* Package: sci-chemistry/avogadro-1.2.0_p20170207 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 cpu_flags_x86_sse2 elibc_glibc glsl kernel_linux python python_targets_python2_7 userland_GNU * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Source unpacked in /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work >>> Preparing source in /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 ... * Applying avogadro-1.1.1-mkspecs-dir.patch ... [ ok ] * Applying avogadro-1.1.1-no-strip.patch ... [ ok ] * Applying avogadro-1.1.1-pkgconfig_eigen.patch ... [ ok ] * Applying avogadro-1.1.1-openbabel.patch ... [ ok ] * Applying avogadro-1.1.1-boost-join-moc.patch ... [ ok ] * Applying avogadro-1.2.0-numpy.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build" cmake -C /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_THREADEDGL=OFF -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DQT_MKSPECS_DIR=/usr/share/qt4/mkspecs -DWITH_SSE2=yes -DENABLE_GLSL=yes -DENABLE_PYTHON=yes -DENABLE_TESTS=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/gentoo_toolchain.cmake /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 loading initial cache file /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/gentoo_common_config.cmake -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is Gentoo -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Enabling the SSE2 instruction set -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0") -- Found OpenGL: /usr/lib/libGL.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/libX11.so -- Found lupdate: /usr/bin/lupdate -- Found lrelease: /usr/bin/lrelease -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.29.2") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found OpenBabel2 executable: /usr/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.65.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/temp/python2.7/bin/python (found version "2.7.14") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267015 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries failed to create symbolic link '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include/avogadro//var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib64/python2.7/site-packages -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- <<< Gentoo configuration >>> Build type Gentoo Install path /usr Compiler flags: C -O2 -pipe -march=native C++ -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 Linker flags: Executable -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed Module -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed Shared -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/lib64/qt4/libQtOpenGL.so;/usr/lib64/qt4/libQtGui.so;/usr/lib64/qt4/libQtCore.so;/usr/lib/libGL.so;/usr/lib/libGLU.so;/usr/lib/libGLEW.so;/usr/lib/libpython2.7.so;/usr/lib/libboost_python-2.7-mt.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$>:/usr/lib64/qt4/libQtCore.so>;$<$:/usr/lib64/qt4/libQtCore.so>;$<$>:/usr/lib64/qt4/libQtGui.so>;$<$:/usr/lib64/qt4/libQtGui.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build" make -j 1 VERBOSE=1 /usr/bin/cmake -H/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 -B/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/CMakeFiles /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Generating moc_elementcolor.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/moc_elementcolor.cxx_parameters cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/colors /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend.internal". Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend.internal". Scanning dependencies of target elementcolor make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/colors/elementcolor.cpp [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors/moc_elementcolor.cxx [ 0%] Linking CXX static library elementcolor.a cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/x86_64-pc-linux-gnu-ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/x86_64-pc-linux-gnu-ranlib elementcolor.a make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Built target elementcolor make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Generating ui_bsdysettingswidget.h cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/lib64/qt4/bin/uic -o /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines/ui_bsdysettingswidget.h /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/engines/bsdysettingswidget.ui [ 0%] Generating moc_bsdyengine.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines/moc_bsdyengine.cxx_parameters cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend.internal". Scanning dependencies of target bsdyengine make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/engines/bsdyengine.cpp [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines/moc_bsdyengine.cxx [ 0%] Linking CXX static library bsdyengine.a cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/x86_64-pc-linux-gnu-ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/x86_64-pc-linux-gnu-ranlib bsdyengine.a make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Built target bsdyengine make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Generating qrc_navigatetool.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name navigatetool -o /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/qrc_navigatetool.cxx /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/tools/navigatetool.qrc [ 0%] Generating moc_navigatetool.