sci-biology:ucsc-genome-browser-260:20181002-083042.log

sci-biology:ucsc-genome-browser-260:20181002-083042.log (text/plain), 220.17 KB, created by Toralf Förster on 2018-10-02 15:08:59 UTC

 * Package:    sci-biology/ucsc-genome-browser-260
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux mysql server userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking jksrc.v260.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work
>>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work
>>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent ...
make -j1 -C src clean 
make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src'
ameme
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/ameme'
rm -f ameme.o fragFind.o a.out ameme.exe
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/ameme'
blat
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/blat'
rm -f testRna.psl testProt.psl testProtX.psl testRnaX.psl \
testFine.psl blat.o blat
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/blat'
cdnaAli
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/cdnaAli'
cd g2cCheck && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/cdnaAli/g2cCheck'
rm -f g2cCheck.o g2cCheck
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/cdnaAli/g2cCheck'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/cdnaAli'
index
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/index'
make[1]: Nothing to be done for 'clean'.
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/index'
reformat
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/reformat'
make[1]: Nothing to be done for 'clean'.
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/reformat'
xenoAli
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli'
cd bwana && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/bwana'
rm -f "bwana.o " "a.out"
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/bwana'
cd dynAlign && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/dynAlign'
rm -f "{O}" "a.out"
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/dynAlign'
cd stitcher && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/stitcher'
rm -f "stitcher.o " "a.out"
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli/stitcher'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/xenoAli'
dnaDust
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/dnaDust'
rm -f dnadust.o  dnadust.exe a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/dnaDust'
protDust
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/protDust'
rm -f protDust.o  protDust.exe a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/protDust'
idbQuery
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/idbQuery'
rm -f idbQuery.o  idbQuery.exe a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/idbQuery'
scanIntrons
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/scanIntrons'
rm -f scanIntrons.o scanIntrons.exe a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/scanIntrons'
tracks
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/tracks'
rm -f tracks.o  tracksWS120.exe
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/tracks'
weblet
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet'
cd counter && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet/counter'
rm -f counter.o  a.out counter
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet/counter'
cd hitreport && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet/hitreport'
rm -f hitreport.o  a.out hitreport.exe
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet/hitreport'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/weblet'
aladdin
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/aladdin'
cd aladdin && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/aladdin/aladdin'
rm -f aladdin.exe
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/aladdin/aladdin'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/aladdin'
getgene
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/getgene'
rm -f getgene.exe getgene.o  a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/getgene'
primeMate
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/primeMate'
rm -f primeMate.exe primeMate.o a.out
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/primeMate'
wormAli
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/wormAli'
rm -f wormAli.exe a.out wormAli.o 
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/wormAli'
fuse
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/fuse'
rm -f 
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/fuse'
cd lib && make clean 
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib'
rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o knetUdc.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o x86_64/jkweb.a
cd tests && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib/tests'
rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out fetchUrlTest
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib/tests'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib'
cd hg && make clean
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg'
cd lib && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lib'
rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o hgBam.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed8Attrs.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsNotes.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o bedDetail.o customFactory.o customPp.o customTrack.o cutter.o cv.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaMarkovSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/peptideMapping.o encode/tagAlign.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeTag.o encode/wgEncodeGencodePdb.o encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o encode/wgEncodeGencodeUniProt.o encode/wgEncodeGencodePolyAFeature.o encode/wgEncodeGencodeAnnotationRemark.o encode/encodeExp.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o fileUi.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o gwasCatalog.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hubConnect.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o makeItemsItem.o mammalPsg.o mapSts.o mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o samAlignment.o sample.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o search.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o sqlProg.o tfbsCons.o tfbsConsSites.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o validateGisaid.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o;
rm -f ../../lib/x86_64/jkhgap.a;
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lib'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/cartReset'
rm -f cartReset.o cartReset
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/cartReset'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/das'
rm -f das.o das
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/das'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgBlat'
rm -f hgBlat.o hgBlat
rm -f hgSs_*.fa hgSs_*.pslx
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgBlat'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgCgiData'
make[2]: 'clean' is up to date.
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgConvert'
rm -f hgConvert.o hgConvert
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgConvert'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgHubConnect'
rm -f hgHubConnect.o hgHubConnect
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgHubConnect'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGateway'
rm -f hgGateway.o hgGateway
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGateway'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGene'
rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rgdInfo.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o geneReviews.o hgGene
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGenome'
rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGenome'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgPcr'
rm -f hgPcr.o hgPcr
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgPcr'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSession'
rm -f hgSession.o hgSession
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSession'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSuggest'
rm -f hgSuggest.o hgSuggest
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSuggest'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTables'
rm -f hgTables.o asFilter.o bam.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o userRegions.o hgTables
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTables'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTracks'
rm -f mainMain.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o container.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o hgTracks.o goldTrack.o gvfTrack.o loweLabTracks.o mafTrack.o makeItemsTrack.o multiWig.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o  hgTracks
rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif
rm -f hgRenderTracks renderMain.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWarn.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o container.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o hgTracks.o goldTrack.o gvfTrack.o loweLabTracks.o mafTrack.o makeItemsTrack.o multiWig.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o searchTracks.o simpleTracks.o snakeTrack.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o vcfTrack.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTracks'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTrackUi'
rm -f hgTrackUi.o cgapSageUi.o encodePeakUi.o hgTrackUi
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTrackUi'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgc'
rm -f hgc.o bamClick.o bigBedClick.o dbRIP.o ccdsClick.o cgapSageClick.o encodeClick.o expClick.o gencodeClick.o gvfClick.o hgdpClick.o lowelab.o mafClick.o makeItemsClick.o mgcClick.o parClick.o peakClusters.o regMotif.o retroClick.o rnaFoldClick.o transMapClick.o txCdsInfo.o t2g.o vcfClick.o virusClick.o wiggleClick.o wikiTrack.o variomeClick.o hgc
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgc'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgApi'
rm -f hgApi.o hgApi
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgApi'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/cartDump'
rm -f cartDump.o cartDump
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/cartDump'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNear'
rm -f hgNear.o advFilter.o afiAli.o association.o colTemplate.o configure.o customColumn.o examples.o expRatio.o flyBase.o getSeq.o go.o intronSize.o knownGene.o order.o pfam.o search.o userSettings.o hgNear
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNear'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbGateway'
rm -f pbGateway.o pbGateway
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbGateway'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbTracks'
rm -f pbTracks.o pbTracks
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbTracks'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbGlobal'
rm -f pbGlobal.o pbGlobal
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbGlobal'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgLiftOver'
rm -f hgLiftOver.o hgLiftOver
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgLiftOver'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/visiGene/hgVisiGene'
rm -f hgVisiGene.o captionElement.o configPage.o printCaption.o probePage.o visiSearch.o hgVisiGene
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/visiGene/hgVisiGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/mkEncodeFrameset'
echo "nothing to clean here"
nothing to clean here
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/mkEncodeFrameset'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/hgEncodeDataVersions'
rm -f hgEncodeDataVersions.o hgEncodeDataVersions
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/hgEncodeDataVersions'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/hgEncodeVocab'
rm -f hgEncodeVocab.o hgEncodeVocab
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/hgEncodeVocab'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/phyloGif'
rm -f phyloGif.o phyloGif
rm -f test.gif testWeb.gif
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/phyloGif'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgCustom'
rm -f hgCustom.o hgCustom
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgCustom'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgPal'
rm -f hgPal.o hgPal
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgPal'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgFileUi'
rm -f hgFileUi.o hgFileUi
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgFileUi'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgFileSearch'
rm -f hgFileSearch.o hgFileSearch
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgFileSearch'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgCgiData'
make[2]: 'clean' is up to date.
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/js'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/js'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/htdocs/style'
make[2]: Nothing to be done for 'clean'.
