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Gentoo's Bugzilla – Attachment 547401 Details for
Bug 666633
sci-libs/plplot-5.12.0-r1 : CMake Error at cmake/.../octave.cmake:239 (file):
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sci-libs:plplot-5.12.0-r1:20180920-124830.log
sci-libs:plplot-5.12.0-r1:20180920-124830.log (text/plain), 15.13 KB, created by
Toralf Förster
on 2018-09-20 15:59:23 UTC
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Description:
sci-libs:plplot-5.12.0-r1:20180920-124830.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2018-09-20 15:59:23 UTC
Size:
15.13 KB
patch
obsolete
> * Package: sci-libs/plplot-5.12.0-r1 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 cxx dynamic elibc_glibc fortran kernel_linux octave python_targets_python2_7 userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking plplot-5.12.0.tar.gz to /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work >>>> Preparing source in /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0 ... > * Applying plplot-5.9.6-python.patch ... > [ ok ] > * Applying plplot-5.11.0-octave.patch ... > [ ok ] > * Applying plplot-5.12.0-multiarch.patch ... > [ ok ] > * Applying plplot-5.12.0-java-install-path.patch ... > [ ok ] > * Applying plplot-5.12.0-ocaml-remove-rpath.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build" >cmake -C /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_LIBDIR=/usr/lib64 -DBUILD_DOC=OFF -DBUILD_DOX_DOC=OFF -DCMAKE_SKIP_RPATH=ON -DPREBUILT_DOC=no -DHAVE_SHAPELIB=no -DWITH_FREETYPE=no -DPL_HAVE_PTHREAD=no -DPL_HAVE_QHULL=no -DPLPLOT_USE_QT5=no -DTEST_DYNDRIVERS=OFF -DBUILD_TEST=no -DENABLE_ada=OFF -DENABLE_d=OFF -DENABLE_ocaml=no -DENABLE_pyqt4=OFF -DENABLE_cxx=yes -DENABLE_DYNDRIVERS=yes -DENABLE_f95=yes -DENABLE_java=no -DENABLE_lua=no -DTRY_OCTAVE4=yes -DENABLE_octave=yes -DENABLE_pdl=no -DENABLE_python=no -DENABLE_qt=no -DENABLE_tcl=no -DENABLE_itcl=no -DENABLE_tk=no -DENABLE_itk=no -DENABLE_wxwidgets=no -DPLD_cgm=OFF -DPLD_gif=OFF -DPLD_jpeg=OFF -DPLD_plmeta=OFF -DPLD_png=OFF -DPLD_pstex=OFF -DPLD_wxpng=OFF -DPLD_mem=ON -DPLD_null=ON -DPLD_wingcc=ON -DDEFAULT_NO_CAIRO_DEVICES=ON -DPLD_epscairo=OFF -DPLD_extcairo=OFF -DPLD_memcairo=OFF -DPLD_pdfcairo=OFF -DPLD_pngcairo=OFF -DPLD_pscairo=OFF -DPLD_svgcairo=OFF -DPLD_xcairo=OFF -DPLD_ps=OFF -DPLD_pdf=OFF -DPLD_aqt=OFF -DPLD_bmpqt=OFF -DPLD_epsqt=OFF -DPLD_extqt=OFF -DPLD_jpgqt=OFF -DPLD_memqt=OFF -DPLD_pdfqt=OFF -DPLD_pngqt=OFF -DPLD_ppmqt=OFF -DPLD_qtwidget=OFF -DPLD_svgqt=OFF -DPLD_tiffqt=OFF -DPLD_svg=OFF -DPLD_ntk=OFF -DPLD_tk=OFF -DPLD_tkwin=OFF -DPLD_psttf=OFF -DPLD_wxwidgets=OFF -DPLD_xfig=OFF -DPLD_xwin=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0 >loading initial cache file /var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/gentoo_common_config.cmake >-- The C compiler identification is GNU 8.2.0 >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- CMake version = 3.12.2 >-- CMAKE_SYSTEM_NAME = Linux >-- SH_EXECUTABLE = /bin/bash >-- Checking whether system has ANSI C header files >-- Looking for 4 include files stdlib.h, ..., float.h >-- Looking for 4 include files stdlib.h, ..., float.h - found >-- Performing Test memchrExists >-- Performing Test memchrExists - Success >-- Performing Test freeExists >-- Performing Test freeExists - Success >-- Check for whether ctype.h macros work on characters with the > high bit set. >-- High-bit characters - work >-- ANSI C header files - found >-- Looking for include file unistd.h >-- Looking for include file unistd.h - found >-- Looking for include file termios.h >-- Looking for include file termios.h - found >-- Looking for include file stdint.h >-- Looking