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/moc_navigatetool.cxx_parameters [ 0%] Generating ui_navigatesettingswidget.h cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/lib64/qt4/bin/uic -o /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/ui_navigatesettingswidget.h /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/tools/navigatesettingswidget.ui cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207 /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/tools /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend.internal". Dependee "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend.internal". Scanning dependencies of target navigatetool make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/tools/navigatetool.cpp [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/tools/eyecandy.cpp [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd 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CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/moc_navigatetool.cxx [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/bin/x86_64-pc-linux-gnu-g++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_DEFAULT_SOURCE -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools -DNDEBUG -O2 -pipe -march=native -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -msse2 -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools/qrc_navigatetool.cxx [ 0%] Linking CXX static library navigatetool.a cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/x86_64-pc-linux-gnu-ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/x86_64-pc-linux-gnu-ranlib navigatetool.a make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Built target navigatetool make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' [ 0%] Generating qrc_pythontool.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/rcc -name pythontool -o /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/qrc_pythontool.cxx /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/libavogadro/src/pythontool.qrc [ 0%] Generating moc_animation.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_animation.cxx_parameters [ 0%] Generating moc_atom.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_atom.cxx_parameters [ 0%] Generating moc_bond.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_bond.cxx_parameters [ 1%] Generating moc_color.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_color.cxx_parameters [ 1%] Generating moc_colorbutton.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_colorbutton.cxx_parameters [ 1%] Generating moc_cube.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_cube.cxx_parameters [ 1%] Generating moc_dockextension.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_dockextension.cxx_parameters [ 1%] Generating moc_dockwidget.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_dockwidget.cxx_parameters [ 1%] Generating moc_elementdetail_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 1%] Generating moc_elementtranslator.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_elementtranslator.cxx_parameters [ 1%] Generating moc_engine.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_engine.cxx_parameters [ 1%] Generating moc_extension.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_extension.cxx_parameters [ 1%] Generating moc_fragment.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_fragment.cxx_parameters [ 2%] Generating moc_glwidget.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_glwidget.cxx_parameters [ 2%] Generating moc_mesh.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_mesh.cxx_parameters [ 2%] Generating moc_meshgenerator.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_meshgenerator.cxx_parameters [ 2%] Generating moc_molecule.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_molecule.cxx_parameters [ 2%] Generating moc_moleculefile.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_moleculefile.cxx_parameters [ 2%] Generating moc_periodictablescene_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 2%] Generating moc_periodictableview.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_periodictableview.cxx_parameters [ 2%] Generating moc_plotwidget.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_plotwidget.cxx_parameters [ 2%] Generating moc_plugin.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_plugin.cxx_parameters [ 3%] Generating moc_pluginmanager.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_pluginmanager.cxx_parameters [ 3%] Generating moc_primitive.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_primitive.cxx_parameters [ 3%] Generating moc_protein.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_protein.cxx_parameters [ 3%] Generating moc_readfilethread_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 3%] Generating moc_residue.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_residue.cxx_parameters [ 3%] Generating moc_textmatrixeditor.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 3%] Generating moc_tool.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_tool.cxx_parameters [ 3%] Generating moc_toolgroup.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_toolgroup.cxx_parameters [ 3%] Generating moc_zmatrix.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_zmatrix.cxx_parameters [ 3%] Generating moc_pythonengine_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 4%] Generating moc_pythonerror.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_pythonerror.cxx_parameters [ 4%] Generating moc_pythonextension_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 4%] Generating moc_pythontool_p.cxx cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/lib64/qt4/bin/moc @/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/moc_pythontool_p.cxx_parameters [ 4%] Generating libavogadro_ar.qm cd /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src && /usr/bin/lconvert -i /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207/i18n/libavogadro/ar.po -o /var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build/libavogadro/src/libavogadro_ar.ts lconvert: could not find a Qt installation of '' make[2]: *** [libavogadro/src/CMakeFiles/avogadro.dir/build.make:237: libavogadro/src/libavogadro_ar.qm] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make[1]: *** [CMakeFiles/Makefile2:151: libavogadro/src/CMakeFiles/avogadro.dir/all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' make: *** [Makefile:152: all] Error 2 * ERROR: sci-chemistry/avogadro-1.2.0_p20170207::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/avogadro-1.2.0_p20170207::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/avogadro-1.2.0_p20170207::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:avogadro-1.2.0_p20170207:20180303-213317.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207_build' * S: '/var/tmp/portage/sci-chemistry/avogadro-1.2.0_p20170207/work/avogadro-1.2.0_p20170207'