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/htdocs/style'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadBed'
rm -f hgLoadBed.o hgLoadBed tests/bed.tab
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadBed'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadWiggle'
rm -f test_data/chr1_0.wib test_data/chr1_0.wig test_data/chr1_1.wib \
test_data/chr1_1.wig test_data/chr1_2.wib test_data/chr1_2.wig \
test_data/chr1_begin.ascii test_data/chr1_end.ascii \
test_data/chr1_middle.ascii test_data/chrM.ascii test_data/chrM.wib \
test_data/chrM.wig test_data/wiggle.tab \
hgLoadWiggle.o hgDumpWiggle.o hgWiggle.o hgWiggle wigEncode.o wigEncode hgLoadWiggle
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadWiggle'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadMaf'
rm -f hgLoadMaf.o hgLoadMafSummary.o hgLoadMaf hgLoadMafSummary tests/bed.tab
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgLoadMaf'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg'
cd hg && make clean_utils
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/affyTransciptome'
rm -f affyPairsToSample normalizeSampleFile avgTranscriptomeExps maxTranscriptomeExps scaleSampleFiles averageZoomLevels groupSamples
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/affyTransciptome'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpCloneCheck'
rm -f agpCloneCheck.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpCloneCheck'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpCloneList'
rm -f agpCloneList.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpCloneList'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpAllToFaFile'
rm -f agpAllToFaFile.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpAllToFaFile'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpToFa'
rm -f agpToFa.o agpToFa
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpToFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpToGl'
rm -f agpToGl.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/agpToGl'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice'
cd lib; make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/lib'
rm -f spliceGraph.o exonGraph.o heap.o altSpliceSite.o pfamDat.o affyProbe.o altProbe.o dMatrix.o splice.o mouseAPSetEventMap.o;
rm -f heapTest
rm -f ./x86_64/libSpliceGraph.a
rm -fr ./x86_64
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/lib'
cd altSplice; make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/altSplice'
rm -f sequenceForBed  altAnalysis altSplice orthoSplice agxToBed altSummary bedInGraph consForBed altPaths bedToExons genePredToPsl
cd tests; make clean
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/altSplice/tests'
rm -f input/chromTest.nib input/alt3Prime5PrimeCassAgx.psl \
input/simpleCass.psl tmp.agx input/altEndsStarts.psl \
input/altRetInt.psl input/mutExclusive.psl \
tmp.psl
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/altSplice/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice/altSplice'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/altSplice'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoDtd'
rm -f autoDtd.o
rm -f test/*/out.*
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoDtd'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoSql'
rm -f autoSql autoSql.o
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoSql/tests'
rm -rf output *.o testHarness dbLinkTest jsonTest
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoSql/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoSql'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoXml'
rm -f *.o
rm -rf test/*/out
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/autoXml'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedOrBlocks'
rm -f bedOrBlocks.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedOrBlocks'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedIntersect'
rm -f bedIntersect.o
(cd tests && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedIntersect/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedIntersect/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedIntersect'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedItemOverlapCount'
rm -f bedItemOverlapCount.o bedItemOverlapCount
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedItemOverlapCount'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedSort'
rm -f bedSort bedSort.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedSort'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedToGenePred'
rm -f bedToGenePred.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedToGenePred'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedSplitOnChrom'
rm -f bedSplitOnChrom.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/bedSplitOnChrom'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/blastToPsl'
rm -f tests/output blastToPsl.o pslBuild.o blastXmlToPsl.o ncbiBlast.o pslBuild.o
rm -f blastXmlToPsl blastToPsl
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/blastToPsl'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/borfBig'
rm -f borfBig.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/borfBig'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkCoverageGaps'
rm -f checkCoverageGaps checkCoverageGaps.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkCoverageGaps'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkHgFindSpec'
rm -f checkHgFindSpec.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkHgFindSpec'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkTableCoords'
rm -f checkTableCoords *.o
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkTableCoords/tests'
rm -fr output
rm -f *.tab
hgsql test -e 'drop table chromInfo;' > /dev/null 2>&1; /bin/true
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkTableCoords/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/checkTableCoords'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ctgFaToFa'
rm -f ctgFaToFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ctgFaToFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ctgToChromFa'
rm -f ctgToChromFa.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ctgToChromFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/dbTrash'
rm -f dbTrash.o dbTrash
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/dbTrash'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/estOrient'
rm -f estOrient.o estOrient estOrient
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/estOrient/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/estOrient/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/estOrient'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/embossToPsl'
rm -f embossToPsl.o embossToPsl
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/embossToPsl/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/embossToPsl/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/embossToPsl'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/validateFiles'
rm -f validateFiles.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/encode/validateFiles'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fakeFinContigs'
rm -f fakeFinContigs.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fakeFinContigs'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fakeOut'
rm -f fakeOut.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fakeOut'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/featureBits'
rm -f featureBits featureBits.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/featureBits'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ffaToFa'
rm -f ffaToFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ffaToFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fishClones'
rm -f fishClones fishClones.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fishClones'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fqToQa'
rm -f fqToQa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fqToQa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fqToQac'
rm -f fqToQac.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fqToQac'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fragPart'
rm -f fragPart.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/fragPart'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbGetEntries'
(cd tests && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbGetEntries/tests'
rm -fr output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbGetEntries/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbGetEntries'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbOneAcc'
rm -f gbOneAcc.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbOneAcc'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbToFaRa'
rm -f gbToFaRa gbToFaRa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gbToFaRa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds'
( cd assessLibs && echo assessLibs && make clean )
assessLibs
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/assessLibs'
rm -f assessLibs.o 
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/assessLibs'
( cd averagExp && echo averagExp && make clean )
averagExp
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/averagExp'
rm -f averagExp.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/averagExp'
( cd axtForEst && echo axtForEst && make clean )
axtForEst
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/axtForEst'
rm -f axtForEst.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/axtForEst'
( cd bedCons && echo bedCons && make clean )
bedCons
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/bedCons'
rm -f bedCons.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/bedCons'
( cd checkableBorf && echo checkableBorf && make clean )
checkableBorf
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/checkableBorf'
rm -f checkableBorf.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/checkableBorf'
( cd clusterGenes && echo clusterGenes && make clean )
clusterGenes
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterGenes'
rm -f clusterGenes.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterGenes/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterGenes/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterGenes'
( cd clusterPsl && echo clusterPsl && make clean )
clusterPsl
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterPsl'
rm -f clusterPsl.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterPsl'
( cd clusterRna && echo clusterRna && make clean )
clusterRna
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterRna'
rm -f clusterRna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/clusterRna'
( cd dnaMotifFind && echo dnaMotifFind && make clean )
dnaMotifFind
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/dnaMotifFind'
rm -f dnaMotifFind.o 
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/dnaMotifFind'
( cd eisenInput && echo eisenInput && make clean )
eisenInput
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/eisenInput'
rm -f eisenInput.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/eisenInput'
( cd emblMatrixToMotif && echo emblMatrixToMotif && make clean )
emblMatrixToMotif
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/emblMatrixToMotif'
rm -f emblMatrixToMotif.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/emblMatrixToMotif'
( cd estLibStats && echo estLibStats && make clean )
estLibStats
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/estLibStats'
rm -f estLibStats.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/estLibStats'
( cd expToRna && echo expToRna && make clean )
expToRna
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/expToRna'
rm -f expToRna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/expToRna'
( cd iriToControlTable && echo iriToControlTable && make clean )
iriToControlTable
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/iriToControlTable'
rm -f iriToControlTable.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/iriToControlTable'
( cd iriToDnaMotif && echo iriToDnaMotif && make clean )
iriToDnaMotif
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/iriToDnaMotif'
rm -f iriToDnaMotif.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/iriToDnaMotif'
( cd lib && echo lib && make clean )
lib
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/lib'
rm -f improbRunInfo.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/lib'
( cd liftPromoHits && echo liftPromoHits && make clean )
liftPromoHits
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/liftPromoHits'
rm -f liftPromoHits.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/liftPromoHits'
( cd motifLogo && echo motifLogo && make clean )
motifLogo
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/motifLogo'
rm -f motifLogo.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/motifLogo'
( cd motifSig && echo motifSig && make clean )
motifSig
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/motifSig'
rm -f motifSig.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/motifSig'
( cd orf && echo orf && make clean )
orf
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/orf'
rm -f orf.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/orf'
( cd orfStats && echo orfStats && make clean )