for include file stdint.h - found >-- Looking for crt_externs.h >-- Looking for crt_externs.h - not found >-- Performing Test HAVE_SYS_WAIT_H >-- Performing Test HAVE_SYS_WAIT_H - Success >-- Looking for DIR symbol in sys/types.h;dirent.h >-- Looking for DIR symbol in sys/types.h;dirent.h - found >-- Check for signal return type in <signal.h> >-- Check for signal handler return type type void - found >-- Looking for popen >-- Looking for popen - found >-- Looking for usleep >-- Looking for usleep - found >-- Looking for nanosleep >-- Looking for nanosleep - found >-- Looking for mkstemp >-- Looking for mkstemp - found >-- Looking for mkdtemp >-- Looking for mkdtemp - found >-- Looking for mkfifo >-- Looking for mkfifo - found >-- Looking for unlink >-- Looking for unlink - found >-- Looking for _NSGetArgc >-- Looking for _NSGetArgc - not found >-- Looking for isfinite >-- Looking for isfinite - found >-- Looking for finite >-- Looking for finite - found >-- Looking for isnan >-- Looking for isnan - found >-- Looking for isinf >-- Looking for isinf - found >-- Looking for snprintf >-- Looking for snprintf - found >-- SWIG_VERSION = 3.0.12 >-- Found Perl: /usr/bin/perl (found version "5.26.2") >-- The CXX compiler identification is GNU 8.2.0 >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Check for using namespace support >-- Check for using namespace - found >-- Looking for C++ include cmath >-- Looking for C++ include cmath - found >-- Check for broken isnan support in <cmath> >-- Check for isnan in <cmath> - found >-- Check for using stdint.h with CXX compiler >-- Check for using stdint.h with CXX compiler - ok >-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "1.5.1") >-- Looking for pkg-config - found >-- cxx_compiler_library_pathname_list = /usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/libstdc++.so;/usr/lib64/libm.so;/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/libgcc_s.so;/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/libgcc.a;/usr/lib64/libc.so;/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/libgcc_s.so;/usr/lib/gcc/x86_64-pc-linux-gnu/8.2.0/libgcc.a >-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so >-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found >-- Looking for gethostbyname >-- Looking for gethostbyname - found >-- Looking for connect >-- Looking for connect - found >-- Looking for remove >-- Looking for remove - found >-- Looking for shmat >-- Looking for shmat - found >-- Looking for IceConnectionNumber in ICE >-- Looking for IceConnectionNumber in ICE - found >-- Found X11: /usr/lib/libX11.so >-- X11_FOUND = 1 >-- X11_INCLUDE_DIR = /usr/include >-- X11_COMPILE_FLAGS = -I/usr/include >-- X11_LIBRARIES = /usr/lib/libSM.so;/usr/lib/libICE.so;/usr/lib/libX11.so;/usr/lib/libXext.so >-- The Fortran compiler identification is GNU 8.2.0 >-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran >-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- works >-- Detecting Fortran compiler ABI info >-- Detecting Fortran compiler ABI info - done >-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 >-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes >-- Check if isnan function is available in fortran >-- Check for isnan in fortran - not found >-- NOTICE: Found: /usr/bin/x86_64-pc-linux-gnu-gfortran >-- OCTAVE = /usr/bin/octave >-- MKOCTFILE = /usr/bin/mkoctfile >-- OCTAVE_CONFIG = /usr/bin/octave-config >-- OCTAVE_VERSION = 4.4.0 >-- WARNING: Octave-4 has been found which is likely to lead to build errors for PLplot. >-- WARNING: TRY_OCTAVE4 = yes so experimentally trying Octave-4 >-- OCTAVE_LIBRARIES = /usr/lib64/octave/4.4.0/liboctave.so >-- OCTINTERP_LIBRARIES = /usr/lib64/octave/4.4.0/liboctinterp.so >-- OCTAVE_INCLUDE_PATH = /usr/include;/usr/include/octave-4.4.0;/usr/include/octave-4.4.0/octave >-- PLPLOT_OCTAVE_DIR = /usr/share/plplot_octave >warning: octave_config_info is obsolete and will be removed from a future version of Octave, please use __have_feature__ or __octave_config_info__ instead. >warning: called from > octave_config_info at line 43 column 5 > octave_command at line 1 column 1 >error: __octave_config_info__: no info for 'prefix' >error: called from > octave_config_info at line 85 column 12 > octave_command at line 1 column 1 >CMake Error at cmake/modules/octave.cmake:239 (file): > file FILE([TO_CMAKE_PATH|TO_NATIVE_PATH] path result) must be called with > exactly three arguments. >Call Stack (most recent call first): > cmake/modules/plplot.cmake:484 (include) > CMakeLists.txt:135 (include) > > >warning: octave_config_info is obsolete and will be removed from a future version of Octave, please use __have_feature__ or __octave_config_info__ instead. >warning: called from > octave_config_info at line 43 column 5 > octave_command at line 1 column 1 >warning: octave_config_info is obsolete and will be removed from a future version of Octave, please use __have_feature__ or __octave_config_info__ instead. >warning: called from > octave_config_info at line 43 column 5 > octave_command at line 1 column 1 >-- OCTAVE_M_DIR = /usr/share/octave/site/m >-- OCTAVE_OCT_DIR = /usr/lib64/octave >-- WARNING: ENABLE_tcl is OFF so disabling everything else that is Tcl/Tk related >-- Check for NaN awareness in C compiler >-- Check for NaN awareness in C compiler - found >-- Checking for module 'pango' >-- Found pango, version 1.42.4 >-- Checking for module 'pangoft2' >-- Found pangoft2, version 1.42.4 >-- Found LTDL: /usr/lib/libltdl.so >-- LTDL_INCLUDE_DIR = /usr/include >-- LTDL_LIBRARY_DIR = /usr/lib >-- LTDL_LIBRARIES = /usr/lib/libltdl.so >-- WARNING: PLPLOT_USE_QT5 is OFF so setting ENABLE_pyqt5 to OFF. >-- WARNING: ENABLE_wxwidgets is OFF so setting all wxwidgets devices to OFF. >-- WARNING: ENABLE_ocaml is OFF so disabling Plcairo module and lablgtk2 support >-- validate target will be available to check for syntax issues in the PLplot DocBook documentation using /usr/bin/env SP_CHARSET_FIXED=yes SP_ENCODING=xml /usr/bin/onsgmls. >pc_libplplot_LINK_FLAGS = /usr/lib/libltdl.so;/usr/lib/libm.so;-lcsirocsa;-lqsastime >-- WARNING concerning spurious warning messages generated by the gfortran compiler. > The new Fortran binding is known to generate some ~50 "marked > PRIVATE" warning messages when building the plplotf95 target with the > gfortran Fortran compiler. A typical example of such a warning > message is > > Warning: Symbol 'interface_plcont' at (1) is marked PRIVATE but has been given the binding label 'c_plcont' > > It appears these warnings (which do not occur if using the ifort or > nagfor Fortran compilers) are due to a gfortran bug (see > <https://gcc.gnu.org/bugzilla/show_bug.cgi?id=49111> and > <https://gcc.gnu.org/bugzilla/show_bug.cgi?id=64861>), i.e., they > are spurious warnings concerning completely valid use of the > private attribute for interface blocks describing C routines. > There appear to be no known negative consequences of this gfortran > bug other than the spurious warnings themselves. Until this gfortran > bug is fixed, these ~50 "marked PRIVATE" warnings should just be > ignored for those using gfortran. >-- TEST_ENVIRONMENT = EXAMPLES_DIR=/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/examples SRC_EXAMPLES_DIR=/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0/examples OUTPUT_DIR=/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/ctest_examples_output_dir