* Package: sci-physics/root-6.12.04 * Repository: gentoo * Maintainer: amadio@gentoo.org sci-physics@gentoo.org * USE: X abi_x86_64 amd64 asimage elibc_glibc examples fortran gdml gsl kernel_linux ldap math memstat minuit opengl python python_single_target_python3_5 python_targets_python2_7 python_targets_python3_5 roofit ssl tbb threads tiff tmva unuran userland_GNU xml * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran * There are extra options on packages not yet in Gentoo: * Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite, * HDFS, Monalisa, MaxDB/SapDB, SRP, VecCore. * You can use the env variable EXTRA_ECONF variable for this. * For example, for Chirp, you would set: * EXTRA_ECONF="-Dchirp=ON" * Adding group 'rootd' to your system ... * - Groupid: next available * Adding user 'rootd' to your system ... * - Userid: 113 * - Shell: /sbin/nologin * - Home: /var/spool/rootd * - Groups: rootd * - GECOS: added by portage for root * - Creating /var/spool/rootd in / >>> Unpacking source... >>> Unpacking root_v6.12.04.source.tar.gz to /var/tmp/portage/sci-physics/root-6.12.04/work >>> Source unpacked in /var/tmp/portage/sci-physics/root-6.12.04/work >>> Preparing source in /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 ... * Applying root-5.28.00b-glibc212.patch ... [ ok ] * Applying root-5.32.00-afs.patch ... [ ok ] * Applying root-5.32.00-cfitsio.patch ... [ ok ] * Applying root-5.32.00-chklib64.patch ... [ ok ] * Applying root-6.00.01-dotfont.patch ... [ ok ] * Applying root-6.11.02-hsimple.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build" cmake -C /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_C_FLAGS=-O2 -pipe -march=native -Wall -DCMAKE_CXX_FLAGS=-O2 -pipe -march=native -DCMAKE_INSTALL_PREFIX=/opt/root/6.12 -Dexplicitlink=ON -Dexceptions=ON -Dfail-on-missing=ON -Dshared=ON -Dsoversion=ON -Dbuiltin_llvm=ON -Dbuiltin_afterimage=OFF -Dbuiltin_cfitsio=OFF -Dbuiltin_davix=no -Dbuiltin_fftw3=OFF -Dbuiltin_freetype=OFF -Dbuiltin_ftgl=OFF -Dbuiltin_glew=OFF -Dbuiltin_gsl=OFF -Dbuiltin_lzma=OFF -Dbuiltin_pcre=OFF -Dbuiltin_tbb=OFF -Dbuiltin_unuran=OFF -Dbuiltin_vc=OFF -Dbuiltin_xrootd=OFF -Dbuiltin_zlib=OFF -Dx11=yes -Dxft=yes -Dasimage=yes -Dastiff=yes -Dbonjour=no -Dlibcxx=no -Dccache=OFF -Dcastor=OFF -Dchirp=OFF -Dcocoa=no -Dcxx14=no -Ddavix=no -Ddcache=OFF -Dfftw3=no -Dfitsio=no -Dfortran=yes -Dgdml=yes -Dgeocad=OFF -Dgenvector=yes -Dgfal=OFF -Dglite=OFF -Dglobus=OFF -Dgminimal=OFF -Dgnuinstall=OFF -Dgsl_shared=yes -Dgviz=no -Dhdfs=OFF -Dhttp=no -Dimt=yes -Djemalloc=no -Dkrb5=no -Dldap=yes -Dmathmore=yes -Dmemstat=yes -Dminuit=yes -Dminuit2=yes -Dmonalisa=OFF -Dmysql=no -Dodbc=no -Dopengl=yes -Doracle=no -Dpgsql=no -Dpythia6=no -Dpythia8=no -Dpython=yes -Dqt=no -Dqtgsi=no -Droofit=yes -Droot7=no -Droottest=OFF -Druby=OFF -Dr=no -Drfio=OFF -Drpath=no -Dsapdb=OFF -Dshadowpw=no -Dsqlite=no -Dsrp=OFF -Dssl=yes -Dtbb=yes -Dtable=no -Dtcmalloc=OFF -Dtesting=no -Dthread=yes -Dtmva=yes -Dunuran=yes -Dvc=no -Dvdt=OFF -Dxml=yes -Dxrootd=no -DCMAKE_BUILD_TYPE=Release -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/gentoo_toolchain.cmake /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 loading initial cache file /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/gentoo_common_config.cmake -- The C compiler identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The Fortran compiler identification is GNU 7.2.0 -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes -- Found GCC. Major version 7, minor version 2 -- Performing Test HAS_CXX11 -- Performing Test HAS_CXX11 - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found a 64bit system -- Found GNU compiler collection -- Performing Test GLIBCXX_USE_CXX11_ABI -- Performing Test GLIBCXX_USE_CXX11_ABI - Success -- ROOT Platform: linux -- ROOT Architecture: linuxx8664gcc -- Build Type: Release -- Compiler Flags: -O2 -pipe -march=native -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -fPIC -pthread -std=c++11 -O2 -DNDEBUG -- Looking for ZLib -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Looking for Unuran -- Found UNURAN: /usr/lib/libunuran.so -- Looking for Freetype -- Found Freetype: /usr/lib/libfreetype.so (found version "2.8.1") -- Looking for PCRE -- Found PCRE: /usr/include -- Looking for LZMA -- Found LZMA includes at /usr/include -- Found LZMA library at /usr/lib/liblzma.so -- Looking for LZ4 -- LZ4 not found. Switching on