orfStats
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/orfStats'
rm -f orfStats.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/orfStats'
( cd polyInfo && echo polyInfo && make clean )
polyInfo
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/polyInfo'
rm -f polyInfo.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/polyInfo'
( cd promoSeqFromCluster && echo promoSeqFromCluster && make clean )
promoSeqFromCluster
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/promoSeqFromCluster'
rm -f promoSeqFromCluster.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/promoSeqFromCluster'
( cd raToCds && echo raToCds && make clean )
raToCds
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/raToCds'
rm -f raToCds.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/raToCds'
( cd twinOrf && echo twinOrf && make clean )
twinOrf
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf'
rm -f twinOrf.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf'
( cd twinOrf2 && echo twinOrf2 && make clean )
twinOrf2
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf2'
rm -f twinOrf2.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf2'
( cd twinOrf3 && echo twinOrf3 && make clean )
twinOrf3
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf3'
rm -f twinOrf3.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrf3'
( cd twinOrfStats && echo twinOrfStats && make clean )
twinOrfStats
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats'
rm -f twinOrfStats.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats'
( cd twinOrfStats2 && echo twinOrfStats2 && make clean )
twinOrfStats2
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats2'
rm -f twinOrfStats2.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats2'
( cd twinOrfStats3 && echo twinOrfStats3 && make clean )
twinOrfStats3
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats3'
rm -f twinOrfStats3.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds/twinOrfStats3'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/geneBounds'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredCheck'
rm -f genePredCheck.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredCheck'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredHisto'
rm -fr tests/output genePredHisto genePredHisto.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredHisto'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredSingleCover'
rm -fr tests/output genePredSingleCover *.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredSingleCover'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToGtf'
rm -f genePredToGtf.o  genePredToGtf
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToGtf/tests'
rm -rf output bigout
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToGtf/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToGtf'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToFakePsl'
rm -f genePredToFakePsl.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToFakePsl'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToMafFrames'
rm -fr tests/output genePredToMafFrames *.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/genePredToMafFrames'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getFeatDna'
rm -f getFeatDna.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getFeatDna'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getRna'
rm -f getRna.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getRna'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getRnaPred'
rm -f getRnaPred.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/getRnaPred'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gigAssembler/checkAgpAndFa'
rm -rf *.o ./checkAgpAndFa tests/output
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gigAssembler/checkAgpAndFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpStats'
rm -f gpStats.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpStats'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpToGtf'
rm -f gpToGtf.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpToGtf'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpcrParser'
rm -f gpcrParser gpcrParser.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gpcrParser'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gsBig'
rm -f gsBig.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/gsBig'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTablesTest'
rm -f hgTablesTest.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgTablesTest'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgChroms'
rm -f hgChroms.o hgChroms /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/destdir/opt/ucsc-genome-browser/bin/hgChroms
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgChroms'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGetAnn'
rm -f hgGetAnn.o
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGetAnn/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGetAnn/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgGetAnn'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgKnownGeneList'
rm -f *.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgKnownGeneList'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSelect'
rm -f hgSelect.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSelect'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSpeciesRna'
rm -f hgSpeciesRna.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgSpeciesRna'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsql'
rm -f hgsql.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsql'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlLocal'
rm -f hgsqlLocal.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlLocal'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqladmin'
rm -f hgsqladmin.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqladmin'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqldump'
rm -f hgsqldump.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqldump'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqldumpLocal'
rm -f hgsqldumpLocal.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqldumpLocal'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlimport'
rm -f hgsqlimport.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlimport'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlSwapTables'
rm -f hgsqlSwapTables hgsqlSwapTables.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlSwapTables'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlTableDate'
rm -f hgsqlTableDate hgsqlTableDate.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/hgsqlTableDate'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/intronEnds'
rm -f intronEnds.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/intronEnds'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lib'
rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o hgBam.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed8Attrs.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsNotes.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o bedDetail.o customFactory.o customPp.o customTrack.o cutter.o cv.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaMarkovSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/peptideMapping.o encode/tagAlign.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeTag.o encode/wgEncodeGencodePdb.o encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o encode/wgEncodeGencodeUniProt.o encode/wgEncodeGencodePolyAFeature.o encode/wgEncodeGencodeAnnotationRemark.o encode/encodeExp.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o fileUi.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o gwasCatalog.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hubConnect.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o makeItemsItem.o mammalPsg.o mapSts.o mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o samAlignment.o sample.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o search.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o sqlProg.o tfbsCons.o tfbsConsSites.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o validateGisaid.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o;
rm -f ../../lib/x86_64/jkhgap.a;
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lib'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAcross'
rm -f liftAcross.o liftAcross
(cd tests && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAcross/tests'
rm -fr testOutput.gp testErr.out testOut.bed
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAcross/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAcross'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAgp'
rm -f liftAgp
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftAgp'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftFrags'
rm -f liftFrags.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftFrags'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftOver'
rm -f liftOver liftOver.o liftOverMerge liftOverMerge.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftOver'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftUp'
rm -f liftUp.o liftUp
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/liftUp'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lfsOverlap'
rm -f lfsOverlap.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/lfsOverlap'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb'
cd hgTomRough && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgTomRough'
rm -f hgTomRough hgTomRough.o tomRough.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb/hgTomRough'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/makeDb'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/maskOutFa'
rm -f maskOutFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/maskOutFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mdToNcbiLift'
rm -f mdToNcbiLift.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mdToNcbiLift'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mouseStuff'
cd simpleChain && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mouseStuff/simpleChain'
rm -f simpleChain simpleChain.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mouseStuff/simpleChain'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mouseStuff'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mrnaToGene'
rm -f mrnaToGene.o
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mrnaToGene/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mrnaToGene/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/mrnaToGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgCeOrfToGene'
rm -f hgCeOrfToGene.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgCeOrfToGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgClusterGenes'
rm -f hgClusterGenes.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgClusterGenes'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgEmblProtLinks'
rm -f hgEmblProtLinks.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgEmblProtLinks'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgExpDistance'
rm -f hgExpDistance*.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgExpDistance'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgGoAssociation'
rm -f hgGoAssociation.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgGoAssociation'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgKnownToSuper'
rm -f hgKnownToSuper.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgKnownToSuper'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgMapToGene'
rm -f hgMapToGene.o hgMapToGene
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgMapToGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgMapViaSwissProt'
rm -f hgMapViaSwissProt.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgMapViaSwissProt'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgProtIdToGenePred'
rm -f hgProtIdToGenePred.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgProtIdToGenePred'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgWormLinks'
rm -f hgWormLinks.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgWormLinks'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/pepPredToFa'
rm -f pepPredToFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/pepPredToFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNearTest'
rm -f hgNearTest.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNearTest'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNetDist'
rm -f hgNetDist.o hprdP2p.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/hgNetDist'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/knownToHprd'
rm -f knownToHprd.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/near/knownToHprd'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/nci60'
rm -fr findStanAlignments  stanToBedAndExpRecs  
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/nci60'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/orthoMap'
rm -f mgcFastaForBed agxToIntronBeds bedToFrames orthoMap orthoEvaluate orthoPickIntron  *.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/orthoMap'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/patCount'
rm -f patCount.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/patCount'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/perf'
