build.log

build.log (text/x-log), 50.11 KB, created by Juergen Rose on 2018-07-26 21:00:29 UTC

[32;01m * [39;49;00mPackage:    sci-libs/cgnslib-3.3.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 doc elibc_glibc examples fortran hdf5 kernel_linux mpi szip tools userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
 [32;01m*[0m Using following Fortran compiler:
 [32;01m*[0m   F77: x86_64-pc-linux-gnu-gfortran
 [32;01m*[0m   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking cgnslib-3.3.0.tar.gz to /var/tmp/portage/sci-libs/cgnslib-3.3.0/work
>>> Source unpacked in /var/tmp/portage/sci-libs/cgnslib-3.3.0/work
>>> Preparing source in /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build"
cmake -C /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCGNS_BUILD_SHARED=ON -DCGNS_USED_SHARED=ON -DCGNS_BUILD_CGNSTOOLS=yes -DCGNS_ENABLE_FORTRAN=yes -DCGNS_ENABLE_HDF5=yes -DCGNS_ENABLE_LEGACY=no -DCGNS_ENABLE_TESTS=no -DHDF5_NEED_MPI=yes -DHDF5_NEED_SZIP=yes -DHDF5_NEED_ZLIB=yes -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0
loading initial cache file /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/gentoo_common_config.cmake
Re-run cmake no build system arguments
CMake Deprecation Warning at CMakeLists.txt:5 (cmake_policy):
  The OLD behavior for policy CMP0015 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- The C compiler identification is GNU 7.3.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of long
-- Check size of long - done
-- Check size of off_t
-- Check size of off_t - done
-- The Fortran compiler identification is GNU 7.3.0
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes
-- Trying Fortran naming convention LOWERCASE: failure
-- Trying Fortran naming convention LOWERCASE_: success
-- Setting fortran naming convention to LOWERCASE_
-- HDF5 find comps: C;shared
-- Could NOT find HDF5 (missing: HDF5_DIR)
-- HDF5 C libs:0 static: and shared:
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.1")  
-- HDF5- found: INC=/usr/include TOOLS=/../bin HDF5_BUILD_SHARED_LIBS=0
-- HDF5 link libs: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
-- Found MPI_C: /usr/lib64/libmpich.so (found version "2.2") 
-- Found MPI_Fortran: /usr/lib64/libmpichf90.so (found version "2.2") 
-- Found MPI: TRUE (found version "2.2")  
-- Testing Fortran Fortran2003 - OK
-- Testing Fortran Fortran2008TS - OK
-- Testing Fortran Fortran2008 - Fail
-- Testing Fortran Sizeof_int - OK
-- Testing HDF5 Multi_Dataset - NOT FOUND
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/libX11.so
-- Found Tclsh: /usr/bin/tclsh (found version "8.6") 
-- Found TCL: /usr/lib/libtcl.so  
-- Found TCLTK: /usr/lib/libtcl.so  
-- Found TK: /usr/lib/libtk.so  
-- Found OpenGL: /usr/lib/libGL.so   
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -march=broadwell -O2 -pipe
C++             
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed
Module          -Wl,-O1 -Wl,--as-needed
Shared          -Wl,-O1 -Wl,--as-needed

