* Package: dev-python/pytables-3.4.2 * Repository: gentoo * Maintainer: python@gentoo.org sci@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 python_targets_python3_6 userland_GNU * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox >>> Unpacking source... >>> Unpacking tables-3.4.2.tar.gz to /var/tmp/portage/dev-python/pytables-3.4.2/work >>> Source unpacked in /var/tmp/portage/dev-python/pytables-3.4.2/work >>> Preparing source in /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2 ... * python2_7: running distutils-r1_run_phase python_compile python2.7 setup.py build /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateZlkcDR.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int] main (int argc, char **argv) { ^~~~ /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateZlkcDR.c: In function ‘main’: /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateZlkcDR.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] lzo_version_date(); ^~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -llzo collect2: error: ld returned 1 exit status * Using Python 2.7.15 (default, Aug 10 2018, 01:46:58) * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``. * pkg-config header dirs for LZO 2: /usr/include/lzo * Could not find LZO 2 headers and library; disabling support for it. * Could not find LZO 1 headers and library; disabling support for it. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. .. WARNING:: Could not find the bzip2 runtime. The bzip2 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * pkg-config library dirs for blosc: /usr/lib * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. Compiling tables/utilsextension.pyx because it changed. [1/1] Cythonizing tables/utilsextension.pyx Compiling tables/hdf5extension.pyx because it changed. [1/1] Cythonizing tables/hdf5extension.pyx Compiling tables/tableextension.pyx because it changed. [1/1] Cythonizing tables/tableextension.pyx Compiling tables/linkextension.pyx because it changed. [1/1] Cythonizing tables/linkextension.pyx Compiling tables/_comp_lzo.pyx because it changed. [1/1] Cythonizing tables/_comp_lzo.pyx Compiling tables/_comp_bzip2.pyx because it changed. [1/1] Cythonizing tables/_comp_bzip2.pyx Compiling tables/lrucacheextension.pyx because it changed. [1/1] Cythonizing tables/lrucacheextension.pyx Compiling tables/indexesextension.pyx because it changed. [1/1] Cythonizing tables/indexesextension.pyx /usr/lib64/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) running build running build_py creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/vlarray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/utils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/unimplemented.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/undoredo.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/table.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/req_versions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/registry.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/path.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/parameters.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/node.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/link.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/leaf.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/index.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/idxutils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/group.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/flavor.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/filters.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/file.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/expression.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/exceptions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/earray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/description.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/conditions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/carray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/attributeset.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/atom.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/array.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables copying tables/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_vlarray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_utils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_types.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_tree.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_timetype.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_tablesMD.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_tables.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_queries.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_numpy.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_nestedtypes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_lists.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_links.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_indexvalues.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_index_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_hdf5compat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_garbage.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_expression.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_enum.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_earray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_do_undo.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_create.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_carray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_basics.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_aux.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_attributes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_array.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_all.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/create_backcompat_indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/common.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/check_leaks.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts copying tables/scripts/pttree.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts copying tables/scripts/ptrepack.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts copying tables/scripts/ptdump.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts copying tables/scripts/pt2to3.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts copying tables/scripts/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/scripts creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes copying tables/nodes/filenode.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes copying tables/nodes/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/misc copying tables/misc/proxydict.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/misc copying tables/misc/enum.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/misc copying tables/misc/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/misc creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests copying tables/nodes/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests copying tables/tests/zerodim-attrs-1.4.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/vlunicode_endian.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/vlstr_attr.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/times-nested-be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_szip.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_unsupptype.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_i64le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_i64be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_i32le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_i32be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_f64le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_f64be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_enum.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/slink.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/scalar.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/python3.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/python2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/oldflavor_numeric.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/non-chunked-table.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/nested-type-with-gaps.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/issue_560.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/issue_368.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/indexes_2_1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/indexes_2_0.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/idx-std-1.x.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/float.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/ex-noattr.