rm -f hgTracksRandom.o rangeQuery.o rangeQuery hgTracksRandom
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/perf'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein'
(cd blastRecipBest && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/blastRecipBest'
rm -f blastRecipBest.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/blastRecipBest'
(cd gadPos && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/gadPos'
rm -f gadPos.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/gadPos'
(cd hmmPfamToTab && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/hmmPfamToTab'
rm -f hmmPfamToTab.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/hmmPfamToTab'
(cd kgAliasM && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasM'
rm -f kgAliasM.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasM'
(cd kgAliasP && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasP'
rm -f kgAliasP.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasP'
(cd kgAliasKgXref && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasKgXref'
rm -f kgAliasKgXref.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasKgXref'
(cd kgAliasRefseq && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasRefseq'
rm -f kgAliasRefseq.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgAliasRefseq'
(cd kgProtAlias && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgProtAlias'
rm -f kgProtAlias.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgProtAlias'
(cd kgProtAliasNCBI && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgProtAliasNCBI'
rm -f kgProtAliasNCBI.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgProtAliasNCBI'
(cd kgBestMrna2 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgBestMrna2'
rm -f kgPrepBestMrna2.o kgPrepBestMrna2 kgResultBestMrna2.o kgResultBestMrna2
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgBestMrna2'
(cd kgBestRef2 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgBestRef2'
rm -f kgPrepBestRef2.o kgPrepBestRef2 kgResultBestRef2.o kgResultBestRef2
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgBestRef2'
(cd kgCheck && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgCheck'
rm -f kgCheck.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgCheck'
(cd kgGetCds && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgGetCds'
rm -f kgGetCds.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgGetCds'
(cd kgGetPep && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgGetPep'
rm -f kgGetPep.o kgGetPep
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgGetPep'
(cd kgPepMrna && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPepMrna'
rm -f kgPepMrna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPepMrna'
(cd kgPick && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPick'
rm -f kgPick.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPick'
(cd kgPutBack && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPutBack'
rm -f kgPutBack.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgPutBack'
(cd kgXref && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgXref'
rm -f kgXref.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgXref'
(cd kgXref2 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgXref2'
rm -f kgXref2.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/kgXref2'
(cd pbCalDist && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalDist'
rm -f pbCalDist.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalDist'
(cd pbCalDistGlobal && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalDistGlobal'
rm -f pbCalDistGlobal.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalDistGlobal'
(cd pbCalPi && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalPi'
rm -f pbCalPi.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalPi'
(cd pbCalResStd && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalResStd'
rm -f pbCalResStd.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalResStd'
(cd pbCalResStdGlobal && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalResStdGlobal'
rm -f pbCalResStdGlobal.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbCalResStdGlobal'
(cd pbHgnc && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbHgnc'
rm -f pbHgnc.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pbHgnc'
(cd pfamXref && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pfamXref'
rm -f pfamXref.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/pfamXref'
(cd rmKGPepMrna && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/rmKGPepMrna'
rm -f rmKGPepMrna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/rmKGPepMrna'
(cd scopCollapse && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/scopCollapse'
rm -f scopCollapse.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/scopCollapse'
(cd spDbAddVarSplice && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spDbAddVarSplice'
rm -f spDbAddVarSplice.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spDbAddVarSplice'
(cd spOrganism && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spOrganism'
rm -f spOrganism.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spOrganism'
(cd spTest && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spTest'
rm -fr output spTest.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spTest'
(cd spToDb && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToDb'
rm -f spToDb.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToDb'
(cd spLoadPsiBlast && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spLoadPsiBlast'
rm -f spLoadPsiBlast.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spLoadPsiBlast'
(cd spLoadRankProp && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spLoadRankProp'
rm -f spLoadRankProp.o rankPropProt.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spLoadRankProp'
(cd spToProteinsVar && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToProteinsVar'
rm -f spToProteinsVar.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToProteinsVar'
(cd spToSpXref2 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToSpXref2'
rm -f spToSpXref2.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToSpXref2'
(cd spXref3 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spXref3'
rm -f spXref3.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spXref3'
(cd spm3 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm3'
rm -f spm3.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm3'
(cd spm6 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm6'
rm -f spm6.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm6'
(cd spm7 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm7'
rm -f spm7.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spm7'
(cd spToProteins && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToProteins'
rm -f spToProteins.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein/spToProteins'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/protein'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCDnaFilter'
rm -f cDnaAligns.o cDnaStats.o cDnaReader.o overlapFilter.o globalNearBestFilter.o localNearBestFilter.o polyASize.o hapRegions.o pslCDnaFilter.o pslCDnaFilter usage.msg algo.msg
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCDnaFilter/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCDnaFilter/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCDnaFilter'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCat'
rm -f pslCat.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCat'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCheck'
rm -f pslCheck.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCheck'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCoverage'
rm -f pslCoverage.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslCoverage'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDiff'
rm -f pslSets.o pslDiff.o  pslDiff
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDiff/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDiff/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDiff'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDropOverlap'
rm -f pslDropOverlap.o  pslDropOverlap
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslDropOverlap'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslFilter'
rm -f pslFilter.o  pslFilter
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslFilter'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslFilterPrimers'
rm -f pslFilterPrimers.o pslFilterPrimers
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslFilterPrimers'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslGlue'
rm -f pslGlue.o  pslGlue
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslGlue'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHisto'
rm -f pslHisto.o  pslHisto
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHisto/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHisto/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHisto'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHitPercent'
rm -f pslHitPercent.o  pslHitPercent
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslHitPercent'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslIntronsOnly'
rm -f pslIntronsOnly.o  pslIntronsOnly
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslIntronsOnly'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPartition'
rm -fr tests/output pslPartition pslPartition.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPartition'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPairs'
rm -f pslPairs pslPairs.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPairs'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPretty'
rm -f pslPretty.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslPretty'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslQuickFilter'
rm -f pslQuickFilter.o pslQuickFilter
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslQuickFilter'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslRecalcMatch'
rm -f pslRecalcMatch.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslRecalcMatch'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslReps'
rm -f pslReps.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslReps'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSelect'
rm -f pslSelect.o 
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSelect/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSelect/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSelect'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSimp'
rm -f pslSimp.o  pslSimp
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSimp'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSort'
rm -f pslSort.o pslSort
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSort'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSortAcc'
rm -f pslSortAcc.o pslSortAcc
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSortAcc'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSplitOnTarget'
rm -f pslSplitOnTarget.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSplitOnTarget'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslStats'
rm -f pslStats.o 
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslStats/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslStats/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslStats'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSwap'
rm -f pslSwap 
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSwap/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSwap/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslSwap'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslToBed'
rm -f pslToBed.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslToBed'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslUnpile'
rm -f pslUnpile.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslUnpile'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslxToFa'
rm -f pslxToFa.o pslxToFa
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/pslxToFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qa'
rm -f apacheMonitor.o checkCardinality.o countNib.o \
dumpNib.o gbSeqCheck.o reviewIndexes.o seqCheck.o \
getChroms.o checkChain.o testSearch.o timePosTable.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qaToQac'
rm -f qaToQac.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qaToQac'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacAgpLift'
rm -f qacAgpLift.o qacAgpLift
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacAgpLift'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacToQa'
rm -f qacToQa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacToQa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacToWig'
rm -f qacToWig.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/qacToWig'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff'
mafAddIRows
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafAddIRows'
rm -f mafAddIRows.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafAddIRows'
mafAddQRows
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafAddQRows'
rm -f mafAddQRows.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafAddQRows'
mafFilter
