* Package: sci-mathematics/octave-4.2.1  * Repository: gentoo  * Maintainer: sci-mathematics@gentoo.org  * USE: X abi_x86_64 amd64 elibc_glibc glpk imagemagick kernel_linux opengl qhull qrupdate readline sparse userland_GNU zlib  * FEATURES: preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking octave-4.2.1.tar.gz to /var/tmp/portage/sci-mathematics/octave-4.2.1/work >>> Source unpacked in /var/tmp/portage/sci-mathematics/octave-4.2.1/work >>> Preparing source in /var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1 ... * Applying octave-4.2.0-texi.patch ...  [ ok ] * Applying octave-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch ...  [ ok ] * Applying octave-4.2.0-imagemagick-configure.patch ...  [ ok ] * Applying octave-4.2.0-imagemagick.patch ...  [ ok ] * Applying octave-4.2.0-pkgbuilddir.patch ...  [ ok ] * Applying octave-4.2.0-ncurses-pkgconfig.patch ...  [ ok ] * Applying octave-4.2.0-zlib-underlinking.patch ...  [ ok ] * Applying octave-4.2.0-fix-qscintilla-detection.patch ...  [ ok ] * Running eautoreconf in '/var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1' ... * Running libtoolize --install --copy --force --automake ...  [ ok ] * Running aclocal -I m4 ...  [ ok ] * Running autoconf --force ...  [ ok ] * Running autoheader ...  [ ok ] * Running automake --add-missing --copy --force-missing ...  [ ok ] * Running elibtoolize in: octave-4.2.1/ * Running elibtoolize in: octave-4.2.1/build-aux/ * Applying portage/1.2.0 patch ... * Applying sed/1.5.6 patch ... * Applying as-needed/2.4.3 patch ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1 ... * econf: updating octave-4.2.1/build-aux/config.sub with /usr/share/gnuconfig/config.sub * econf: updating octave-4.2.1/build-aux/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/octave-4.2.1 --htmldir=/usr/share/doc/octave-4.2.1/html --libdir=/usr/lib64 --localstatedir=/var/state/octave --with-blas=-lblas --with-lapack=-llapack -lblas --disable-64 --disable-jit --enable-shared --with-z --with-bz2 --without-OSMesa --disable-static --disable-docs --disable-java --enable-readline --without-curl --without-fftw3 --without-fftw3f --disable-fftw-threads --with-glpk --without-hdf5 --with-magick=ImageMagick --with-opengl --with-fltk --without-openssl --without-portaudio --with-qhull --with-qrupdate --without-qt --without-sndfile --with-arpack --with-umfpack --with-colamd --with-ccolamd --with-cholmod --with-cxsparse --with-x checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '250' is supported by ustar format... yes checking whether GID '250' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking whether make supports the include directive... yes (GNU style) checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed checking dependency style of x86_64-pc-linux-gnu-gcc... none checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no defining octlibdir to be ${libdir}/octave/${version} defining archlibdir to be ${libexecdir}/octave/${version}/exec/${canonical_host_type} defining localarchlibdir to be ${libexecdir}/octave/site/exec/${canonical_host_type} defining localapiarchlibdir to be ${libexecdir}/octave/${api_version}/site/exec/${canonical_host_type} defining localverarchlibdir to be ${libexecdir}/octave/${version}/site/exec/${canonical_host_type} defining octfiledir to be ${libdir}/octave/${version}/oct/${canonical_host_type} defining localoctfiledir to be ${libdir}/octave/site/oct/${canonical_host_type} defining localapioctfiledir to be ${libdir}/octave/site/oct/${api_version}/${canonical_host_type} defining localveroctfiledir to be ${libdir}/octave/${version}/site/oct/${canonical_host_type} defining octincludedir to be ${includedir}/octave-${version}/octave defining fcnfiledir to be ${datadir}/octave/${version}/m defining localfcnfiledir to be ${datadir}/octave/site/m defining localapifcnfiledir to be ${datadir}/octave/site/${api_version}/m defining localverfcnfiledir to be ${datadir}/octave/${version}/site/m defining octetcdir to be ${datadir}/octave/${version}/etc defining octlocaledir to be ${datadir}/octave/${version}/locale defining doc_cache_file to be ${octetcdir}/doc-cache defining octtestsdir to be ${octetcdir}/tests defining texi_macros_file to be ${octetcdir}/macros.texi defining imagedir to be ${datadir}/octave/${version}/imagelib defining octdatadir to be ${datadir}/octave/${version}/data defining startupfiledir to be ${fcnfiledir}/startup defining localstartupfiledir to be ${localfcnfiledir}/startup defining man1dir to be ${mandir}/man1 defining man1ext to be .1 defining infofile to be ${infodir}/octave.info checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for gawk... (cached) gawk checking for grep that handles long lines and -e... (cached) /bin/grep checking for