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/elink2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/elink.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/bug-idx.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/blosc_bigendian.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/attr-u16.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/array_mdatom.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/Tables_lzo2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/Tables_lzo1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_ref_array2.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/test_ref_array1.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/tests/matlab_file.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests copying tables/nodes/tests/test_filenode.dat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/nodes/tests warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'tables.utilsextension' extension creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7 creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/utilsextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/utilsextension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/utilsextension.c:581: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/include/python2.7/Python.h:8:0, from src/utils.h:1, from src/H5ARRAY.c:4: /usr/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/H5public.h:35:0, from /usr/include/hdf5.h:22, from src/H5ATTR.h:19, from src/H5ARRAY.c:1: /usr/include/features.h:265:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/utilsextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/utilsextension.so building 'tables.hdf5extension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/hdf5extension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/hdf5extension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/hdf5extension.c:580: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/typeconv.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/typeconv.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/include/python2.7/Python.h:8:0, from src/utils.h:1, from src/H5ARRAY.c:4: /usr/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/H5public.h:35:0, from /usr/include/hdf5.h:22, from src/H5ATTR.h:19, from src/H5ARRAY.c:1: /usr/include/features.h:265:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ARRAY-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY-opt.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5VLARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5VLARRAY.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/include/python2.7/Python.h:8:0, from src/utils.h:1, from src/H5VLARRAY.c:3: /usr/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/H5public.h:35:0, from /usr/include/hdf5.h:22, from src/H5ATTR.h:19, from src/H5VLARRAY.c:1: /usr/include/features.h:265:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/hdf5extension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/typeconv.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5VLARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/hdf5extension.so building 'tables.tableextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/tableextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/tableextension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/tableextension.c:581: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/typeconv.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/typeconv.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5TB-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5TB-opt.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/tableextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/typeconv.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5TB-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tableextension.so building 'tables._comp_lzo' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/_comp_lzo.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/_comp_lzo.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5Zlzo.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5Zlzo.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/_comp_lzo.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5Zlzo.o -L/usr/lib64 -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/_comp_lzo.so building 'tables._comp_bzip2' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/_comp_bzip2.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/_comp_bzip2.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5Zbzip2.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5Zbzip2.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/_comp_bzip2.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5Zbzip2.o -L/usr/lib64 -lhdf5 -lbz2 -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/_comp_bzip2.so building 'tables.linkextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/linkextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/linkextension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/linkextension.c:580: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/linkextension.o -L/usr/lib64 -lhdf5 -lblosc -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/linkextension.so building 'tables.lrucacheextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/lrucacheextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/lrucacheextension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/lrucacheextension.c:580: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/lrucacheextension.o -L/usr/lib64 -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/lrucacheextension.so building 'tables.indexesextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/indexesextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/indexesextension.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/indexesextension.c:580: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ARRAY-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY-opt.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/idx-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/idx-opt.o -O2 -pipe -march=native -fno-strict-aliasing -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/include/python2.7/Python.h:8:0, from src/idx-opt.h:1, from src/idx-opt.c:2: /usr/include/python2.7/pyconfig.h:1223:0: warning: "_POSIX_C_SOURCE" redefined #define _POSIX_C_SOURCE 200112L In file included from /usr/include/bits/libc-header-start.h:33:0, from /usr/include/stdio.h:27, from src/idx-opt.c:1: /usr/include/features.h:265:0: note: this is the location of the previous definition # define _POSIX_C_SOURCE 200809L In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native -fno-strict-aliasing /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/tables/indexesextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/temp.linux-x86_64-2.7/src/idx-opt.o -L/usr/lib64 -lhdf5 -lblosc -lpython2.7 -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/indexesextension.so * python3_6: running distutils-r1_run_phase python_compile python3.6 setup.py build /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateqgce99_4.c:1:1: warning: return type defaults to ‘int’ [-Wimplicit-int] main (int argc, char **argv) { ^~~~ /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateqgce99_4.c: In function ‘main’: /var/tmp/portage/dev-python/pytables-3.4.2/temp/lzo_version_dateqgce99_4.c:2:5: warning: implicit declaration of function ‘lzo_version_date’ [-Wimplicit-function-declaration] lzo_version_date(); ^~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -llzo collect2: error: ld returned 1 exit status * Using Python 3.6.6 (default, Aug 10 2018, 01:32:36) * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``. * pkg-config header dirs for LZO 2: /usr/include/lzo * Could not find LZO 2 headers and library; disabling support for it. * Could not find LZO 1 headers and library; disabling support for it. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``. .. WARNING:: Could not find the bzip2 runtime. The bzip2 shared library was *not* found in the default library paths. In case of runtime problems, please remember to install it. * pkg-config library dirs for blosc: /usr/lib * Found blosc headers at ``/usr/include``, library at ``/usr/lib``. running build running build_py creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/vlarray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/utils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/unimplemented.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/undoredo.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/table.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/req_versions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/registry.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/path.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/parameters.