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFilter'
rm -f mafFilter.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFilter'
mafFrag
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFrag'
rm -f mafFrag.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFrag'
mafFrags
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFrags'
rm -fr output mafFrags.o mafFrags
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafFrags'
mafGene
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafGene'
rm -f mafGene.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafGene'
mafMeFirst
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafMeFirst'
rm -f mafMeFirst.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafMeFirst'
mafSpeciesList
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSpeciesList'
rm -f mafSpeciesList.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSpeciesList'
mafSpeciesSubset
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSpeciesSubset'
rm -f mafSpeciesSubset.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSpeciesSubset'
mafSplit
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSplit'
rm -f mafSplit.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSplit'
mafSplitPos
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSplitPos'
rm -f mafSplitPos.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafSplitPos'
mafsInRegion
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafsInRegion'
rm -f mafsInRegion.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafsInRegion'
mafOrder
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafOrder'
rm -f mafOrder.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/mafOrder'
stageMultiz
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/stageMultiz'
rm -f stageMultiz.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff/stageMultiz'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/ratStuff'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/relPairs'
rm -f relPairs.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/relPairs'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb'
cd bedUp && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb/bedUp'
rm -f bedUp.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb/bedUp'
cd bedDown && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb/bedDown'
rm -f bedDown.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb/bedDown'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/recycleDb'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/reviewSanity'
rm -f reviewSanity.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/reviewSanity'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure'
( cd hgLoadRnaFold && echo hgLoadRnaFold && make clean )
hgLoadRnaFold
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/hgLoadRnaFold'
rm -f hgLoadRnaFold.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/hgLoadRnaFold'
( cd rnaFoldBig && echo rnaFoldBig && make clean )
rnaFoldBig
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/rnaFoldBig'
rm -f rnaFoldBig.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/rnaFoldBig'
( cd utrFa && echo utrFa && make clean )
utrFa
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/utrFa'
rm -f utrFa.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure/utrFa'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/rnaStructure'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sage'
rm -f addAveMedScoreToPsls.o createSageSummary.o addAveMedScoreToPsls createSageSummary
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sage'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/scanRa'
rm -f scanRa.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/scanRa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/semiNorm'
rm -f semiNorm.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/semiNorm'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sim4big'
rm -f sim4big.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sim4big'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snpException'
rm -f snpException.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snpException'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp'
cleaning snpLoad
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpLoad'
rm -f affyLookup.o cnpLookup.o fetchSeq.o hapmap1.o hapmap2.o hapmapLookup.o hapmapMixed.o hapmapOrtho.o hapmapSummary.o hapmapValidate.o illuminaLookup.o illuminaLookup2.o illuminaLookup1M.o snpCheckAlleles.o snpCheckClassAndObserved.o snpCheckCluster.o snpCheckCluster2.o snpClassAndObserved.o snpCleanSeq.o snpCompareLoctype.o snpCompareWeight.o snpContigLocFilter.o snpContigLocFilter125.o snpContigLocusIdCondense.o snpContigLocusIdFilter.o snpContigLocusIdFilter125.o snpExpandAllele.o snpFinalTable.o snpFreq.o snpFunction.o snpGetDeletions.o snpGetInsertions.o snpGetSeqDup.o snpGetSimple.o snpLoadFasta.o snpLocType.o snpLocType125.o snpMissing.o snpMoltype.o snpMultiple.o snpOrtho.o snpOrthoJoin.o snpOrthoLookup.o snpPAR.o snpReadFasta.o snpReadSeq.o snpReadSeq2.o snpRefUCSC.o snpSort.o snpSplitByChrom.o snpSplitByChrom2.o snpSNP.o subSnpCondense.o trimHeader.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpLoad'
cleaning snpMask
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpMask'
rm -f snpMapToExon.o snpMaskChrom.o snpMaskFlank.o snpMaskFlankSubset.o snpMaskGenes.o seqWithInsertions.o seqWithoutDeletions.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpMask'
cleaning snpValid
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpValid'
rm -f snpValid.o
rm -f snpValid
rm -f *.log
rm -f dump
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp/snpValid'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/snp'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/spideyToPsl'
rm -f spideyToPsl.o spideyToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl
cd tests && make clean
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/spideyToPsl/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/spideyToPsl/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/spideyToPsl'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/splitFa'
rm -f splitFa.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/splitFa'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/splitFaIntoContigs'
rm -f *.o /var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/destdir/opt/ucsc-genome-browser/bin/splitFaIntoContigs ./splitFaIntoContigs
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/splitFaIntoContigs'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sqlToXml'
rm -f sqlToXml.o
rm -f test/*/out.*
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/sqlToXml'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/test'
rm -f test test.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/test'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/trfBig'
rm -f trfBig.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/trfBig'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds'
( cd txCdsBadBed && echo txCdsBadBed && make clean )
txCdsBadBed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsBadBed'
rm -f txCdsBadBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsBadBed'
( cd txCdsCluster && echo txCdsCluster && make clean )
txCdsCluster
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsCluster'
rm -f txCdsCluster.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsCluster'
( cd txCdsEvFromBed && echo txCdsEvFromBed && make clean )
txCdsEvFromBed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromBed'
rm -f txCdsEvFromBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromBed'
( cd txCdsEvFromBorf && echo txCdsEvFromBorf && make clean )
txCdsEvFromBorf
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromBorf'
rm -f txCdsEvFromBorf.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromBorf'
( cd txCdsEvFromProtein && echo txCdsEvFromProtein && make clean )
txCdsEvFromProtein
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromProtein'
rm -f txCdsEvFromProtein.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromProtein'
( cd txCdsEvFromRna && echo txCdsEvFromRna && make clean )
txCdsEvFromRna
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromRna'
rm -f txCdsEvFromRna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsEvFromRna'
( cd txCdsGoodBed && echo txCdsGoodBed && make clean )
txCdsGoodBed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsGoodBed'
rm -f txCdsGoodBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsGoodBed'
( cd txCdsOrfInfo && echo txCdsOrfInfo && make clean )
txCdsOrfInfo
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsOrfInfo'
rm -f txCdsOrfInfo.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsOrfInfo'
( cd txCdsOrtho && echo txCdsOrtho && make clean )
txCdsOrtho
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsOrtho'
rm -f txCdsOrtho.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsOrtho'
( cd txCdsPick && echo txCdsPick && make clean )
txCdsPick
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsPick'
rm -f txCdsPick.o  
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsPick'
( cd txCdsPredict && echo txCdsPredict && make clean )
txCdsPredict
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsPredict'
rm -f txCdsPredict.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsPredict'
( cd txCdsRaExceptions && echo txCdsRaExceptions && make clean )
txCdsRaExceptions
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRaExceptions'
rm -f txCdsRaExceptions.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRaExceptions'
( cd txCdsRefBestEvOnly && echo txCdsRefBestEvOnly && make clean )
txCdsRefBestEvOnly
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRefBestEvOnly'
rm -f txCdsRefBestEvOnly.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRefBestEvOnly'
( cd txCdsRepick && echo txCdsRepick && make clean )
txCdsRepick
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRepick'
rm -f txCdsRepick.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsRepick'
( cd txCdsSuspect && echo txCdsSuspect && make clean )
txCdsSuspect
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsSuspect'
rm -f txCdsSuspect.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsSuspect'
( cd txCdsSvmInput && echo txCdsSvmInput && make clean )
txCdsSvmInput
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsSvmInput'
rm -f txCdsSvmInput.o 
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsSvmInput'
( cd txCdsToGene && echo txCdsToGene && make clean )
txCdsToGene
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsToGene'
rm -f txCdsToGene.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsToGene'
( cd txCdsWeed && echo txCdsWeed && make clean )
txCdsWeed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsWeed'
rm -f txCdsWeed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txCdsWeed'
( cd txInfoAssemble && echo txInfoAssemble && make clean )
txInfoAssemble
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txInfoAssemble'
rm -f txInfoAssemble.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds/txInfoAssemble'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txCds'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene'
txGenbankData
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGenbankData'
make[3]: Nothing to be done for 'clean'.
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGenbankData'
txGeneAccession
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAccession'
rm -f txGeneAccession.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAccession'
txGeneAlias
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAlias'
rm -f txGeneAlias.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAlias'
txGeneAltProt
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAltProt'
rm -f txGeneAltProt.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneAltProt'
txGeneCanonical
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneCanonical'
rm -f txGeneCanonical.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneCanonical'
txGeneCdsMap
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneCdsMap'
rm -f txGeneCdsMap.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneCdsMap'
txGeneColor
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneColor'
rm -f txGeneColor.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneColor'
txGeneExplainUpdate1
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneExplainUpdate1'
rm -f txGeneExplainUpdate1.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneExplainUpdate1'
txGeneFromBed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneFromBed'
rm -f txGeneFromBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneFromBed'
txGeneProtAndRna
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneProtAndRna'
rm -f txGeneProtAndRna.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneProtAndRna'
txGeneSeparateNoncoding
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneSeparateNoncoding'
rm -f txGeneSeparateNoncoding.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneSeparateNoncoding'
txGeneValidation
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneValidation'
make[3]: Nothing to be done for 'clean'.
