sci-biology:arb-6.0.6:20171118-202025.log

sci-biology:arb-6.0.6:20171118-202025.log (text/plain), 40.00 KB, created by Toralf Förster on 2017-11-18 20:37:31 UTC

 * Package:    sci-biology/arb-6.0.6
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux opengl userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking arb-6.0.6.tgz to /var/tmp/portage/sci-biology/arb-6.0.6/work
>>> Source unpacked in /var/tmp/portage/sci-biology/arb-6.0.6/work
>>> Preparing source in /var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6 ...
 * Applying arb-6.0.6-glapi.patch ...
 [ ok ]
 * Applying arb-6.0.6-tc-flags.patch ...
 [ ok ]
 * Applying arb-6.0.6-arb_install.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6 ...
make -j1 ARBHOME=/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6 PATH=/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin:/usr/lib/portage/python3.4/ebuild-helpers/xattr:/usr/lib/portage/python3.4/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/6.4.0:/usr/lib/llvm/5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin LD_LIBRARY_PATH=/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/lib: CC=x86_64-pc-linux-gnu-gcc CXX=x86_64-pc-linux-gnu-g++ build 
make -r -C "lib/motifHack" all
make[1]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/lib/motifHack'
./convert_xpm.pl pixmaps/less.xpm < ../pixmaps/less.xpm 
Creating directory 'pixmaps'
./convert_xpm.pl pixmaps/mode_length.xpm < ../pixmaps/mode_length.xpm 
./convert_xpm.pl pixmaps/mode_lzoom.xpm < ../pixmaps/mode_lzoom.xpm 
./convert_xpm.pl pixmaps/moveUp.xpm < ../pixmaps/moveUp.xpm 
./convert_xpm.pl pixmaps/listdisp.xpm < ../pixmaps/listdisp.xpm 
./convert_xpm.pl pixmaps/rightleft_small.xpm < ../pixmaps/rightleft_small.xpm 
./convert_xpm.pl pixmaps/refresh_text.xpm < ../pixmaps/refresh_text.xpm 
./convert_xpm.pl pixmaps/gen_radial.xpm < ../pixmaps/gen_radial.xpm 
./convert_xpm.pl pixmaps/helpText.xpm < ../pixmaps/helpText.xpm 
./convert_xpm.pl pixmaps/moveAllLeft.xpm < ../pixmaps/moveAllLeft.xpm 
./convert_xpm.pl pixmaps/mode_cursor.xpm < ../pixmaps/mode_cursor.xpm 
./convert_xpm.pl pixmaps/save.xpm < ../pixmaps/save.xpm 
./convert_xpm.pl pixmaps/mode_kernlin.xpm < ../pixmaps/mode_kernlin.xpm 
./convert_xpm.pl pixmaps/mode_fold.xpm < ../pixmaps/mode_fold.xpm 
./convert_xpm.pl pixmaps/unmask.xpm < ../pixmaps/unmask.xpm 
./convert_xpm.pl pixmaps/mode_group.xpm < ../pixmaps/mode_group.xpm 
./convert_xpm.pl pixmaps/undo.xpm < ../pixmaps/undo.xpm 
./convert_xpm.pl pixmaps/conf_save.xpm < ../pixmaps/conf_save.xpm 
./convert_xpm.pl pixmaps/help_text.xpm < ../pixmaps/help_text.xpm 
./convert_xpm.pl pixmaps/mode_setroot.xpm < ../pixmaps/mode_setroot.xpm 
./convert_xpm.pl pixmaps/mode_rotate.xpm < ../pixmaps/mode_rotate.xpm 
./convert_xpm.pl pixmaps/no.xpm < ../pixmaps/no.xpm 
./convert_xpm.pl pixmaps/mode_edit.xpm < ../pixmaps/mode_edit.xpm 
./convert_xpm.pl pixmaps/moveDown.xpm < ../pixmaps/moveDown.xpm 
./convert_xpm.pl pixmaps/mode_pinfo.xpm < ../pixmaps/mode_pinfo.xpm 
./convert_xpm.pl pixmaps/mode_mark.xpm < ../pixmaps/mode_mark.xpm 
./convert_xpm.pl pixmaps/colors.xpm < ../pixmaps/colors.xpm 
./convert_xpm.pl pixmaps/equal.xpm < ../pixmaps/equal.xpm 
./convert_xpm.pl pixmaps/beautifyt.xpm < ../pixmaps/beautifyt.xpm 
./convert_xpm.pl pixmaps/yes.xpm < ../pixmaps/yes.xpm 
./convert_xpm.pl pixmaps/radial.xpm < ../pixmaps/radial.xpm 
./convert_xpm.pl pixmaps/moveBottom.xpm < ../pixmaps/moveBottom.xpm 
./convert_xpm.pl pixmaps/gen_book.xpm < ../pixmaps/gen_book.xpm 
