightfvSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12097:88: error: ‘void __glewGetFragmentLightivSGIX(GLenum, GLenum, GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentLightivSGIX (GLenum light, GLenum pname, GLint *params);
                                                                                        ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22686:49: note: previous declaration ‘void (* __glewGetFragmentLightivSGIX)(GLenum, GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTLIGHTIVSGIXPROC __glewGetFragmentLightivSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12098:92: error: ‘void __glewGetFragmentMaterialfvSGIX(GLenum, GLenum, GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentMaterialfvSGIX (GLenum face, GLenum pname, GLfloat *params);
                                                                                            ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22687:52: note: previous declaration ‘void (* __glewGetFragmentMaterialfvSGIX)(GLenum, GLenum, const GLfloat*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTMATERIALFVSGIXPROC __glewGetFragmentMaterialfvSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glext.h:12099:90: error: ‘void __glewGetFragmentMaterialivSGIX(GLenum, GLenum, GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentMaterialivSGIX (GLenum face, GLenum pname, GLint *params);
                                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer1/Ortho.h:28,
                 from layer0/Err.cpp:22:
/usr/include/GL/glew.h:22688:52: note: previous declaration ‘void (* __glewGetFragmentMaterialivSGIX)(GLenum, GLenum, const GLint*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTMATERIALIVSGIXPROC __glewGetFragmentMaterialivSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
x86_64-pc-linux-gnu-g++ -march=broadwell -O2 -pipe -std=c++0x -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o /var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0-python2_7/temp.linux-x86_64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon
error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(lineptr, LINESIZE, data->file);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 [31;01m*[0m ERROR: sci-chemistry/pymol-2.2.0::gentoo failed (compile phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  124:  Called src_compile
 [31;01m*[0m   environment, line 3258:  Called distutils-r1_src_compile
 [31;01m*[0m   environment, line 1140:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  519:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2699:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2010:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2008:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  776:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 1131:  Called distutils-r1_python_compile
 [31;01m*[0m   environment, line 1005:  Called esetup.py 'build'
 [31;01m*[0m   environment, line 1435:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${@}" || die "${die_args[@]}";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-chemistry/pymol-2.2.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-chemistry/pymol-2.2.0::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/log/portage/sci-chemistry:pymol-2.2.0:20181128-130548.log'.
 [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/pymol-2.2.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pymol-2.2.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0'
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/pymol-2.2.0/work/pymol-open-source-2.2.0'
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12066:105: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTFVSGIXPROC)(GLenum, GLenum, const GLfloat*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTFVSGIXPROC) (GLenum light, GLenum pname, const GLfloat *params);
                                                                                                         ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18734:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTFVSGIXPROC)(GLenum, GLenum, GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTFVSGIXPROC) (GLenum light, GLenum pname, GLfloat* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12068:103: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTIVSGIXPROC)(GLenum, GLenum, const GLint*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTIVSGIXPROC) (GLenum light, GLenum pname, const GLint *params);
                                                                                                       ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18736:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTIVSGIXPROC)(GLenum, GLenum, GLint*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTIVSGIXPROC) (GLenum light, GLenum pname, GLint* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12070:96: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTMODELFVSGIXPROC)(GLenum, const GLfloat*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTMODELFVSGIXPROC) (GLenum pname, const GLfloat *params);
                                                                                                ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18730:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTMODELFVSGIXPROC)(GLenum, GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTMODELFVSGIXPROC) (GLenum pname, GLfloat* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12072:94: error: conflicting declaration ‘typedef void (* PFNGLFRAGMENTLIGHTMODELIVSGIXPROC)(GLenum, const GLint*)’
 typedef void (APIENTRYP PFNGLFRAGMENTLIGHTMODELIVSGIXPROC) (GLenum pname, const GLint *params);