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneValidation'
txGeneXref
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneXref'
rm -f txGeneXref.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene/txGeneXref'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph'
agxToTxg
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/agxToTxg'
rm -f agxToTxg.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/agxToTxg'
bedToTxEdges
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/bedToTxEdges'
rm -f bedToTxEdges.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/bedToTxEdges'
txAbFragFind
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txAbFragFind'
rm -f txAbFragFind.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txAbFragFind'
txBedToGraph
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txBedToGraph'
rm -f txBedToGraph.o makeGraph.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txBedToGraph'
txOrtho
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txOrtho'
rm -f txOrtho.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txOrtho'
txPslFilter
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txPslFilter'
rm -f txPslFilter.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txPslFilter'
txPslToBed
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txPslToBed'
rm -f txPslToBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txPslToBed'
txReadRa
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txReadRa'
rm -f txReadRa.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txReadRa'
txWalk
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txWalk'
rm -f txWalk.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txWalk'
txgAddEvidence
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgAddEvidence'
rm -f txgAddEvidence.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgAddEvidence'
txgAnalyze
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgAnalyze'
rm -f txgAnalyze.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgAnalyze'
txgGoodEdges
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgGoodEdges'
rm -f txgGoodEdges.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgGoodEdges'
txgToAgx
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgToAgx'
rm -f txgToAgx.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgToAgx'
txgToXml
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgToXml'
rm -f txgToXml.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgToXml'
txgTrim
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgTrim'
rm -f txgTrim.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph/txgTrim'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/txGraph'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils'
(cd bedToPsl && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedToPsl'
rm -f bedToPsl.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedToPsl/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedToPsl/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedToPsl'
(cd bedWeedOverlapping && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedWeedOverlapping'
rm -f bedWeedOverlapping.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/bedWeedOverlapping'
(cd chromGraphFromBin && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/chromGraphFromBin'
rm -f chromGraphFromBin.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/chromGraphFromBin'
(cd chromGraphToBin && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/chromGraphToBin'
rm -f chromGraphToBin.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/chromGraphToBin'
(cd crTreeIndexBed && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/crTreeIndexBed'
rm -f crTreeIndexBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/crTreeIndexBed'
(cd crTreeSearchBed && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/crTreeSearchBed'
rm -f crTreeSearchBed.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/crTreeSearchBed'
(cd gapToLift && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gapToLift'
rm -f gapToLift.o gapToLift
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gapToLift'
(cd hubCheck && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/hubCheck'
rm -f hubCheck hubCheck.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/hubCheck'
(cd hubPublicCheck && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/hubPublicCheck'
rm -f hubPublicCheck hubPublicCheck.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/hubPublicCheck'
(cd oligoMatch && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/oligoMatch'
rm -f oligoMatch.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/oligoMatch'
(cd positionalTblCheck && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/positionalTblCheck'
rm -f positionalTblCheck.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/positionalTblCheck'
(cd safePush && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/safePush'
rm -f safePush.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/safePush'
(cd toDev64 && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/toDev64'
rm -f toDev64.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/toDev64'
(cd twoBitMask && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/twoBitMask'
rm -f twoBitMask.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/twoBitMask'
(cd gff3ToGenePred && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToGenePred'
rm -f gff3ToGenePred gff3ToGenePred.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToGenePred/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToGenePred/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToGenePred'
(cd gff3ToPsl && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToPsl'
rm -f gff3ToPsl gff3ToPsl.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToPsl/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToPsl/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gff3ToPsl'
(cd gtfToGenePred && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gtfToGenePred'
rm -f gtfToGenePred.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gtfToGenePred/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gtfToGenePred/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/gtfToGenePred'
(cd automation && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/automation'
nothing to clean in src/hg/utils/automation/
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/automation'
(cd refreshNamedSessionCustomTracks && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refreshNamedSessionCustomTracks'
rm -f refreshNamedSessionCustomTracks.o refreshNamedSessionCustomTracks
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refreshNamedSessionCustomTracks'
(cd refSeqGet && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refSeqGet'
rm -f refSeqGet refSeqVerInfo.o refSeqGet.o
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refSeqGet/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refSeqGet/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/refSeqGet'
(cd tdbQuery && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/tdbQuery'
rm -f tdbQuery tdbQuery.o tdbRecord.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/tdbQuery'
(cd wigBedToStep && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/wigBedToStep'
rm -f wigBedToStep.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/wigBedToStep'
(cd overlapSelect && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/overlapSelect'
rm -f rowReader.o chromAnn.o chromAnnMap.o selectTable.o coordCols.o  overlapSelect.o  usage.msg overlapSelect
cd tests && make clean
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/overlapSelect/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/overlapSelect/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/overlapSelect'
(cd pslMap && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslMap'
rm -f pslMap pslMap.o usage.msg
(cd tests && make clean)
make[4]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslMap/tests'
rm -rf output
make[4]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslMap/tests'
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslMap'
(cd pslUniq && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslUniq'
rm -f pslUniq.o pslUniq
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/pslUniq'
(cd makeTrackIndex && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/makeTrackIndex'
rm -f makeTrackIndex.o
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils/makeTrackIndex'
find . -name '*.o' -exec rm {} \;
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/utils'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/uniqSize'
rm -f uniqSize uniqSize.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/uniqSize'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/updateStsInfo'
rm -f updateStsInfo updateStsInfo.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/updateStsInfo'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/visiGene/knownToVisiGene'
rm -f knownToVisiGene.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/visiGene/knownToVisiGene'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/xmlCat'
rm -f xmlCat.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/xmlCat'
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/xmlToSql'
rm -f xmlToSql.o elStat.o rename.o tables.o
rm -rf test/*/out
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg/xmlToSql'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/hg'
cd jkOwnLib && make clean
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/jkOwnLib'
rm -f bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o  ../lib/x86_64/jkOwnLib.a
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/jkOwnLib'
cd utils && make clean
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils'
aNotB
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/aNotB'
rm -f aNotB.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/aNotB'
addCols
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/addCols'
rm -f addCols.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/addCols'
ave
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/ave'
rm -f ave.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/ave'
aveCols
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/aveCols'
rm -f aveCols.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/aveCols'
bedClip
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedClip'
rm -f bedClip bedClip.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedClip'
bedCommonRegions
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedCommonRegions'
rm -f bedCommonRegions bedCommonRegions.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedCommonRegions'
bedGeneParts
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedGeneParts'
rm -f bedGeneParts bedGeneParts.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedGeneParts'
bedGraphToBigWig
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedGraphToBigWig'
rm -f bedGraphToBigWig.o bedGraphToBigWig
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedGraphToBigWig'
bedRemoveOverlap
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedRemoveOverlap'
rm -f bedRemoveOverlap bedRemoveOverlap.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedRemoveOverlap'
bedRestrictToPositions
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedRestrictToPositions'
rm -f bedRestrictToPositions bedRestrictToPositions.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedRestrictToPositions'
bedToBigBed
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedToBigBed'
rm -f bedToBigBed.o bedToBigBed
rm -fr tests/output
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bedToBigBed'
bigBedInfo
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedInfo'
rm -f bigBedInfo.o bigBedInfo
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedInfo'
bigBedSummary
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedSummary'
rm -f bigBedSummary.o bigBedSummary
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedSummary'
bigBedToBed
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedToBed'
rm -f bigBedToBed.o bigBedToBed
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigBedToBed'
bigWigAverageOverBed
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigAverageOverBed'
rm -f bigWigAverageOverBed bigWigAverageOverBed.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigAverageOverBed'
bigWigInfo
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigInfo'
rm -f bigWigInfo.o bigWigInfo
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigInfo'
bigWigMerge
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigMerge'
rm -f bigWigMerge bigWigMerge.o
rm -rf test/output
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigMerge'
bigWigSummary
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigSummary'
rm -f bigWigSummary.o bigWigSummary
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigSummary'
bigWigToBedGraph
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigToBedGraph'
rm -f bigWigToBedGraph.o bigWigToBedGraph
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigToBedGraph'
bigWigToWig
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigToWig'
rm -f bigWigToWig bigWigToWig.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/bigWigToWig'
calc
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/calc'
rm -f calc.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/calc'
catDir
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/catDir'
rm -f catDir.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/catDir'
catUncomment
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/catUncomment'
rm -f catUncomment.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/catUncomment'
ccCp
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/ccCp'
rm -f ccCp.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/ccCp'
chopFaLines
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/chopFaLines'
rm -f chopFaLines.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/chopFaLines'
colTransform
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/colTransform'
rm -f colTransform colTransform.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/colTransform'
countChars
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/countChars'
rm -f countChars.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/countChars'
convolve
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/convolve'