builtin_lz4 option -- Building LZ4 version v1.7.5 included in ROOT itself -- Looking for X11 -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/libX11.so -- X11_INCLUDE_DIR: /usr/include -- X11_LIBRARIES: /usr/lib/libSM.so;/usr/lib/libICE.so;/usr/lib/libX11.so;/usr/lib/libXext.so -- X11_Xpm_INCLUDE_PATH: /usr/include -- X11_Xpm_LIB: /usr/lib/libXpm.so -- X11_Xft_INCLUDE_PATH: /usr/include -- X11_Xft_LIB: /usr/lib/libXft.so -- X11_Xext_INCLUDE_PATH: -- X11_Xext_LIB: /usr/lib/libXext.so -- Found GIF: /usr/lib/libgif.so (found version "5.1.4") -- Found TIFF: /usr/lib/libtiff.so (found version "4.0.9") -- Found PNG: /usr/lib/libpng.so (found version "1.6.34+apng") -- Found JPEG: /usr/lib/libjpeg.so -- Looking for AfterImage -- Found AfterImage version 1.21 -- Found AfterImage includedir /usr/include/libAfterImage -- Found AfterImage libraries -L/usr/lib64 -lAfterImage -lAfterBase -lfreetype -lrsvg-2 -lm -lgio-2.0 -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lcairo -ltiff -lX11 -lSM -lICE -lXext -ljpeg -lpng -lz -lm -- Looking for GSL -- Found GSL: /usr/include (found suitable version "2.4", minimum required is "1.10") -- Looking for Python -- Found PythonInterp: /var/tmp/portage/sci-physics/root-6.12.04/temp/python3.5/bin/python (found version "3.5.4") -- Found Python interpreter version 3.5 -- Found PythonLibs: /usr/lib/libpython3.5m.so (found version "3.5.4") -- Found NUMPY: /usr/lib64/python3.5/site-packages/numpy/core/include (found version "1.13.3") -- Looking for OpenGL -- Found OpenGL: /usr/lib/libGL.so -- Looking for gl2ps -- Found GL2PS: /usr/lib/libgl2ps.so -- Looking for LibXml2 -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.7") -- Looking for OpenSSL -- Found OpenSSL: /usr/lib64/libcrypto.so (found version "1.0.2n") -- Found LDAP: /usr/include -- Found FTGL: /usr/include -- Looking for TBB -- Found TBB: /usr (found version "2017.0") -- Looking for BLAS for optional parts of TMVA -- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.29.2") -- Checking for module 'blas' -- No package 'blas' found -- No PkgConfig configuration for BLAS found; starting more extensive search. -- A library with BLAS API not found. Please specify library location. -- Enabled support for: asimage astiff builtin_llvm builtin_lz4 cling cxx11 exceptions explicitlink fortran gdml genvector gsl_shared imt ldap mathmore memstat minuit2 opengl pch python roofit shared soversion ssl thread tmva unuran x11 xft xml -- The ASM compiler identification is GNU -- Found assembler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Looking for backtrace -- Looking for backtrace - found -- backtrace facility detected in default set of libraries -- Found Backtrace: /usr/include -- Native target architecture is X86 -- Threads disabled. -- Doxygen disabled. -- Go bindings enabled. -- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH) -- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH) -- OCaml bindings disabled. -- LLVM host triple: x86_64-unknown-linux-gnu -- LLVM default target triple: x86_64-unknown-linux-gnu -- Building with -fPIC -- Constructing LLVMBuild project information -- Linker detection: GNU ld -- SysLibs: rt;dl;curses;-lpthread;/usr/lib/libz.so -- Targeting X86 -- Could NOT find Z3 (missing: Z3_LIBRARIES Z3_INCLUDE_DIR) (Required is at least version "4.5") -- Clang version: 5.0.0 -- Cling version (from VERSION file): ROOT_0.6~dev -- Cling will look for C++ headers in '/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/include/g++-v7:/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/include/g++-v7/x86_64-pc-linux-gnu:/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/include/g++-v7/backward' at runtime. -- And if not found, will invoke: 'x86_64-pc-linux-gnu-g++' for them. -- Performing Test CXX_HAS_Wno_maybe_uninitialized -- Performing Test CXX_HAS_Wno_maybe_uninitialized - Success -- Performing Test CXX_HAS_fno_rtti -- Performing Test CXX_HAS_fno_rtti - Success -- Performing Test C_HAS_Wno_strict_overflow -- Performing Test C_HAS_Wno_strict_overflow - Success -- Performing Test C_HAS_Wno_maybe_uninitialized -- Performing Test C_HAS_Wno_maybe_uninitialized - Success -- Performing Test C_HAS_Wno_parentheses_equality -- Performing Test C_HAS_Wno_parentheses_equality - Success -- Performing Test CXX_HAS_Wno_deprecated_declarations -- Performing Test CXX_HAS_Wno_deprecated_declarations - Success -- Performing Test CXX_HAS_fno_strict_aliasing -- Performing Test CXX_HAS_fno_strict_aliasing - Success -- Performing Test CXX_HAS_Wno_parentheses_equality -- Performing Test CXX_HAS_Wno_parentheses_equality - Success -- Performing Test found_setresuid -- Performing Test found_setresuid - Success -- Performing Test found_stdstringview -- Performing Test found_stdstringview - Failed -- Performing Test found_stdexpstringview -- Performing Test found_stdexpstringview - Failed -- Performing Test found_stdapply -- Performing Test found_stdapply - Failed -- Performing Test found_stdinvoke -- Performing Test found_stdinvoke - Failed -- Performing Test found_attribute_always_inline -- Performing Test found_attribute_always_inline - Success Running /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04/build/unix/compiledata.sh Making /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/include/compiledata.h -- <<< Gentoo configuration >>> Build type Release Install path /opt/root/6.12 Compiler flags: C -O2 -pipe -march=native -Wall -Wno-implicit-fallthrough -pipe -m64 -Wall -W -fPIC -pthread C++ -O2 -pipe -march=native -Wno-implicit-fallthrough -Wno-noexcept-type -pipe -m64 -Wshadow -Wall -W -Woverloaded-virtual -fsigned-char -fPIC -pthread -std=c++11 Linker flags: Executable -Wl,-O1 -Wl,--as-needed -rdynamic Module -Wl,-O1 -Wl,--as-needed Shared -Wl,-O1 -Wl,--as-needed -Wl,--no-undefined -- Configuring done -- Generating done -- Build files have been written to: /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build" make -j1 VERBOSE=1 /usr/bin/cmake -H/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 -B/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' make -f CMakeFiles/LZ4.dir/build.make CMakeFiles/LZ4.dir/depend make[2]: Entering directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' cd /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04 /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/LZ4.dir/DependInfo.cmake Dependee "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/LZ4.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/LZ4.dir/depend.internal". Dependee "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/CMakeFiles/LZ4.dir/depend.internal". Scanning dependencies of target LZ4 make[2]: Leaving directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' make -f CMakeFiles/LZ4.dir/build.make CMakeFiles/LZ4.dir/build make[2]: Entering directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' [ 0%] Creating directories for 'LZ4' /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4 /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4 /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/tmp /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4-stamp/. /usr/bin/cmake -E make_directory /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src /usr/bin/cmake -E touch /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4-stamp/./LZ4-mkdir [ 0%] Performing download step (download, verify and extract) for 'LZ4' cd /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src && /usr/bin/cmake -P /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4-stamp/LZ4-download-Release.cmake CMake Error at LZ4-stamp/LZ4-download-Release.cmake:16 (message): Command failed: 1 '/usr/bin/cmake' '-Dmake=' '-Dconfig=' '-P' '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4-stamp/LZ4-download-Release-impl.cmake' See also /var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build/LZ4-prefix/src/LZ4-stamp/LZ4-download-*.log make[2]: *** [CMakeFiles/LZ4.dir/build.make:90: LZ4-prefix/src/LZ4-stamp/LZ4-download] Error 1 make[2]: Leaving directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' make[1]: *** [CMakeFiles/Makefile2:68: CMakeFiles/LZ4.dir/all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' make: *** [Makefile:152: all] Error 2 * ERROR: sci-physics/root-6.12.04::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-physics/root-6.12.04::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-physics/root-6.12.04::gentoo'`. * The complete build log is located at '/var/log/portage/sci-physics:root-6.12.04:20171218-062302.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/root-6.12.04/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-physics/root-6.12.04/temp/environment'. * Working directory: '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04_build' * S: '/var/tmp/portage/sci-physics/root-6.12.04/work/root-6.12.04'