                                                                                              ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18732:28: note: previous declaration as ‘typedef void (* PFNGLFRAGMENTLIGHTMODELIVSGIXPROC)(GLenum, GLint*)’
 typedef void (GLAPIENTRY * PFNGLFRAGMENTLIGHTMODELIVSGIXPROC) (GLenum pname, GLint* params);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12079:104: error: conflicting declaration ‘typedef void (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, GLfloat*)’
 typedef void (APIENTRYP PFNGLGETFRAGMENTMATERIALFVSGIXPROC) (GLenum face, GLenum pname, GLfloat *params);
                                                                                                        ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18743:28: note: previous declaration as ‘typedef void (* PFNGLGETFRAGMENTMATERIALFVSGIXPROC)(GLenum, GLenum, const GLfloat*)’
 typedef void (GLAPIENTRY * PFNGLGETFRAGMENTMATERIALFVSGIXPROC) (GLenum face, GLenum pname, const GLfloat* data);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12080:102: error: conflicting declaration ‘typedef void (* PFNGLGETFRAGMENTMATERIALIVSGIXPROC)(GLenum, GLenum, GLint*)’
 typedef void (APIENTRYP PFNGLGETFRAGMENTMATERIALIVSGIXPROC) (GLenum face, GLenum pname, GLint *params);
                                                                                                      ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:18744:28: note: previous declaration as ‘typedef void (* PFNGLGETFRAGMENTMATERIALIVSGIXPROC)(GLenum, GLenum, const GLint*)’
 typedef void (GLAPIENTRY * PFNGLGETFRAGMENTMATERIALIVSGIXPROC) (GLenum face, GLenum pname, const GLint* data);
                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12083:74: error: ‘void __glewFragmentColorMaterialSGIX(GLenum, GLenum)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentColorMaterialSGIX (GLenum face, GLenum mode);
                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22672:52: note: previous declaration ‘void (* __glewFragmentColorMaterialSGIX)(GLenum, GLenum)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTCOLORMATERIALSGIXPROC __glewFragmentColorMaterialSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12084:84: error: ‘void __glewFragmentLightfSGIX(GLenum, GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightfSGIX (GLenum light, GLenum pname, GLfloat param);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22677:45: note: previous declaration ‘void (* __glewFragmentLightfSGIX)(GLenum, GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTFSGIXPROC __glewFragmentLightfSGIX;
                                             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12085:93: error: ‘void __glewFragmentLightfvSGIX(GLenum, GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightfvSGIX (GLenum light, GLenum pname, const GLfloat *params);
                                                                                             ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22678:46: note: previous declaration ‘void (* __glewFragmentLightfvSGIX)(GLenum, GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTFVSGIXPROC __glewFragmentLightfvSGIX;
                                              ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12086:82: error: ‘void __glewFragmentLightiSGIX(GLenum, GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightiSGIX (GLenum light, GLenum pname, GLint param);
                                                                                  ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22679:45: note: previous declaration ‘void (* __glewFragmentLightiSGIX)(GLenum, GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTISGIXPROC __glewFragmentLightiSGIX;
                                             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12087:91: error: ‘void __glewFragmentLightivSGIX(GLenum, GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightivSGIX (GLenum light, GLenum pname, const GLint *params);
                                                                                           ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22680:46: note: previous declaration ‘void (* __glewFragmentLightivSGIX)(GLenum, GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTIVSGIXPROC __glewFragmentLightivSGIX;
                                              ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12088:75: error: ‘void __glewFragmentLightModelfSGIX(GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelfSGIX (GLenum pname, GLfloat param);
                                                                           ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22673:50: note: previous declaration ‘void (* __glewFragmentLightModelfSGIX)(GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELFSGIXPROC __glewFragmentLightModelfSGIX;
                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12089:84: error: ‘void __glewFragmentLightModelfvSGIX(GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelfvSGIX (GLenum pname, const GLfloat *params);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22674:51: note: previous declaration ‘void (* __glewFragmentLightModelfvSGIX)(GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELFVSGIXPROC __glewFragmentLightModelfvSGIX;
                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12090:73: error: ‘void __glewFragmentLightModeliSGIX(GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModeliSGIX (GLenum pname, GLint param);