rm -f convolve.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/convolve'
detab
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/detab'
rm -f detab.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/detab'
endsInLf
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/endsInLf'
rm -f endsInLf.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/endsInLf'
fastqToFa
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/fastqToFa'
rm -f fastqToFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/fastqToFa'
faAlign
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faAlign'
rm -f faAlign.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faAlign'
faCmp
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faCmp'
rm -f faCmp.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faCmp'
faCount
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faCount'
rm -f faCount faCount.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faCount'
faFilterN
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilterN'
rm -f faFilterN.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilterN'
faFilter
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilter'
(cd tests && make clean)
make[3]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilter/tests'
rm -rf output
make[3]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilter/tests'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFilter'
faFlyBaseToUcsc
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFlyBaseToUcsc'
rm -f faFlyBaseToUcsc.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFlyBaseToUcsc'
faFrag
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFrag'
rm -f faFrag.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faFrag'
faGapLocs
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faGapLocs'
rm -f faGapLocs.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faGapLocs'
faGapSizes
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faGapSizes'
rm -f faGapSizes.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faGapSizes'
faNcbiToUcsc
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faNcbiToUcsc'
rm -f faNcbiToUcsc.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faNcbiToUcsc'
faNoise
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faNoise'
rm -f faNoise.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faNoise'
faOneRecord
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faOneRecord'
rm -f faOneRecord.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faOneRecord'
faPolyASizes
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faPolyASizes'
rm -f faPolyASizes.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faPolyASizes'
faRc
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faRc'
rm -f faRc.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faRc'
faSimplify
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSimplify'
rm -f faSimplify.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSimplify'
faSize
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSize'
rm -f faSize.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSize'
faSomeRecords
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSomeRecords'
rm -f faSomeRecords.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSomeRecords'
faSplit
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSplit'
rm -f faSplit.o  faSplit
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faSplit'
faToFastq
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToFastq'
rm -f faToFastq.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToFastq'
faToNib
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToNib'
rm -f faToNib.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToNib'
faToTab
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToTab'
rm -f faToTab.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToTab'
faToTwoBit
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToTwoBit'
rm -f faToTwoBit.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faToTwoBit'
faTrans
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrans'
rm -f faTrans.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrans'
faTrimPolyA
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrimPolyA'
rm -f faTrimPolyA.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrimPolyA'
faTrimRead
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrimRead'
rm -f faTrimRead.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/faTrimRead'
findMotif
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/findMotif'
rm -f findMotif.o findMotif
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/findMotif'
fixCr
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/fixCr'
rm -f fixCr.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/fixCr'
gapSplit
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gapSplit'
rm -f gapSplit.o gapSplit
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gapSplit'
gffPeek
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gffPeek'
rm -f gffPeek.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gffPeek'
git-reports
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/git-reports'
rm -f git-reports.o *.tmp
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/git-reports'
gitTools
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gitTools'
nothing to clean in src/utils/gitTools/
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/gitTools'
headRest
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/headRest'
rm -f headRest.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/headRest'
htmlPics
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/htmlPics'
rm -f htmlPics.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/htmlPics'
htmlCheck
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/htmlCheck'
rm -f htmlCheck.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/htmlCheck'
jkUniq
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/jkUniq'
rm -f jkUniq.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/jkUniq'
lineCount
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/lineCount'
rm -f lineCount.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/lineCount'
newProg
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/newProg'
rm -f newProg.o  newProg
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/newProg'
nibFrag
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nibFrag'
rm -f nibFrag.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nibFrag'
nibSize
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nibSize'
rm -f nibSize.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nibSize'
nt4Frag
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nt4Frag'
rm -f nt4Frag.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/nt4Frag'
paraFetch
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/paraFetch'
rm -f paraFetch.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/paraFetch'
pslLiftSubrangeBlat
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslLiftSubrangeBlat'
rm -f pslLiftSubrangeBlat pslLiftSubrangeBlat.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslLiftSubrangeBlat'
pslToPslx
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslToPslx'
rm -f pslToPslx.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslToPslx'
pslToXa
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslToXa'
rm -f pslToXa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/pslToXa'
randomLines
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/randomLines'
rm -f randomLines.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/randomLines'
raSqlQuery
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raSqlQuery'
rm -f raSqlQuery raSqlQuery.o raRecord.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raSqlQuery'
raToTab
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raToTab'
rm -f raToTab.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raToTab'
raToLines
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raToLines'
rm -f raToLines.o linesToRa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/raToLines'
rmFaDups
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/rmFaDups'
rm -f rmFaDups.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/rmFaDups'
rowsToCols
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/rowsToCols'
rm -f rowsToCols.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/rowsToCols'
scaffoldFaToAgp
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/scaffoldFaToAgp'
rm -f scaffoldFaToAgp.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/scaffoldFaToAgp'
scrambleFa
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/scrambleFa'
rm -f scrambleFa.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/scrambleFa'
sizeof
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/sizeof'
rm -f sizeof.o sizeof
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/sizeof'
spacedToTab
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/spacedToTab'
rm -f spacedToTab.o out.tab out2.tab
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/spacedToTab'
splitFile
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/splitFile'
rm -f splitFile.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/splitFile'
splitFileByColumn
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/splitFileByColumn'
rm -f splitFileByColumn.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/splitFileByColumn'
stringify
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/stringify'
rm -f stringify.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/stringify'
subChar
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subChar'
rm -f subChar.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subChar'
subColumn
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subColumn'
rm -f subColumn.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subColumn'
subs
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subs'
rm -f subs.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/subs'
tableSum
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tableSum'
rm -f tableSum.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tableSum'
tailLines
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tailLines'
rm -f tailLines.o  tailLines
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tailLines'
textHist2
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/textHist2'
rm -f textHist2.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/textHist2'
textHistogram
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/textHistogram'
rm -f textHistogram.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/textHistogram'
tickToDate
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tickToDate'
rm -f tickToDate.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/tickToDate'
timing
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/timing'
rm -f gmtime.o localtime.o mktime.o gmtime localtime mktime
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/timing'
toLower
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/toLower'
rm -f toLower.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/toLower'
toUpper
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/toUpper'
rm -f toUpper.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/toUpper'
twoBitInfo
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/twoBitInfo'
rm -f twoBitInfo.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/twoBitInfo'
twoBitToFa
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/twoBitToFa'
rm -f twoBitToFa.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/twoBitToFa'
udcCleanup
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/udcCleanup'
rm -f udcCleanup.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/udcCleanup'
undupFa
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/undupFa'
rm -f undupFa.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/undupFa'
upper
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/upper'
rm -f upper.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/upper'
venn
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/venn'
rm -f venn.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/venn'
weedLines
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/weedLines'
rm -f weedLines.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/weedLines'
wigCorrelate
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigCorrelate'
rm -f wigCorrelate wigCorrelate.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigCorrelate'
wigToBigWig
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigToBigWig'
rm -f wigToBigWig.o wigToBigWig
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigToBigWig'
wigTestMaker
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigTestMaker'
rm -f wigTestMaker.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wigTestMaker'
wordLine
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wordLine'
rm -f wordLine.o 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils/wordLine'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/utils'
cd webBlat && make clean
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/webBlat'
rm -f webBlat.o webBlat
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/webBlat'
cd isPcr && make clean
make[1]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr'
cd gfPcr && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/gfPcr'
rm -f gfPcr.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/gfPcr'
cd isPcr && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/isPcr'
rm -f isPcr.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/isPcr'
cd webPcr && make clean
make[2]: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/webPcr'
rm -f webPcr.o webPcr
make[2]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr/webPcr'
make[1]: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/isPcr'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
rm -f tags TAGS
make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src'
make -j1 -C src/lib 
make: Entering directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o aliType.o -c aliType.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o apacheLog.o -c apacheLog.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o asParse.o -c asParse.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o axt.o -c axt.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o axtAffine.o -c axtAffine.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bamFile.o -c bamFile.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o base64.o -c base64.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o basicBed.o -c basicBed.c