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CGNS_USED_SHARED


-- Build files have been written to: /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0 ...
make -j1 cgns_f.o 
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build && make -f src/CMakeFiles/cgns_static.dir/build.make src/CMakeFiles/cgns_static.dir/cgns_f.F90.o
make[1]: Entering directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
[32mBuilding Fortran object src/CMakeFiles/cgns_static.dir/cgns_f.F90.o[0m
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gfortran -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -DLOWERCASE_ -I/usr/include -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src  -O2 -pipe -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/cgns_f.F90.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_f.F90
make[1]: Leaving directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build && make -f src/CMakeFiles/cgns_shared.dir/build.make src/CMakeFiles/cgns_shared.dir/cgns_f.F90.o
make[1]: Entering directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
[32mBuilding Fortran object src/CMakeFiles/cgns_shared.dir/cgns_f.F90.o[0m
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gfortran -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -Dcgns_shared_EXPORTS -DLOWERCASE_ -I/usr/include -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src  -O2 -pipe -march=broadwell -O2 -pipe -fPIC   -o CMakeFiles/cgns_shared.dir/cgns_f.F90.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_f.F90
make[1]: Leaving directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build"
make -j1 VERBOSE=1 
/usr/bin/cmake -H/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0 -B/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/CMakeFiles /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
make -f src/CMakeFiles/cgns_static.dir/build.make src/CMakeFiles/cgns_static.dir/depend
make[2]: Entering directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0 /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/CMakeFiles/cgns_static.dir/DependInfo.cmake --color=
Dependee "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/CMakeFiles/cgns_static.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/CMakeFiles/cgns_static.dir/depend.internal".
Dependee "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/CMakeFiles/cgns_static.dir/depend.internal".
[35m[1mScanning dependencies of target cgns_static[0m
make[2]: Leaving directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
make -f src/CMakeFiles/cgns_static.dir/build.make src/CMakeFiles/cgns_static.dir/build
make[2]: Entering directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
/usr/bin/cmake -E cmake_copy_f90_mod src/cgns.mod src/CMakeFiles/cgns_static.dir/cgns.mod.stamp GNU
/usr/bin/cmake -E touch src/CMakeFiles/cgns_static.dir/cgns_f.F90.o.provides.build
[  1%] [32mBuilding C object src/CMakeFiles/cgns_static.dir/cgns_error.c.o[0m
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/cgns_error.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_error.c
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cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/cgns_internals.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_internals.c
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cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/cgns_io.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_io.c
[01m[K/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/cgns_io.c:[m[K In function ‘[01m[Kcgio_check_file[m[K’:
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[  4%] [32mBuilding C object src/CMakeFiles/cgns_static.dir/adf/ADF_interface.c.o[0m
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/adf/ADF_interface.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/adf/ADF_interface.c
[01m[K/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/adf/ADF_interface.c:[m[K In function ‘[01m[KADF_Database_Valid[m[K’:
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cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/adf/ADF_internals.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/adf/ADF_internals.c
[  5%] [32mBuilding C object src/CMakeFiles/cgns_static.dir/adfh/ADFH.c.o[0m
cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/x86_64-pc-linux-gnu-gcc -DBUILD_HDF5 -DH5_BUILT_AS_STATIC_LIB -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/. -I/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src   -DNDEBUG -march=broadwell -O2 -pipe   -o CMakeFiles/cgns_static.dir/adfh/ADFH.c.o -c /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0/src/adfh/ADFH.c
[  6%] [32mBuilding C object src/CMakeFiles/cgns_static.dir/cg_ftoc.c.o[0m
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cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgns_static.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-ar qc libcgns.a  CMakeFiles/cgns_static.dir/cgns_error.c.o CMakeFiles/cgns_static.dir/cgns_internals.c.o CMakeFiles/cgns_static.dir/cgns_io.c.o CMakeFiles/cgns_static.dir/cgnslib.c.o CMakeFiles/cgns_static.dir/adf/ADF_interface.c.o CMakeFiles/cgns_static.dir/adf/ADF_internals.c.o CMakeFiles/cgns_static.dir/adfh/ADFH.c.o CMakeFiles/cgns_static.dir/cg_ftoc.c.o CMakeFiles/cgns_static.dir/cgio_ftoc.c.o CMakeFiles/cgns_static.dir/cgns_f.F90.o
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cd /var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src/cgnstools/cgnsview && /usr/bin/cmake -E cmake_link_script CMakeFiles/cgiowish.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-gcc -march=broadwell -O2 -pipe  -Wl,-O1 -Wl,--as-needed -rdynamic CMakeFiles/cgiowish.dir/cgiowish.c.o CMakeFiles/cgiowish.dir/cgiotcl.c.o  -o cgiowish -Wl,-rpath,/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build/src: ../../libcgns.so.3.3 -ltcl -ltk -lhdf5 -lsz -lz -ldl -lm -lz -lmpich -lopa -lmpl -lrt -lpthread -lX11 -lm 
CMakeFiles/cgiowish.dir/cgiowish.c.o:(.data.rel+0x0): undefined reference to `matherr'
collect2: error: ld returned 1 exit status
make[2]: *** [src/cgnstools/cgnsview/CMakeFiles/cgiowish.dir/build.make:114: src/cgnstools/cgnsview/cgiowish] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
make[1]: *** [CMakeFiles/Makefile2:509: src/cgnstools/cgnsview/CMakeFiles/cgiowish.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
make: *** [Makefile:152: all] Error 2
 [31;01m*[0m ERROR: sci-libs/cgnslib-3.3.0::gentoo failed (compile phase):
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/cgnslib-3.3.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/cgnslib-3.3.0::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/log/portage/sci-libs:cgnslib-3.3.0:20180726-205408.log'.
 [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cgnslib-3.3.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/cgnslib-3.3.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/cgnslib-3.3.0_build'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/cgnslib-3.3.0/work/CGNS-3.3.0'