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/node.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/link.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/leaf.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/index.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/idxutils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/group.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/flavor.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/filters.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/file.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/expression.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/exceptions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/earray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/description.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/conditions.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/carray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/attributeset.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/atom.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/array.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables copying tables/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_vlarray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_utils.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_types.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_tree.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_timetype.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_tablesMD.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_tables.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_queries.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_numpy.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_nestedtypes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_lists.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_links.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_indexvalues.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_index_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_hdf5compat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_garbage.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_expression.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_enum.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_earray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_do_undo.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_create.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_carray.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_basics.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_aux.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_attributes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_array.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_all.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/create_backcompat_indexes.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/common.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/check_leaks.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts copying tables/scripts/pttree.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts copying tables/scripts/ptrepack.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts copying tables/scripts/ptdump.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts copying tables/scripts/pt2to3.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts copying tables/scripts/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/scripts creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes copying tables/nodes/filenode.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes copying tables/nodes/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/misc copying tables/misc/proxydict.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/misc copying tables/misc/enum.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/misc copying tables/misc/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/misc creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests copying tables/nodes/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests copying tables/tests/zerodim-attrs-1.4.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/vlunicode_endian.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/vlstr_attr.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/times-nested-be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_szip.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_unsupptype.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_i64le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_i64be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_i32le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_i32be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_f64le.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_f64be.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_enum.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/slink.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/scalar.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/python3.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/python2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/oldflavor_numeric.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/non-chunked-table.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/nested-type-with-gaps.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/issue_560.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/issue_368.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/indexes_2_1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/indexes_2_0.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/idx-std-1.x.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/float.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/ex-noattr.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/elink2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/elink.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/bug-idx.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/blosc_bigendian.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/attr-u16.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/array_mdatom.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/Tables_lzo2.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/Tables_lzo1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_ref_array2.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/test_ref_array1.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/tests/matlab_file.mat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tests copying tables/nodes/tests/test_filenode.dat -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/nodes/tests /usr/lib64/python3.6/re.py:212: FutureWarning: split() requires a non-empty pattern match. return _compile(pattern, flags).split(string, maxsplit) /usr/lib64/python3.6/re.py:212: FutureWarning: split() requires a non-empty pattern match. return _compile(pattern, flags).split(string, maxsplit) /usr/lib64/python3.6/distutils/dist.py:261: UserWarning: Unknown distribution option: 'extra_require' warnings.warn(msg) warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'tables.utilsextension' extension creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6 creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc creating /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/utilsextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/utilsextension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/utilsextension.c:581: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/utilsextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/utilsextension.cpython-36m-x86_64-linux-gnu.so building 'tables.hdf5extension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/hdf5extension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/hdf5extension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/hdf5extension.c:580: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/typeconv.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/typeconv.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5ARRAY.c:4: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ARRAY-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY-opt.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5VLARRAY.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5VLARRAY.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/H5VLARRAY.c:3: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/hdf5extension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/typeconv.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5VLARRAY.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/hdf5extension.cpython-36m-x86_64-linux-gnu.so building 'tables.tableextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/tableextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/tableextension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/tableextension.c:581: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/utils.h:2, from src/utils.c:2: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/typeconv.