sci-mathematics:rstudio-1.1.453:20181014-053029.log

sci-mathematics:rstudio-1.1.453:20181014-053029.log (text/plain), 10.17 KB, created by Toralf Förster on 2018-10-14 11:30:10 UTC

 * Package:    sci-mathematics/rstudio-1.1.453
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using: icedtea-bin-8
>>> Unpacking source...
>>> Unpacking rstudio-1.1.453.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work
>>> Unpacking gwt-2.7.0.zip to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work
>>> Unpacking packrat-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/dependencies/common
>>> Unpacking rmarkdown-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/dependencies/common
>>> Unpacking shinyapps-0.98.1000.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/dependencies/common
>>> Unpacking rsconnect_0.4.1.4_fcac892a69817febd7b655b189bf57193260cda0.tar.gz to /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/dependencies/common
>>> Source unpacked in /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453 ...
 * Applying rstudio-0.99.879-prefs.patch ...
 [ ok ]
 * Applying rstudio-1.0.44-paths.patch ...
 [ ok ]
 * Applying rstudio-1.1.357-clang-pandoc.patch ...
 [ ok ]
 * Applying rstudio-0.98.490-linker_flags.patch ...
 [ ok ]
 * Applying rstudio-0.99.473-qtsingleapplication.patch ...
 [ ok ]
 * Applying rstudio-1.0.44-systemd.patch ...
 [ ok ]
 * Applying rstudio-1.1.453-boost-1.67.0.patch ...
 [ ok ]
 * Applying rstudio-1.1.453-core.patch ...
 [ ok ]
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/cpp/server/lib'
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/cpp/server/lib/systemd'
mkdir: created directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/cpp/server/lib/systemd/system'
'/var/tmp/portage/sci-mathematics/rstudio-1.1.453/files/rstudio-server.service.in' -> '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/cpp/server/lib/systemd/system/rstudio-server.service.in'
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build"
cmake -C /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DDISTRO_SHARE=share/rstudio -DRSTUDIO_INSTALL_FREEDESKTOP=ON -DRSTUDIO_TARGET=Desktop -DQT_QMAKE_EXECUTABLE=/usr/lib64/qt5/bin/qmake -DRSTUDIO_VERIFY_R_VERSION=FALSE -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453
loading initial cache file /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 8.2.0
-- The CXX compiler identification is GNU 8.2.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- LSB release: gentoo
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.65.0
-- Found the following Boost libraries:
--   date_time
--   filesystem
--   iostreams
--   program_options
--   regex
--   signals
--   system
--   thread
--   chrono
--   random
--   atomic
-- Using system Boost 1.63.0
-- Performing Test HAVE_SCANDIR_POSIX
-- Performing Test HAVE_SCANDIR_POSIX - Success
-- Looking for SA_NOCLDWAIT
-- Looking for SA_NOCLDWAIT - found
-- Looking for SO_PEERCRED
-- Looking for SO_PEERCRED - found
-- Looking for inotify_init1
-- Looking for inotify_init1 - found
-- Looking for getpeereid
-- Looking for getpeereid - not found
-- Looking for setresuid
-- Looking for setresuid - found
-- Found LibR: /usr/lib64/R  
-- Found R: /usr/lib64/R
CMake Deprecation Warning at src/cpp/desktop/CMakeLists.txt:18 (cmake_policy):
  The OLD behavior for policy CMP0020 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -O2 -pipe -march=native
C++             -O2 -pipe -march=native
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed
Module          -Wl,-O1 -Wl,--as-needed
Shared          -Wl,-O1 -Wl,--as-needed

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build"
make -j1 VERBOSE=1 
/usr/bin/cmake -H/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453 -B/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/CMakeFiles /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
make -f src/gwt/CMakeFiles/gwt_build.dir/build.make src/gwt/CMakeFiles/gwt_build.dir/depend
make[2]: Entering directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
cd /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453 /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/gwt /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt/CMakeFiles/gwt_build.dir/DependInfo.cmake
Dependee "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt/CMakeFiles/gwt_build.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt/CMakeFiles/gwt_build.dir/depend.internal".
Dependee "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build/src/gwt/CMakeFiles/gwt_build.dir/depend.internal".
Scanning dependencies of target gwt_build
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
make -f src/gwt/CMakeFiles/gwt_build.dir/build.make src/gwt/CMakeFiles/gwt_build.dir/build
make[2]: Entering directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
cd /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/gwt && ant
Buildfile: /var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453/src/gwt/build.xml
java.lang.NoSuchMethodError: org.apache.tools.ant.Project.setCoreLoader(Ljava/lang/ClassLoader;)V
	at org.apache.tools.ant.Main.runBuild(Main.java:765)
	at org.apache.tools.ant.Main.startAnt(Main.java:235)
	at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
	at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
org.apache.tools.ant.Project.setCoreLoader(Ljava/lang/ClassLoader;)V
make[2]: *** [src/gwt/CMakeFiles/gwt_build.dir/build.make:57: gwt_build] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
make[1]: *** [CMakeFiles/Makefile2:112: src/gwt/CMakeFiles/gwt_build.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
make: *** [Makefile:152: all] Error 2
 * ERROR: sci-mathematics/rstudio-1.1.453::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-mathematics/rstudio-1.1.453::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-mathematics/rstudio-1.1.453::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-mathematics:rstudio-1.1.453:20181014-053029.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453_build'
 * S: '/var/tmp/portage/sci-mathematics/rstudio-1.1.453/work/rstudio-1.1.453'
!!! When you file a bug report, please include the following information:
GENTOO_VM=icedtea-bin-8  CLASSPATH="" JAVA_HOME="/opt/icedtea-bin-3.9.0"
JAVACFLAGS="-source 1.8 -target 1.8" COMPILER=""
and of course, the output of emerge --info =rstudio-1.1.453