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Gentoo's Bugzilla – Attachment 521984 Details for
Bug 649426
sci-libs/xdmf2-1.0_p141226-r2 with sys-cluster/mpich-3.2-r2 - Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") -- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS)
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build.log
build.log (text/plain), 6.31 KB, created by
Juergen Rose
on 2018-03-03 06:50:42 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2018-03-03 06:50:42 UTC
Size:
6.31 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/xdmf2-1.0_p141226-r2 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 doc elibc_glibc kernel_linux python python_targets_python2_7 userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking xdmf2-1.0_p141226.tar.xz to /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work >>>> Source unpacked in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work >>>> Preparing source in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226 ... > [32;01m*[0m Applying xdmf2-1.0_p141226-module.patch ... >[A[161C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying xdmf2-1.0_p141226-cannot-find-hdf5-bug-591302.patch ... >[A[161C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build" >cmake -C /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_SHARED_LIBS=1 -DXDMF_BUILD_DOCUMENTATION=yes -DBUILD_TESTING=no -DXDMF_WRAP_PYTHON=yes -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226 >loading initial cache file /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build/gentoo_common_config.cmake >Re-run cmake no build system arguments >-- The C compiler identification is GNU 7.3.0 >-- The CXX compiler identification is GNU 7.3.0 >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works >-- Detecting C compiler ABI info >-- Detecting C compiler ABI info - done >-- Detecting C compile features >-- Detecting C compile features - done >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works >-- Detecting CXX compiler ABI info >-- Detecting CXX compiler ABI info - done >-- Detecting CXX compile features >-- Detecting CXX compile features - done >-- Found Doxygen: /usr/bin/doxygen (found version "1.8.14") found components: doxygen dot >-- Found DOXYFILE_IN: /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226/doc/Doxyfile.in >-- Found LATEX: /usr/bin/latex >CMake Warning (dev) at CMake/UseDoxygen.cmake:95 (get_target_property): > Policy CMP0045 is not set: Error on non-existent target in > get_target_property. Run "cmake --help-policy CMP0045" for policy details. > Use the cmake_policy command to set the policy and suppress this warning. > > get_target_property() called with non-existent target "doc". >Call Stack (most recent call first): > doc/CMakeLists.txt:1 (include) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Found SWIG: /usr/bin/swig (found version "3.0.12") >-- Found PythonInterp: /var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/temp/python2.7/bin/python (found version "2.7.14") >-- Found PythonLibs: /usr/lib/libpython2.7.so (found version "2.7.14") >-- Found Git: /usr/bin/git (found version "2.16.2") >-- Boost version: 1.65.0 >-- HDF5: Using hdf5 compiler wrapper to determine C configuration >-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.1") >-- Found MPI_C: /usr/lib64/libmpi.so (found version "3.1") >-- Could NOT find MPI_CXX (missing: MPI_CXX_WORKS) >CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:137 (message): > Could NOT find MPI (missing: MPI_CXX_FOUND) (found version "3.1") >Call Stack (most recent call first): > /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE) > /usr/share/cmake/Modules/FindMPI.cmake:1444 (find_package_handle_standard_args) > core/CMakeLists.txt:53 (find_package) > > >CMake Warning (dev) in /usr/share/cmake/Modules/FindMPI.cmake: > Policy CMP0011 is not set: Included scripts do automatic cmake_policy PUSH > and POP. Run "cmake --help-policy CMP0011" for policy details. Use the > cmake_policy command to set the policy and suppress this warning. > > The included script > > /usr/share/cmake/Modules/FindMPI.cmake > > affects policy settings. CMake is implying the NO_POLICY_SCOPE option for > compatibility, so the effects are applied to the including context. >Call Stack (most recent call first): > core/CMakeLists.txt:53 (find_package) >This warning is for project developers. Use -Wno-dev to suppress it. > >-- Configuring incomplete, errors occurred! >See also "/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build/CMakeFiles/CMakeOutput.log". > [31;01m*[0m ERROR: sci-libs/xdmf2-1.0_p141226-r2::gentoo failed (configure phase): > [31;01m*[0m cmake failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 124: Called src_configure > [31;01m*[0m environment, line 3928: Called cmake-utils_src_configure > [31;01m*[0m environment, line 1043: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/xdmf2-1.0_p141226-r2::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/xdmf2-1.0_p141226-r2::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/log/portage/sci-libs:xdmf2-1.0_p141226-r2:20180303-063945.log'. > [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226_build' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/xdmf2-1.0_p141226-r2/work/xdmf2-1.0_p141226'
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bug 649426
: 521984