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/typeconv.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5TB-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5TB-opt.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/tableextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/utils.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/typeconv.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5TB-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ATTR.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/hdf5-blosc/src/blosc_filter.o -L/usr/lib64 -lhdf5 -lblosc -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/tableextension.cpython-36m-x86_64-linux-gnu.so building 'tables._comp_lzo' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/_comp_lzo.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/_comp_lzo.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5Zlzo.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5Zlzo.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/_comp_lzo.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5Zlzo.o -L/usr/lib64 -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/_comp_lzo.cpython-36m-x86_64-linux-gnu.so building 'tables._comp_bzip2' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/_comp_bzip2.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/_comp_bzip2.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5Zbzip2.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5Zbzip2.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/_comp_bzip2.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5Zbzip2.o -L/usr/lib64 -lhdf5 -lbz2 -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/_comp_bzip2.cpython-36m-x86_64-linux-gnu.so building 'tables.linkextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/linkextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/linkextension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/linkextension.c:580: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/linkextension.o -L/usr/lib64 -lhdf5 -lblosc -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/linkextension.cpython-36m-x86_64-linux-gnu.so building 'tables.lrucacheextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/lrucacheextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/lrucacheextension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/lrucacheextension.c:580: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/lrucacheextension.o -L/usr/lib64 -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/lrucacheextension.cpython-36m-x86_64-linux-gnu.so building 'tables.indexesextension' extension x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c tables/indexesextension.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/indexesextension.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from tables/indexesextension.c:580: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/H5ARRAY-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY-opt.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fPIC -DNDEBUG=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include/python3.6m -c src/idx-opt.c -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/idx-opt.o -O2 -pipe -march=native -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from src/idx-opt.h:2, from src/idx-opt.c:2: /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=native /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/tables/indexesextension.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/H5ARRAY-opt.o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/temp.linux-x86_64-3.6/src/idx-opt.o -L/usr/lib64 -lhdf5 -lblosc -lpython3.6m -o /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python3_6/lib/tables/indexesextension.cpython-36m-x86_64-linux-gnu.so >>> Source compiled. >>> Test phase: dev-python/pytables-3.4.2 * python2_7: running distutils-r1_run_phase python_test -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= PyTables version: 3.4.2 HDF5 version: 1.10.1 NumPy version: 1.14.5 Numexpr version: 2.6.2 (not using Intel's VML/MKL) Zlib version: 1.2.11 (in Python interpreter) BZIP2 version: 1.0.6 (6-Sept-2010) Blosc version: 1.11.2 (2017-01-27) Blosc compressors: blosclz (1.0.5), lz4 (1.8.2), lz4hc (1.8.2), snappy (unknown), zlib (1.2.11) Blosc filters: shuffle, bitshuffle Cython version: 0.28.4 Python version: 2.7.15 (default, Aug 10 2018, 01:46:58) [GCC 7.3.0] Platform: Linux-4.18.2-x86_64-Intel-R-_Core-TM-_i7-3930K_CPU_@_3.20GHz-with-gentoo-2.6 Byte-ordering: little Detected cores: 12 Default encoding: ascii Default FS encoding: UTF-8 Default locale: (en_US, UTF-8) -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/filters.py:331: FiltersWarning: compression library ``lzo`` is not available; using ``zlib`` instead % (complib, default_complib), FiltersWarning) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_nestedtypes.py:126: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. testAData = numpy.array(testABuffer, dtype=testADescr) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/path.py:112: NaturalNameWarning: object name is not a valid Python identifier: 'a:b'; it does not match the pattern ``^[a-zA-Z_][a-zA-Z0-9_]*$``; you will not be able to use natural naming to access this object; using ``getattr()`` will still work, though NaturalNameWarning) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/path.py:112: NaturalNameWarning: object name is not a valid Python identifier: '/a/b'; it does not match the pattern ``^[a-zA-Z_][a-zA-Z0-9_]*$``; you will not be able to use natural naming to access this object; using ``getattr()`` will still work, though NaturalNameWarning) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/path.py:112: NaturalNameWarning: object name is not a valid Python identifier: '.'; it does not match the pattern ``^[a-zA-Z_][a-zA-Z0-9_]*$``; you will not be able to use natural naming to access this object; using ``getattr()`` will still work, though NaturalNameWarning) ............................................................................................................................/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:790: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. setattr(self.array.attrs, dtype, numpy.array(1, dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:807: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array(1, dtype=dtype)) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:817: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. setattr(self.array.attrs, dtype, numpy.array([1, 2], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:832: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([1, 2], dtype=dtype)) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:842: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr = numpy.array([1, 2, 3, 4], dtype=dtype)[::2] /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:854: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr = numpy.array([1, 2, 3, 4], dtype=dtype)[::2] ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:869: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1, 2], [2, 3]], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:884: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1, 2], [2, 3]], dtype=dtype)) ../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:921: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array(1.1, dtype=dtype)) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:948: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([1.1, 2.1], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:965: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([1.1, 2.1], dtype=dtype)) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:974: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr = numpy.array([1.1, 2.1, 3.1, 4.1], dtype=dtype)[1::2] /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:991: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr = numpy.array([1.1, 2.1, 3.1, 4.1], dtype=dtype)[1::2] ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1001: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1.1, 2.1], [2.1, 3.1]], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1019: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1.1, 2.1], [2.1, 3.1]], dtype=dtype)) ........../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1234: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([1.1, 2.1], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1251: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([1.1, 2.1], dtype=dtype)) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1260: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1.1, 