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Gentoo's Bugzilla – Attachment 545940 Details for
Bug 664890
dev-python/pandas-0.23.4 - ImportError: libgfortran.so.4: cannot open shared object file
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build.log for sage
build.log (text/x-log), 10.29 KB, created by
Juergen Rose
on 2018-09-04 21:47:03 UTC
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hide
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Description:
build.log for sage
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2018-09-04 21:47:03 UTC
Size:
10.29 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-mathematics/sage-8.3-r1 >[32;01m * [39;49;00mRepository: sage-on-gentoo >[32;01m * [39;49;00mMaintainer: frp.bissey@gmail.com >[32;01m * [39;49;00mUSE: X abi_x86_64 amd64 doc-html-bin elibc_glibc kernel_linux l10n_de l10n_en l10n_fr l10n_ru latex python_targets_python2_7 python_targets_python3_6 sagenb userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking sage-8.3.tar.gz to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work >>>> Unpacking sage-icon.tar.bz2 to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work >>>> Unpacking threejs-r80.tar.gz to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work >>>> Unpacking sage-8.3-doc-html.tar.xz to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work >>>> Source unpacked in /var/tmp/portage/sci-mathematics/sage-8.3-r1/work >>>> Preparing source in /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src ... > [32;01m*[0m Will copy sources from /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src > [32;01m*[0m python2_7: copying to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src-python2_7 > [32;01m*[0m python3_6: copying to /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src-python3_6 > [32;01m*[0m python2_7: running distutils-r1_run_phase python_prepare > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m sage-env ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.1-sage-cython.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-exec.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m sage ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-eclib-c++11.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying dt-r-no-readline.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-neutering.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-gmpy2_option.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-tachyon_default.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-sources.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.1-env.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m env.py ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-maxima.lisp.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-threejs.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-libgap.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-jupyter.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-6.8-lazy_import_cache.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-doctest_memory.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.2-all.py.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.3-safepython.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-SAGE_ROOT.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.1-sagedoc.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-pdfbuild.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.1-linguas.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-mathjax_path.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m python3_6: running distutils-r1_run_phase python_prepare > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m sage-env ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.1-sage-cython.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-exec.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m sage ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-eclib-c++11.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying dt-r-no-readline.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-neutering.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-gmpy2_option.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-tachyon_default.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-sources.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.1-env.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Adjusting to prefix / > [32;01m*[0m env.py ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-maxima.lisp.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-threejs.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-libgap.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-jupyter.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-6.8-lazy_import_cache.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-doctest_memory.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.2-all.py.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.3-safepython.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-SAGE_ROOT.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.1-sagedoc.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.3-pdfbuild.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-7.1-linguas.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying sage-8.2-mathjax_path.patch ... >[A[170C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src ... > [32;01m*[0m python2_7: running distutils-r1_run_phase python_configure > [32;01m*[0m python3_6: running distutils-r1_run_phase python_configure > [32;01m*[0m python3_6: running distutils-r1_run_phase python_configure_all >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src ... > [32;01m*[0m python2_7: running distutils-r1_run_phase python_compile >python2.7 setup.py build >************************************************************************ >Traceback (most recent call last): > File "setup.py", line 87, in <module> > include_dirs = sage_include_directories(use_sources=True) > File "/var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src-python2_7/sage/env.py", line 242, in sage_include_directories > import os, numpy > File "/usr/lib64/python2.7/site-packages/numpy/__init__.py", line 142, in <module> > from . import add_newdocs > File "/usr/lib64/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module> > from numpy.lib import add_newdoc > File "/usr/lib64/python2.7/site-packages/numpy/lib/__init__.py", line 19, in <module> > from .polynomial import * > File "/usr/lib64/python2.7/site-packages/numpy/lib/polynomial.py", line 20, in <module> > from numpy.linalg import eigvals, lstsq, inv > File "/usr/lib64/python2.7/site-packages/numpy/linalg/__init__.py", line 51, in <module> > from .linalg import * > File "/usr/lib64/python2.7/site-packages/numpy/linalg/linalg.py", line 31, in <module> > from numpy.linalg import lapack_lite, _umath_linalg >ImportError: libgfortran.so.4: cannot open shared object file: No such file or directory >************************************************************************ >Error building the Sage library >************************************************************************ > [31;01m*[0m ERROR: sci-mathematics/sage-8.3-r1::sage-on-gentoo failed (compile phase): > [31;01m*[0m (no error message) > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 124: Called src_compile > [31;01m*[0m environment, line 4571: Called distutils-r1_src_compile > [31;01m*[0m environment, line 1357: Called _distutils-r1_run_foreach_impl 'python_compile' > [31;01m*[0m environment, line 645: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 3848: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2919: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2917: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 996: Called distutils-r1_run_phase 'python_compile' > [31;01m*[0m environment, line 1350: Called python_compile > [31;01m*[0m environment, line 3399: Called distutils-r1_python_compile > [31;01m*[0m environment, line 1225: Called esetup.py 'build' > [31;01m*[0m environment, line 1921: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${@}" || die "${die_args[@]}"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-mathematics/sage-8.3-r1::sage-on-gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-mathematics/sage-8.3-r1::sage-on-gentoo'`. > [31;01m*[0m The complete build log is located at '/var/log/portage/sci-mathematics:sage-8.3-r1:20180902-163052.log'. > [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/sage-8.3-r1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/sage-8.3-r1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src-python2_7' > [31;01m*[0m S: '/var/tmp/portage/sci-mathematics/sage-8.3-r1/work/sage-8.3/src'
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