basicBed.c: In function ‘lmCloneBed’:
basicBed.c:781:44: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
 strncpy(newBed->strand, bed->strand, sizeof(bed->strand));
                                            ^
basicBed.c: In function ‘cloneBed’:
basicBed.c:817:44: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
 strncpy(newBed->strand, bed->strand, sizeof(bed->strand));
                                            ^
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bbiRead.o -c bbiRead.c
bbiRead.c: In function ‘bbiSummaryArrayFromFull’:
bbiRead.c:550:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 if (intervalList != NULL);
 ^~
bbiRead.c:551:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
     {
     ^
bbiRead.c: In function ‘bbiTotalSummary’:
bbiRead.c:703:34: warning: variable ‘chromEnd’ set but not used [-Wunused-but-set-variable]
      bits32 chromId, chromStart, chromEnd;
                                  ^~~~~~~~
bbiRead.c:703:22: warning: variable ‘chromStart’ set but not used [-Wunused-but-set-variable]
      bits32 chromId, chromStart, chromEnd;
                      ^~~~~~~~~~
bbiRead.c:703:13: warning: variable ‘chromId’ set but not used [-Wunused-but-set-variable]
      bits32 chromId, chromStart, chromEnd;
             ^~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bbiWrite.o -c bbiWrite.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bigBed.o -c bigBed.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o binRange.o -c binRange.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bits.o -c bits.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o blastOut.o -c blastOut.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o blastParse.o -c blastParse.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o boxClump.o -c boxClump.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o boxLump.o -c boxLump.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bPlusTree.o -c bPlusTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bwgCreate.o -c bwgCreate.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bwgQuery.o -c bwgQuery.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o bwgValsOnChrom.o -c bwgValsOnChrom.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o cda.o -c cda.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o chain.o -c chain.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o chainBlock.o -c chainBlock.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o chainConnect.o -c chainConnect.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o chainToAxt.o -c chainToAxt.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o chainToPsl.o -c chainToPsl.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o cheapcgi.o -c cheapcgi.c
cheapcgi.c: In function ‘cgiParseMultipart’:
cheapcgi.c:358:75: warning: variable ‘ct’ set but not used [-Wunused-but-set-variable]
 har *cd = NULL, *cdMain = NULL, *cdName = NULL, *cdFileName = NULL, *ct = NULL;
                                                                      ^~

x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o cirTree.o -c cirTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o codebias.o -c codebias.c
codebias.c: In function ‘codonFindFrame’:
codebias.c:104:8: warning: variable ‘logProbs’ set but not used [-Wunused-but-set-variable]
 double logProbs[3];
        ^~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o colHash.o -c colHash.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o common.o -c common.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o correlate.o -c correlate.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o crTree.o -c crTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dgRange.o -c dgRange.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o diGraph.o -c diGraph.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dlist.o -c dlist.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dnaLoad.o -c dnaLoad.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dnaMarkov.o -c dnaMarkov.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dnaMotif.o -c dnaMotif.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dnaseq.o -c dnaseq.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dnautil.o -c dnautil.c
dnautil.c: In function ‘findHeadPolyTMaybeMask’:
dnautil.c:942:5: warning: variable ‘pastPoly’ set but not used [-Wunused-but-set-variable]
 int pastPoly = 0;
     ^~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dtdParse.o -c dtdParse.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o dystring.o -c dystring.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o emblParse.o -c emblParse.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o errCatch.o -c errCatch.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o errabort.o -c errabort.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o fa.o -c fa.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o ffAli.o -c ffAli.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o ffScore.o -c ffScore.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o filePath.o -c filePath.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o fixColor.o -c fixColor.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o flydna.o -c flydna.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o fof.o -c fof.c
fof.c: In function ‘fofMake’:
fof.c:480:16: warning: variable ‘itemSize’ set but not used [-Wunused-but-set-variable]
 int i, fileIx, itemSize;
                ^~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier10.o -c font/mgCourier10.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier12.o -c font/mgCourier12.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier14.o -c font/mgCourier14.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier18.o -c font/mgCourier18.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier24.o -c font/mgCourier24.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier34.o -c font/mgCourier34.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgCourier8.o -c font/mgCourier8.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica10.o -c font/mgHelvetica10.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica12.o -c font/mgHelvetica12.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica14.o -c font/mgHelvetica14.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica18.o -c font/mgHelvetica18.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica24.o -c font/mgHelvetica24.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica34.o -c font/mgHelvetica34.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelvetica8.o -c font/mgHelvetica8.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold10.o -c font/mgHelveticaBold10.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold12.o -c font/mgHelveticaBold12.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold14.o -c font/mgHelveticaBold14.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold18.o -c font/mgHelveticaBold18.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold24.o -c font/mgHelveticaBold24.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold34.o -c font/mgHelveticaBold34.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgHelveticaBold8.o -c font/mgHelveticaBold8.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgSixhi6.o -c font/mgSixhi6.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgSail8.o -c font/mgSail8.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes10.o -c font/mgTimes10.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes12.o -c font/mgTimes12.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes14.o -c font/mgTimes14.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes18.o -c font/mgTimes18.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes24.o -c font/mgTimes24.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes34.o -c font/mgTimes34.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgTimes8.o -c font/mgTimes8.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o font/mgMenlo12.o -c font/mgMenlo12.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o fuzzyShow.o -c fuzzyShow.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gapCalc.o -c gapCalc.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gdf.o -c gdf.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gemfont.o -c gemfont.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o genomeRangeTree.o -c genomeRangeTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gfNet.o -c gfNet.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gff.o -c gff.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gff3.o -c gff3.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gfxPoly.o -c gfxPoly.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o gifLabel.o -c gifLabel.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o hacTree.o -c hacTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o hash.o -c hash.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o histogram.o -c histogram.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o hmmPfamParse.o -c hmmPfamParse.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o hmmstats.o -c hmmstats.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o htmlPage.o -c htmlPage.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o htmshell.o -c htmshell.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o https.o -c https.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o intExp.o -c intExp.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o intValTree.o -c intValTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o internet.o -c internet.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o itsa.o -c itsa.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o jointalign.o -c jointalign.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o jpegSize.o -c jpegSize.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o keys.o -c keys.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o knetUdc.o -c knetUdc.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o kxTok.o -c kxTok.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o linefile.o -c linefile.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o localmem.o -c localmem.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o log.o -c log.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o maf.o -c maf.c
maf.c: In function ‘mafFlipStrand’:
maf.c:739:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
     if (mc->text != NULL)
     ^~
maf.c:741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  if (mc->quality != NULL)
  ^~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o mafFromAxt.o -c mafFromAxt.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o mafScore.o -c mafScore.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o md5.o -c md5.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o memalloc.o -c memalloc.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o memgfx.o -c memgfx.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o metaWig.o -c metaWig.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o mgCircle.o -c mgCircle.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o mgPolygon.o -c mgPolygon.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o mime.o -c mime.c
mime.c: In function ‘parseMultiParts’:
mime.c:600:13: warning: variable ‘toobig’ set but not used [-Wunused-but-set-variable]
     boolean toobig=FALSE;
             ^~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o net.o -c net.c
net.c: In function ‘netConnectWithTimeout’:
net.c:88:31: warning: passing argument 3 to restrict-qualified parameter aliases with argument 4 [-Wrestrict]
      res = select(sd+1, NULL, &mySet, &mySet, &lTime);
                               ^~~~~~  ~~~~~~
net.c: In function ‘netSkipHttpHeaderLinesWithRedirect’:
net.c:1329:8: warning: variable ‘version’ set but not used [-Wunused-but-set-variable]
  char *version, *code;
        ^~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o nib.o -c nib.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o nibTwo.o -c nibTwo.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o nt4.o -c nt4.c
nt4.c: In function ‘newNt4’:
nt4.c:35:6: warning: variable ‘unpacked’ set but not used [-Wunused-but-set-variable]
 DNA *unpacked;
      ^~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o numObscure.o -c numObscure.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o obscure.o -c obscure.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o oldGff.o -c oldGff.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o oligoTm.o -c oligoTm.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o options.o -c options.c
options.c: In function ‘validateOption’:
options.c:52:11: warning: variable ‘discardMe’ set but not used [-Wunused-but-set-variable]
 long long discardMe = 0;
           ^~~~~~~~~
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o osunix.o -c osunix.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o pairHmm.o -c pairHmm.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o peakCluster.o -c peakCluster.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o phyloTree.o -c phyloTree.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o pipeline.o -c pipeline.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o portimpl.o -c portimpl.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -O2 -pipe -march=native -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -DUSE_SSL -DCOLOR32   -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc   -o pngwrite.o -c pngwrite.c
pngwrite.c:7:10: fatal error: png.h: No such file or directory
 #include "png.h"   // MUST come before common.h, due to setjmp checking  in pngconf.h
          ^~~~~~~
compilation terminated.
make: *** [../inc/common.mk:219: pngwrite.o] Error 1
make: Leaving directory '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent/src/lib'
 * ERROR: sci-biology/ucsc-genome-browser-260::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/ucsc-genome-browser-260::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/ucsc-genome-browser-260::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:ucsc-genome-browser-260:20181002-083042.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent'
 * S: '/var/tmp/portage/sci-biology/ucsc-genome-browser-260/work/kent'