2.1], [2.1, 3.1]], dtype=dtype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_attributes.py:1278: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[1.1, 2.1], [2.1, 3.1]], dtype=dtype)) .............................................................................................................................................................................................................................................................................................................................ssss.........Performing only a light (yet comprehensive) subset of the test suite. If you want a more complete test, try passing the --heavy flag to this script (or set the 'heavy' parameter in case you are using tables.test() call). The whole suite will take more than 4 hours to complete on a relatively modern CPU and around 512 MB of main memory. -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= version: 1.11.2 ............................................ss....................................................................................../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/array.py:715: FutureWarning: Conversion of the second argument of issubdtype from `int` to `np.signedinteger` is deprecated. In future, it will be treated as `np.int64 == np.dtype(int).type`. not numpy.issubdtype(nparr.dtype, int)): ........sssss../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/atom.py:1: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. # -*- coding: utf-8 -*- ........../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_types.py:280: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atom1 = Atom.from_dtype(numpy.dtype('Float64')) .........................................................................................................................................................................................................................................EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE................................................................................................................................................................................................................................ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss...................................................................................................................................................................................................................................../usr/lib64/python2.7/site-packages/numpy/core/records.py:847: FutureWarning: fromrecords expected a list of tuples, may have received a list of lists instead. In the future that will raise an error return fromrecords(obj, dtype=dtype, shape=shape, **kwds) .........................................................................................................EEE...................EEE................................EEEE...........................................................................................................EEEEEEEEEEEE.......................................................EEEEEEEE......................................................................................................ssssss...................................................................................................................................................................................................................................................................................................................................................................................................................................................sssssss........................................................ssssssssssssss........................................................./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1433: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Int32') ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1465: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Float64') ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1499: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Int32') ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1535: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Int32') ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1569: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Float64') ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1605: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1, 1, 1), (3, 3, 3)], dtype='Float64') .............../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1639: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1690: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) ..../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1884: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1922: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:1963: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) .................../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2180: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([[456, 2], [3, 457]], dtype='Int16')) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2199: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1[:], numpy.array([], dtype='Int16').reshape(0, 2))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2218: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.read(), numpy.array([[456, 2]], dtype='Int16'))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2238: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([[456, 2], [3, 457]], dtype='Int16'))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2259: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. dtype='Int16'))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_earray.py:2262: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. dtype='Int16'))) .........................................................................................ssssssssss......................................................................sssssssssssssss.................................................................sssss...............sssss................................................................................................................................................................................ssssssssssss............../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:692: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 0], numpy.array([1, 2, 3], dtype=atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:694: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1], numpy.array([-1, 0], dtype=atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:718: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1, 2, 3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:722: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1, 0], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:790: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 0], numpy.array([3, 2, 1], dtype=atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:792: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1], numpy.array([0, -1], dtype=atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:816: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1, 2, 3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:818: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1, 0], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:822: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([3, 2, 1], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:826: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([0, -1], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:874: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1, 2, 3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:876: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1, 0], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:880: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([3, 2, 1], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:884: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([0, -1], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1214: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1217: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([(0-1.3e34j), (1.e-32 + 0j)], atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:952: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 0], numpy.array([1.3, 2.2, 3.3], atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:954: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 1], numpy.array([-1.3e34, 1.e-32], atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:979: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1.3, 2.2, 3.