gfind... no checking for find... find checking for a usable sed... /bin/sed checking for perl... perl checking for gperf... gperf checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes defining LFLAGS to be -I checking for bison... bison -y checking syntax of bison api.prefix (or name-prefix) declaration... api brace checking syntax of bison push/pull declaration... dash checking for makeinfo... makeinfo checking for texi2dvi... texi2dvi checking for texi2pdf... texi2pdf checking whether ln -s works... yes checking for desktop-file-install... desktop-file-install checking for gs... gs checking for gnuplot... gnuplot checking for less... less checking for python... python checking for icotool... no configure: WARNING: I didn't find icotool, but it's only a problem if you need to reconstruct octave-logo.ico, which is the case if you're building from VCS sources. checking for rsvg-convert... rsvg-convert configure: WARNING: building documentation disabled; make dist will fail configure: defining __NO_MATH_INLINES avoids buggy GNU libc exp function checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes checking for x86_64-pc-linux-gnu-g++ option to enable C++11 features... none needed checking dependency style of x86_64-pc-linux-gnu-g++... none checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking whether x86_64-pc-linux-gnu-gcc needs -traditional... no checking for Minix Amsterdam compiler... no checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar checking for x86_64-pc-linux-gnu-ar... 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PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for OpenMP flag of C compiler... -fopenmp checking for OpenMP flag of C++ compiler... -fopenmp checking omp.h usability... yes checking omp.h presence... yes checking for omp.h... yes checking for omp_get_num_threads... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... (cached) x86_64-pc-linux-gnu-ranlib checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-pc-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: defining FPICFLAG to be -fPIC configure: defining CPICFLAG to be -fPIC configure: defining CXXPICFLAG to be -fPIC configure: defining SH_LD to be x86_64-pc-linux-gnu-g++ configure: defining SH_LDFLAGS to be -shared configure: defining DL_LD to be x86_64-pc-linux-gnu-g++ configure: defining DL_LDFLAGS to be -shared configure: defining MKOCTFILE_DL_LDFLAGS to be -shared -Wl,-Bsymbolic configure: defining NO_OCT_FILE_STRIP to be false configure: defining TEMPLATE_AR to be x86_64-pc-linux-gnu-ar configure: defining TEMPLATE_ARFLAGS to be cr configure: defining CRUFT_DLL_DEFS to be configure: defining OCTAVE_DLL_DEFS to be configure: defining OCTINTERP_DLL_DEFS to be configure: defining OCTGUI_DLL_DEFS to be configure: defining OCTGRAPHICS_DLL_DEFS to be configure: defining library_path_var to be LD_LIBRARY_PATH checking for sin in -lm... yes checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether a usable Fortran compiler was found... yes checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore configure: defining FFLAGS to be -O2 -pipe checking whether x86_64-pc-linux-gnu-gfortran has the intrinsic function ISNAN... yes checking whether x86_64-pc-linux-gnu-gfortran generates correct size integers... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -ffloat-store... yes setting F77_FLOAT_STORE_FLAG to -ffloat-store checking whether x86_64-pc-linux-gnu-g++ accepts -rdynamic... yes configure: defining CROSS_TOOL_PREFIX to be configure: defining MKOCTFILE_AR to be x86_64-pc-linux-gnu-ar configure: defining MKOCTFILE_CC to be x86_64-pc-linux-gnu-gcc configure: defining MKOCTFILE_CXX to be x86_64-pc-linux-gnu-g++ configure: defining MKOCTFILE_DL_LD to be x86_64-pc-linux-gnu-g++ configure: defining MKOCTFILE_F77 to be x86_64-pc-linux-gnu-gfortran configure: defining MKOCTFILE_LD_CXX to be x86_64-pc-linux-gnu-g++ configure: defining MKOCTFILE_RANLIB to be x86_64-pc-linux-gnu-ranlib checking libqhull/libqhull.h usability... yes checking libqhull/libqhull.h presence... yes checking for libqhull/libqhull.h... yes checking for qh_qhull in -lqhull... yes checking for qh_version in -lqhull... yes checking whether the qhull library works... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking whether pcre.h defines the macros we need... yes checking for pcre-config... yes checking for pcre_compile... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for gzclearerr in -lz... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzCompressInit in -lbz2... yes configure: WARNING: --without-hdf5 specified. Functions or features that depend on HDF5 will be disabled. configure: WARNING: --without-fftw3 specified. Functions or features that depend on FFTW3 will be disabled. configure: WARNING: --without-fftw3f specified. Functions or features that depend on FFTW3F will be disabled. checking glpk/glpk.h usability... no checking glpk/glpk.h presence... no checking for glpk/glpk.h... no checking glpk.h usability... yes checking glpk.h presence... yes checking for glpk.h... yes checking for glp_simplex in -lglpk... yes checking whether the glpk library has glp_interior(glp_prob*, glp_iptcp*)... yes configure: WARNING: --without-curl specified. Functions or features that depend on cURL will be disabled. configure: WARNING: --without-sndfile specified. Functions or features that depend on sndfile will be disabled. configure: WARNING: --without-portaudio specified. Functions or features that depend on PortAudio will be disabled. configure: WARNING: ImageMagick++ library not found. The imread, imwrite, and imfinfo functions for reading and writing image files will not be fully functional. checking for X... libraries , headers checking for XrmInitialize in -lX11... yes checking whether /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 accepts -framework Carbon... no checking whether /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 accepts -framework OpenGL... no checking for GL/gl.h... yes checking for GL/glu.h... yes checking for GL/glext.h... yes checking for OpenGL/glext.h... no checking for glEnable in -lGL... yes checking for FT2... yes checking for FreeType2 version >= 9.03... yes checking for FT_Reference_Face... yes checking for XFT... yes checking for FONTCONFIG... yes configure: WARNING: --without-OSMesa specified. Functions or features that depend on OSMesa will be disabled. checking gl2ps.h usability... yes checking gl2ps.h presence... yes checking for gl2ps.h... yes configure: WARNING: --without-qt specified. The Qt GUI will be disabled. checking for fltk-config... /usr/bin/fltk-config checking for OpenGL support in FLTK... yes checking for sgemm_ in -lblas... no checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... no checking for sgemm_ in -lmkl_intel_lp64... no checking for sgemm_ in -lmkl... no checking for sgemm_ in -framework vecLib... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) no checking for sgemm_ in -lblas... (cached) no checking for sgemm_ in -lblas... no checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... (cached) no checking for ATL_xerbla in -latlas... (cached) no checking for sgemm_ in -lblas... (cached) no checking for sgemm_ in -lmkl_intel_lp64... (cached) no checking for sgemm_ in -lmkl... (cached) no checking for sgemm_ in -framework vecLib... no checking for sgemm_ in -lcxml... (cached) no checking for sgemm_ in -ldxml... (cached) no checking for sgemm_ in -lscs... (cached) no checking for sgemm_ in -lcomplib.sgimath... (cached) no checking for sgemm_ in -lblas... (cached) no checking for sgemm_ in -lblas... (cached) no configure: error: A BLAS library was detected but found incompatible with your Fortran 77 compiler settings. !!! Please attach the following file when seeking support: !!! /var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1/config.log * ERROR: sci-mathematics/octave-4.2.1::gentoo failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 124: Called src_configure * environment, line 4671: Called econf '--localstatedir=/var/state/octave' '--with-blas=-lblas' '--with-lapack=-llapack -lblas' '--disable-64' '--disable-jit' '--enable-shared' '--with-z' '--with-bz2' '--without-OSMesa' '--disable-static' '--disable-docs' '--disable-java' '--enable-readline' '--without-curl' '--without-fftw3' '--without-fftw3f' '--disable-fftw-threads' '--with-glpk' '--without-hdf5' '--with-magick=ImageMagick' '--with-opengl' '--with-fltk' '--without-openssl' '--without-portaudio' '--with-qhull' '--with-qrupdate' '--without-qt' '--without-sndfile' '--with-arpack' '--with-umfpack' '--with-colamd' '--with-ccolamd' '--with-cholmod' '--with-cxsparse' '--with-x' * phase-helpers.sh, line 666: Called __helpers_die 'econf failed' * isolated-functions.sh, line 117: Called die * The specific snippet of code: * die "$@" * * If you need support, post the output of `emerge --info '=sci-mathematics/octave-4.2.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/octave-4.2.1::gentoo'`. !!! When you file a bug report, please include the following information: GENTOO_VM= CLASSPATH="" JAVA_HOME="" JAVACFLAGS="" COMPILER="" and of course, the output of emerge --info =octave-4.2.1 * The complete build log is located at '/var/tmp/portage/sci-mathematics/octave-4.2.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/octave-4.2.1/temp/environment'. * Working directory: '/var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1' * S: '/var/tmp/portage/sci-mathematics/octave-4.2.1/work/octave-4.2.1'