VC_CTEST_DIRECTORY= > >Summary of CMake build system results for PLplot > >Install location variables which can be set by the user: >CMAKE_INSTALL_PREFIX: /usr >CMAKE_INSTALL_EXEC_PREFIX /usr >CMAKE_INSTALL_BINDIR /usr/bin >CMAKE_INSTALL_DATADIR /usr/share >CMAKE_INSTALL_LIBDIR /usr/lib64 >CMAKE_INSTALL_INCLUDEDIR /usr/include >CMAKE_INSTALL_INFODIR /usr/share/info >CMAKE_INSTALL_MANDIR /usr/share/man > >Derived install location variables: >DATA_DIR /usr/share/plplot5.12.0 >LIB_DIR /usr/lib64 >INCLUDE_DIR /usr/include/plplot >BIN_DIR /usr/bin >TCL_DIR /usr/share/plplot5.12.0/tcl >ADA_INCLUDE_DIR /usr/share/ada/adainclude/plplotada >ADA_LIB_DIR /usr/lib64/ada/adalib/plplotada >PYTHON_INSTDIR >DRV_DIR /usr/lib64/plplot5.12.0/drivers >DOC_DIR /usr/share/doc/plplot-5.12.0-r1 >MAN_DIR /usr/share/man >INFO_DIR /usr/share/info > >Other important CMake variables: > >CMAKE_SYSTEM_NAME: Linux >UNIX: 1 >WIN32: >APPLE: >MSVC: (MSVC_VERSION: ) >MINGW: >MSYS: >CYGWIN: >BORLAND: >WATCOM: > >SWIG_FOUND: 1 >PERL_FOUND: TRUE >X11_FOUND: 1 > >CMAKE_BUILD_TYPE: Gentoo >CMAKE_C_COMPILER CMAKE_C_FLAGS: /usr/bin/x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native >CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS: /usr/bin/x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -std=c++11 >CMAKE_Fortran_COMPILER CMAKE_Fortran_FLAGS: /usr/bin/x86_64-pc-linux-gnu-gfortran -O2 -pipe >Target Fortran: > >ENABLE_DYNDRIVERS: yes >DRIVERS_LIST: mem;null >DEVICES_LIST: mem;null > >Library options: >BUILD_SHARED_LIBS: ON PL_DOUBLE: ON > >Optional libraries: >PL_HAVE_QHULL: no WITH_CSA: ON >PL_HAVE_FREETYPE: PL_HAVE_PTHREAD: no >HAVE_AGG: HAVE_SHAPELIB: no > >Language Bindings: >ENABLE_ada: OFF >ENABLE_cxx: yes >ENABLE_d: OFF >ENABLE_f95: yes >ENABLE_java: no >ENABLE_lua: no >ENABLE_ocaml: no >ENABLE_octave: yes >ENABLE_pdl: no >ENABLE_python: no >ENABLE_qt: no >ENABLE_pyqt4: OFF >ENABLE_pyqt5: OFF >ENABLE_tcl: no >ENABLE_itcl: OFF >ENABLE_tk: OFF >ENABLE_itk: OFF >ENABLE_wxwidgets: no > >-- <<< Gentoo configuration >>> >Build type Gentoo >Install path /usr >Compiler flags: >C -O2 -pipe -march=native >C++ -O2 -pipe -march=native -std=c++11 >Linker flags: >Executable -Wl,-O1 -Wl,--as-needed >Module -Wl,-O1 -Wl,--as-needed >Shared -Wl,-O1 -Wl,--as-needed > >-- Configuring incomplete, errors occurred! >See also "/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/CMakeFiles/CMakeOutput.log". >See also "/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build/CMakeFiles/CMakeError.log". > * ERROR: sci-libs/plplot-5.12.0-r1::gentoo failed (configure phase): > * cmake failed > * > * Call stack: > * ebuild.sh, line 124: Called src_configure > * environment, line 5847: Called cmake-utils_src_configure > * environment, line 1319: Called die > * The specific snippet of code: > * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > * > * If you need support, post the output of `emerge --info '=sci-libs/plplot-5.12.0-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/plplot-5.12.0-r1::gentoo'`. >!!! When you file a bug report, please include the following information: >GENTOO_VM= CLASSPATH="" JAVA_HOME="" >JAVACFLAGS="" COMPILER="" >and of course, the output of emerge --info =plplot-5.12.0 > * The complete build log is located at '/var/log/portage/sci-libs:plplot-5.12.0-r1:20180920-124830.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/plplot-5.12.0-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/plplot-5.12.0-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0_build' > * S: '/var/tmp/portage/sci-libs/plplot-5.12.0-r1/work/plplot-5.12.0'
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