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:983: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1.3e34, 1.e-32], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1266: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1269: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.array([(4-1.3e34j), (1.e-32 + 4j)], atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1050: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. 0], numpy.array([4.3, 2.2, 4.3], atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1052: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. allequal(row[1], numpy.array([-1.1e34, 1.3e-32], atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1077: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1.3, 2.2, 3.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1079: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1, 0], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1083: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([4.3, 2.2, 4.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1087: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1.1e34, 1.3e-32], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1136: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([1.3, 2.2, 3.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1138: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1, 0], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1142: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a0 = numpy.array([4.3, 2.2, 4.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1146: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a1 = numpy.array([-1.1e34, 1.3e-32], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/atom.py:1130: DeprecationWarning: Storing non bytestrings in VLStringAtom is deprecated. "deprecated.", DeprecationWarning) ....../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/atom.py:1187: DeprecationWarning: Storing bytestrings in VLUnicodeAtom is deprecated. "deprecated.", DeprecationWarning) ...................................../usr/lib64/python2.7/site-packages/numpy/core/numeric.py:188: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. a = empty(shape, dtype, order) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1857: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.zeros((2, 3), atype)]) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1871: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1873: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. allequal(row[1], numpy.array([numpy.ones((2, 3))*100], atype))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1906: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. numpy.zeros((5, 2, 6), atype)]) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1920: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atype))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:1923: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. atype))) ................/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2389: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr1 = list(numpy.array([1.3, 2.2, 3.3], atype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2390: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr2 = list(numpy.array([], atype)) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2391: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr3 = list(numpy.array([-1.3e34, 1.e-32], atype)) ..../var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2265: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr1 = numpy.array([1, 2, 3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2266: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr2 = numpy.array([], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2267: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr3 = numpy.array([100, 0], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2328: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr1 = numpy.array([1, 2, 3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2329: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr2 = numpy.array([], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2330: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr3 = numpy.array([100, 0], dtype=atype) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2393: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr1 = numpy.array([1.3, 2.2, 3.3], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2394: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr2 = numpy.array([], dtype=atype) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:2395: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. arr3 = numpy.array([-1.3e34, 1.e-32], dtype=atype) ............................................................................/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:3940: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([456, 2], dtype='Int16')) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:3941: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. array1.append(numpy.array([3], dtype='Int16')) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:3980: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. allequal(array1[0], numpy.array([456, 2], dtype='Int16'))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4000: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. allequal(array1[0], numpy.array([456, 2], dtype='Int16'))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4001: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. self.assertTrue(allequal(array1[1], numpy.array([3], dtype='Int16'))) ./var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4023: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. allequal(array1[0], numpy.array([456, 2], dtype='Int16'))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4024: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. self.assertTrue(allequal(array1[1], numpy.array([3], dtype='Int16'))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4027: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. self.assertTrue(allequal(array1[2], numpy.array([], dtype='Int16'))) /var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_vlarray.py:4028: DeprecationWarning: Numeric-style type codes are deprecated and will result in an error in the future. self.assertTrue(allequal(array1[3], numpy.array([], dtype='Int16'))) ...................................s...............................................................................................................................................................................................................................................................................................s...s.............................................................................................................................................................................................................................................................................................................................................:1: RuntimeWarning: invalid value encountered in arcsin ........................................:1: RuntimeWarning: invalid value encountered in arccos ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ssssssssssssssssssss..................................................................................................................................................E.............E.............E...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ====================================================================== ERROR: test00_description (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table description and descriptive fields. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_badtypefield (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read (using Row[{}]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_extslice (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read (using Row[::2]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_fetch_all_fields (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read (using Row.fetch_all_fields) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_integer (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read (using Row[integer]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_nofield (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read (using Row['no-field']) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01b_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking table read and cuts (multidimensional columns case) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01c_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking nested iterators (reading) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01d_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking nested iterators (reading, mixed conditions) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01e_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking nested iterators (reading, both conditions) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01f_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking nested iterators (reading, break in the loop) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01g_readTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking iterator with an evanescent table. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02_AppendRows (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether appending record rows works or not. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02b_AppendRows (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether appending *and* reading rows works or not ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02d_AppendRows (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking appending using the same Row object after flushing. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02e_AppendRows (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking appending using the Row of an unreferenced table. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test03_endianess (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking if table is endianess aware. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether a single row can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04a_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether a single row can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04b_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether a range of rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04c_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether removing a bad range of rows is detected. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04d_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether removing rows several times at once is working. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04e_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether all rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04f_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether all rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04g_delete (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking whether rows can be deleted with a step parameter. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test05_filtersTable (tables.tests.test_tables.RecArrayTwoWriteTestCase) Checking tablefilters. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test06_attributes (tables.tests.test_tables.RecArrayTwoWriteTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test00_description (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table description and descriptive fields. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_badtypefield (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read (using Row[{}]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_extslice (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read (using Row[::2]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_fetch_all_fields (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read (using Row.fetch_all_fields) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_integer (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read (using Row[integer]) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01a_nofield (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read (using Row['no-field']) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01b_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking table read and cuts (multidimensional columns case) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01c_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking nested iterators (reading) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01d_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking nested iterators (reading, mixed conditions) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01e_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking nested iterators (reading, both conditions) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01f_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking nested iterators (reading, break in the loop) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test01g_readTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking iterator with an evanescent table. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02_AppendRows (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether appending record rows works or not. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02b_AppendRows (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether appending *and* reading rows works or not ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02d_AppendRows (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking appending using the same Row object after flushing. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test02e_AppendRows (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking appending using the Row of an unreferenced table. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test03_endianess (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking if table is endianess aware. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether a single row can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04a_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether a single row can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04b_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether a range of rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04c_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether removing a bad range of rows is detected. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04d_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether removing rows several times at once is working. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04e_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether all rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04f_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether all rows can be deleted. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test04g_delete (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking whether rows can be deleted with a step parameter. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test05_filtersTable (tables.tests.test_tables.RecArrayThreeWriteTestCase) Checking tablefilters. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: test06_attributes (tables.tests.test_tables.RecArrayThreeWriteTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 138, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 213, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 207, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) TypeError: a float is required ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO1) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4296, in test09b formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO1) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4331, in test09c formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO1) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4368, in test09d formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO2) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4296, in test09b formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO2) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4331, in test09c formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.RecArrayIO2) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 4368, in test09d formats="a3,f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: could not convert string to float: aaa ====================================================================== ERROR: None (tables.tests.test_tables.DefaultValues) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 5180, in test00 r = records.array([values]*nrows, formats=','.join(formats)) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: invalid literal for long() with base 10: 'abcd' ====================================================================== ERROR: None (tables.tests.test_tables.DefaultValues) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 5254, in test01 r = records.array([values]*nrows, formats=','.join(formats)) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: invalid literal for long() with base 10: 'abcd' ====================================================================== ERROR: None (tables.tests.test_tables.OldRecordDefaultValues) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 5180, in test00 r = records.array([values]*nrows, formats=','.join(formats)) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: invalid literal for long() with base 10: 'abcd' ====================================================================== ERROR: None (tables.tests.test_tables.OldRecordDefaultValues) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tables.py", line 5254, in test01 r = records.array([values]*nrows, formats=','.join(formats)) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: invalid literal for long() with base 10: 'abcd' ====================================================================== ERROR: test00_description (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking table description and descriptive fields. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01_readTable (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking table read and cuts. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01b_readTable (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking table read and cuts (multidimensional columns case) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01c_readTable (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking shape of multidimensional columns. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test02_AppendRows (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking whether appending record rows works or not. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test03_endianess (tables.tests.test_tablesMD.RecArrayTwoWriteTestCase) Checking if table is endianess aware. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test00_description (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking table description and descriptive fields. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01_readTable (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking table read and cuts. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01b_readTable (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking table read and cuts (multidimensional columns case) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test01c_readTable (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking shape of multidimensional columns. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test02_AppendRows (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking whether appending record rows works or not. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: test03_endianess (tables.tests.test_tablesMD.RecArrayThreeWriteTestCase) Checking if table is endianess aware. ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 87, in setUp self.populateFile() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 129, in populateFile self.initRecArray() File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 123, in initRecArray shape=self.expectedrows) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: setting an array element with a sequence. ====================================================================== ERROR: None (tables.tests.test_tablesMD.DefaultValues) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1248, in test00 'var6', 'var7']) # *-* File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: invalid literal for long() with base 10: '' ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1013, in test00 names='col1,col2,col3') File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 2 to array axis with dimension 3 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1036, in test01 names='col1,col2,col3') File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 2 to array axis with dimension 3 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1062, in test02 names='col1,col2,col3') File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 6 to array axis with dimension 2 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1088, in test03 names='col1,col2,col3', shape=300) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 6 to array axis with dimension 2 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1118, in test08a formats="(2,)i4,(3,)a3,(3,2)f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 2 to array axis with dimension 3 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1153, in test08b formats="(2,)i4,(3,)a3,(3,2)f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 2 to array axis with dimension 3 ====================================================================== ERROR: None (tables.tests.test_tablesMD.RecArrayIO) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_tablesMD.py", line 1191, in test08b2 formats="(2,)i4,(3,)a3,(3,2)f8") File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 847, in array return fromrecords(obj, dtype=dtype, shape=shape, **kwds) File "/usr/lib64/python2.7/site-packages/numpy/core/records.py", line 708, in fromrecords retval = sb.array(recList, dtype=descr) ValueError: cannot copy sequence with size 2 to array axis with dimension 3 ====================================================================== ERROR: None (tables.tests.test_indexes.AI1TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_indexes.py", line 1229, in test07_noauto table.modify_rows(3, None, 1, [["asa", 0, 3, 3.1]]) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2328, in modify_rows recarr = self._conv_to_recarr(rows) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2250, in _conv_to_recarr (self.description._v_nested_descr, exc)) ValueError: Object cannot be converted into a recarray object compliant with table format '[('var1', '()S4'), ('var2', '()b1'), ('var3', '()i4'), ('var4', '()f8')]'. The error was: ====================================================================== ERROR: None (tables.tests.test_indexes.AI2TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_indexes.py", line 1229, in test07_noauto table.modify_rows(3, None, 1, [["asa", 0, 3, 3.1]]) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2328, in modify_rows recarr = self._conv_to_recarr(rows) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2250, in _conv_to_recarr (self.description._v_nested_descr, exc)) ValueError: Object cannot be converted into a recarray object compliant with table format '[('var1', '()S4'), ('var2', '()b1'), ('var3', '()i4'), ('var4', '()f8')]'. The error was: ====================================================================== ERROR: None (tables.tests.test_indexes.AI9TestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/tests/test_indexes.py", line 1229, in test07_noauto table.modify_rows(3, None, 1, [["asa", 0, 3, 3.1]]) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2328, in modify_rows recarr = self._conv_to_recarr(rows) File "/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib/tables/table.py", line 2250, in _conv_to_recarr (self.description._v_nested_descr, exc)) ValueError: Object cannot be converted into a recarray object compliant with table format '[('var1', '()S4'), ('var2', '()b1'), ('var3', '()i4'), ('var4', '()f8')]'. The error was: ---------------------------------------------------------------------- Ran 6176 tests in 374.340s FAILED (errors=89, skipped=192) Closing remaining open 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ge/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaseLvei3h.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCased46EJk.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayTwoWriteTestCase4NJr3X.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaseiRPjP_.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaseHchyFn.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCase23oHZa.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayTwoWriteTestCasehcYldX.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaseFA7ea9.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayTwoWriteTestCase5ASZdJ.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayTwoWriteTestCaseEGyvbC.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaseGcTun6.h5...done/var/tmp/portage/dev-python/pytables-3.4.2/temp/RecArrayThreeWriteTestCaselXPYrj.h5...done * ERROR: dev-python/pytables-3.4.2::gentoo failed (test phase): * (no error message) * * Call stack: * ebuild.sh, line 124: Called src_test * environment, line 2699: Called distutils-r1_src_test * environment, line 922: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 373: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 2208: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 1576: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 1574: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 585: Called distutils-r1_run_phase 'python_test' * environment, line 853: Called python_test * environment, line 2601: Called die * The specific snippet of code: * ${EPYTHON} tables/tests/test_all.py || die * * If you need support, post the output of `emerge --info '=dev-python/pytables-3.4.2::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/pytables-3.4.2::gentoo'`. * The complete build log is located at '/var/log/portage/dev-python:pytables-3.4.2:20180818-082658.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/pytables-3.4.2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/pytables-3.4.2/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2-python2_7/lib' * S: '/var/tmp/portage/dev-python/pytables-3.4.2/work/tables-3.4.2'