                                                                         ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22675:50: note: previous declaration ‘void (* __glewFragmentLightModeliSGIX)(GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELISGIXPROC __glewFragmentLightModeliSGIX;
                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12091:82: error: ‘void __glewFragmentLightModelivSGIX(GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentLightModelivSGIX (GLenum pname, const GLint *params);
                                                                                  ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22676:51: note: previous declaration ‘void (* __glewFragmentLightModelivSGIX)(GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTLIGHTMODELIVSGIXPROC __glewFragmentLightModelivSGIX;
                                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12092:86: error: ‘void __glewFragmentMaterialfSGIX(GLenum, GLenum, GLfloat)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialfSGIX (GLenum face, GLenum pname, GLfloat param);
                                                                                      ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22681:48: note: previous declaration ‘void (* __glewFragmentMaterialfSGIX)(GLenum, GLenum, GLfloat)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALFSGIXPROC __glewFragmentMaterialfSGIX;
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12093:95: error: ‘void __glewFragmentMaterialfvSGIX(GLenum, GLenum, const GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialfvSGIX (GLenum face, GLenum pname, const GLfloat *params);
                                                                                               ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22682:49: note: previous declaration ‘void (* __glewFragmentMaterialfvSGIX)(GLenum, GLenum, const GLfloat*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALFVSGIXPROC __glewFragmentMaterialfvSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12094:84: error: ‘void __glewFragmentMaterialiSGIX(GLenum, GLenum, GLint)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialiSGIX (GLenum face, GLenum pname, GLint param);
                                                                                    ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22683:48: note: previous declaration ‘void (* __glewFragmentMaterialiSGIX)(GLenum, GLenum, GLint)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALISGIXPROC __glewFragmentMaterialiSGIX;
                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12095:93: error: ‘void __glewFragmentMaterialivSGIX(GLenum, GLenum, const GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glFragmentMaterialivSGIX (GLenum face, GLenum pname, const GLint *params);
                                                                                             ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22684:49: note: previous declaration ‘void (* __glewFragmentMaterialivSGIX)(GLenum, GLenum, const GLint*)’
 GLEW_FUN_EXPORT PFNGLFRAGMENTMATERIALIVSGIXPROC __glewFragmentMaterialivSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12096:90: error: ‘void __glewGetFragmentLightfvSGIX(GLenum, GLenum, GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentLightfvSGIX (GLenum light, GLenum pname, GLfloat *params);
                                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22685:49: note: previous declaration ‘void (* __glewGetFragmentLightfvSGIX)(GLenum, GLenum, GLfloat*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTLIGHTFVSGIXPROC __glewGetFragmentLightfvSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12097:88: error: ‘void __glewGetFragmentLightivSGIX(GLenum, GLenum, GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentLightivSGIX (GLenum light, GLenum pname, GLint *params);
                                                                                        ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22686:49: note: previous declaration ‘void (* __glewGetFragmentLightivSGIX)(GLenum, GLenum, GLint*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTLIGHTIVSGIXPROC __glewGetFragmentLightivSGIX;
                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12098:92: error: ‘void __glewGetFragmentMaterialfvSGIX(GLenum, GLenum, GLfloat*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentMaterialfvSGIX (GLenum face, GLenum pname, GLfloat *params);
                                                                                            ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22687:52: note: previous declaration ‘void (* __glewGetFragmentMaterialfvSGIX)(GLenum, GLenum, const GLfloat*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTMATERIALFVSGIXPROC __glewGetFragmentMaterialfvSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/os_gl.h:60,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glext.h:12099:90: error: ‘void __glewGetFragmentMaterialivSGIX(GLenum, GLenum, GLint*)’ redeclared as different kind of symbol
 GLAPI void APIENTRY glGetFragmentMaterialivSGIX (GLenum face, GLenum pname, GLint *params);
                                                                                          ^
In file included from layer0/os_gl.h:58,
                 from layer0/GraphicsUtil.h:3,
                 from layer0/GraphicsUtil.cpp:8:
/usr/include/GL/glew.h:22688:52: note: previous declaration ‘void (* __glewGetFragmentMaterialivSGIX)(GLenum, GLenum, const GLint*)’
 GLEW_FUN_EXPORT PFNGLGETFRAGMENTMATERIALIVSGIXPROC __glewGetFragmentMaterialivSGIX;
                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~