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Gentoo's Bugzilla – Attachment 544850 Details for
Bug 664506
sci-chemistry/openbabel-python-2.4.1-r1 : CMake Error at cmake/.../MacroEnsureVersion.cmake:76 (MATH):
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CMakeError.log
CMakeError.log (text/plain), 10.56 KB, created by
Toralf Förster
on 2018-08-24 17:53:45 UTC
(
hide
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Description:
CMakeError.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2018-08-24 17:53:45 UTC
Size:
10.56 KB
patch
obsolete
>Determining if the include file conio.h exists failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_f7d6e/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_f7d6e.dir/build.make CMakeFiles/cmTC_f7d6e.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_f7d6e.dir/CheckIncludeFile.c.o >/usr/bin/x86_64-pc-linux-gnu-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_f7d6e.dir/CheckIncludeFile.c.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckIncludeFile.c >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: conio.h: No such file or directory > #include <conio.h> > ^~~~~~~~~ >compilation terminated. >gmake[1]: *** [CMakeFiles/cmTC_f7d6e.dir/build.make:66: CMakeFiles/cmTC_f7d6e.dir/CheckIncludeFile.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_f7d6e/fast] Error 2 > > >Determining if the include file rpc/xdr.h exists failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_1fc8b/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_1fc8b.dir/build.make CMakeFiles/cmTC_1fc8b.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_1fc8b.dir/CheckIncludeFile.c.o >/usr/bin/x86_64-pc-linux-gnu-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_1fc8b.dir/CheckIncludeFile.c.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckIncludeFile.c >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckIncludeFile.c:1:10: fatal error: rpc/xdr.h: No such file or directory > #include <rpc/xdr.h> > ^~~~~~~~~~~ >compilation terminated. >gmake[1]: *** [CMakeFiles/cmTC_1fc8b.dir/build.make:66: CMakeFiles/cmTC_1fc8b.dir/CheckIncludeFile.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_1fc8b/fast] Error 2 > > >Determining if the rint exist failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_93f99/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_93f99.dir/build.make CMakeFiles/cmTC_93f99.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_93f99.dir/CheckSymbolExists.c.o >/usr/bin/x86_64-pc-linux-gnu-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_93f99.dir/CheckSymbolExists.c.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c >Linking C executable cmTC_93f99 >/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_93f99.dir/link.txt --verbose=1 >/usr/bin/x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -rdynamic CMakeFiles/cmTC_93f99.dir/CheckSymbolExists.c.o -o cmTC_93f99 >CMakeFiles/cmTC_93f99.dir/CheckSymbolExists.c.o: In function `main': >CheckSymbolExists.c:(.text.startup+0x3): undefined reference to `rint' >collect2: error: ld returned 1 exit status >gmake[1]: *** [CMakeFiles/cmTC_93f99.dir/build.make:87: cmTC_93f99] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_93f99/fast] Error 2 > >File /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c: >/* */ >#include <math.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef rint > return ((int*)(&rint))[argc]; >#else > (void)argc; > return 0; >#endif >} > >Determining if the sranddev exist failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_cdf5a/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_cdf5a.dir/build.make CMakeFiles/cmTC_cdf5a.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_cdf5a.dir/CheckSymbolExists.c.o >/usr/bin/x86_64-pc-linux-gnu-gcc -DNDEBUG -O2 -pipe -march=native -o CMakeFiles/cmTC_cdf5a.dir/CheckSymbolExists.c.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c: In function âmainâ: >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:19: error: âsranddevâ undeclared (first use in this function); did you mean âsrand48â? > return ((int*)(&sranddev))[argc]; > ^~~~~~~~ > srand48 >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c:8:19: note: each undeclared identifier is reported only once for each function it appears in >gmake[1]: *** [CMakeFiles/cmTC_cdf5a.dir/build.make:66: CMakeFiles/cmTC_cdf5a.dir/CheckSymbolExists.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_cdf5a/fast] Error 2 > >File /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/CheckSymbolExists.c: >/* */ >#include <stdlib.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sranddev > return ((int*)(&sranddev))[argc]; >#else > (void)argc; > return 0; >#endif >} > >Performing C SOURCE FILE Test SCANDIR_NEEDS_CONST failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_3858e/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_3858e.dir/build.make CMakeFiles/cmTC_3858e.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building C object CMakeFiles/cmTC_3858e.dir/src.c.o >/usr/bin/x86_64-pc-linux-gnu-gcc -DNDEBUG -O2 -pipe -march=native -DSCANDIR_NEEDS_CONST -Werror -o CMakeFiles/cmTC_3858e.dir/src.c.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.c >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.c: In function âmainâ: >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.c:7:46: error: passing argument 3 of âscandirâ from incompatible pointer type [-Werror=incompatible-pointer-types] > int count = scandir ("./", &entries_pp, matchFiles, 0); > ^~~~~~~~~~ >In file included from /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.c:3: >/usr/include/dirent.h:257:13: note: expected âint (*)(const struct dirent *)â but argument is of type âint (*)(struct dirent *)â > int (*__selector) (const struct dirent *), > ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >cc1: all warnings being treated as errors >gmake[1]: *** [CMakeFiles/cmTC_3858e.dir/build.make:66: CMakeFiles/cmTC_3858e.dir/src.c.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_3858e/fast] Error 2 > >Source file was: > > #include <sys/types.h> > #include <dirent.h> > int main(){ > extern int matchFiles (struct dirent *entry_p); > struct dirent **entries_pp; > int count = scandir ("./", &entries_pp, matchFiles, 0); > return count; > } > >Performing C++ SOURCE FILE Test HAVE_STD_TR1_SHARED_PTR failed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp > >Run Build Command:"/usr/bin/gmake" "cmTC_3fca6/fast" >/usr/bin/gmake -f CMakeFiles/cmTC_3fca6.dir/build.make CMakeFiles/cmTC_3fca6.dir/build >gmake[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >Building CXX object CMakeFiles/cmTC_3fca6.dir/src.cxx.o >/usr/bin/x86_64-pc-linux-gnu-g++ -DNDEBUG -O2 -pipe -march=native -pthread -DHAVE_STD_TR1_SHARED_PTR -Werror -o CMakeFiles/cmTC_3fca6.dir/src.cxx.o -c /var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.cxx >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.cxx: In function âint main()â: >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.cxx:2:45: error: âstd::tr1â has not been declared > int main(){ std::tr1::shared_ptr<int> p; return 0; } > ^~~ >/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp/src.cxx:2:61: error: expected primary-expression before âintâ > int main(){ std::tr1::shared_ptr<int> p; return 0; } > ^~~ >gmake[1]: *** [CMakeFiles/cmTC_3fca6.dir/build.make:66: CMakeFiles/cmTC_3fca6.dir/src.cxx.o] Error 1 >gmake[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-python-2.4.1-r1/work/openbabel-2.4.1-python2_7/CMakeFiles/CMakeTmp' >gmake: *** [Makefile:121: cmTC_3fca6/fast] Error 2 > >Source file was: >#include <memory> > int main(){ std::tr1::shared_ptr<int> p; return 0; }
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