./convert_xpm.pl pixmaps/leftright_small.xpm < ../pixmaps/leftright_small.xpm 
./convert_xpm.pl pixmaps/molText.xpm < ../pixmaps/molText.xpm 
./convert_xpm.pl pixmaps/moveTop.xpm < ../pixmaps/moveTop.xpm 
./convert_xpm.pl pixmaps/bases.xpm < ../pixmaps/bases.xpm 
./convert_xpm.pl pixmaps/mode_empty.xpm < ../pixmaps/mode_empty.xpm 
./convert_xpm.pl pixmaps/mode_line.xpm < ../pixmaps/mode_line.xpm 
./convert_xpm.pl pixmaps/gen_map.xpm < ../pixmaps/gen_map.xpm 
./convert_xpm.pl pixmaps/saveAs.xpm < ../pixmaps/saveAs.xpm 
./convert_xpm.pl pixmaps/mode_swap.xpm < ../pixmaps/mode_swap.xpm 
./convert_xpm.pl pixmaps/mode_spread.xpm < ../pixmaps/mode_spread.xpm 
./convert_xpm.pl pixmaps/mode_multifurc.xpm < ../pixmaps/mode_multifurc.xpm 
./convert_xpm.pl pixmaps/mode_www.xpm < ../pixmaps/mode_www.xpm 
./convert_xpm.pl pixmaps/diamond.xpm < ../pixmaps/diamond.xpm 
./convert_xpm.pl pixmaps/mode_info.xpm < ../pixmaps/mode_info.xpm 
./convert_xpm.pl pixmaps/quit.xpm < ../pixmaps/quit.xpm 
./convert_xpm.pl pixmaps/mode_nni.xpm < ../pixmaps/mode_nni.xpm 
./convert_xpm.pl pixmaps/colorMaps.xpm < ../pixmaps/colorMaps.xpm 
./convert_xpm.pl pixmaps/mapping.xpm < ../pixmaps/mapping.xpm 
./convert_xpm.pl pixmaps/close_text.xpm < ../pixmaps/close_text.xpm 
./convert_xpm.pl pixmaps/closeText.xpm < ../pixmaps/closeText.xpm 
./convert_xpm.pl pixmaps/mode_stretch.xpm < ../pixmaps/mode_stretch.xpm 
./convert_xpm.pl pixmaps/logo.xpm < ../pixmaps/logo.xpm 
./convert_xpm.pl pixmaps/helix.xpm < ../pixmaps/helix.xpm 
./convert_xpm.pl pixmaps/dendroIrs.xpm < ../pixmaps/dendroIrs.xpm 
./convert_xpm.pl pixmaps/mode_select.xpm < ../pixmaps/mode_select.xpm 
./convert_xpm.pl pixmaps/gen_vertical.xpm < ../pixmaps/gen_vertical.xpm 
./convert_xpm.pl pixmaps/moveLeft.xpm < ../pixmaps/moveLeft.xpm 
./convert_xpm.pl pixmaps/mode_optimize.xpm < ../pixmaps/mode_optimize.xpm 
./convert_xpm.pl pixmaps/beautifyb.xpm < ../pixmaps/beautifyb.xpm 
./convert_xpm.pl pixmaps/star.xpm < ../pixmaps/star.xpm 
./convert_xpm.pl pixmaps/polygon.xpm < ../pixmaps/polygon.xpm 
./convert_xpm.pl pixmaps/circle.xpm < ../pixmaps/circle.xpm 
./convert_xpm.pl pixmaps/uncheck.xpm < ../pixmaps/uncheck.xpm 
./convert_xpm.pl pixmaps/mask.xpm < ../pixmaps/mask.xpm 
./convert_xpm.pl pixmaps/moveRight.xpm < ../pixmaps/moveRight.xpm 
./convert_xpm.pl pixmaps/mode_move.xpm < ../pixmaps/mode_move.xpm 
./convert_xpm.pl pixmaps/redo.xpm < ../pixmaps/redo.xpm 
./convert_xpm.pl pixmaps/mode_zoom.xpm < ../pixmaps/mode_zoom.xpm 
./convert_xpm.pl pixmaps/close.xpm < ../pixmaps/close.xpm 
./convert_xpm.pl pixmaps/help.xpm < ../pixmaps/help.xpm 
./convert_xpm.pl pixmaps/helixText.xpm < ../pixmaps/helixText.xpm 
./convert_xpm.pl pixmaps/protect.xpm < ../pixmaps/protect.xpm 
./convert_xpm.pl pixmaps/notEqual.xpm < ../pixmaps/notEqual.xpm 
./convert_xpm.pl pixmaps/rectangle.xpm < ../pixmaps/rectangle.xpm 
./convert_xpm.pl pixmaps/beautifyc.xpm < ../pixmaps/beautifyc.xpm 
./convert_xpm.pl pixmaps/editor.xpm < ../pixmaps/editor.xpm 
./convert_xpm.pl pixmaps/refresh.xpm < ../pixmaps/refresh.xpm 
./convert_xpm.pl pixmaps/dendro.xpm < ../pixmaps/dendro.xpm 
./convert_xpm.pl pixmaps/basesText.xpm < ../pixmaps/basesText.xpm 
./convert_xpm.pl pixmaps/more.xpm < ../pixmaps/more.xpm 
./convert_xpm.pl pixmaps/check.xpm < ../pixmaps/check.xpm 
./convert_xpm.pl pixmaps/moveAllRight.xpm < ../pixmaps/moveAllRight.xpm 
./convert_xpm.pl pixmaps/print/handles.xpm < ../pixmaps/print/handles.xpm 
Creating directory 'pixmaps/print'
./convert_xpm.pl pixmaps/print/clipall.xpm < ../pixmaps/print/clipall.xpm 
./convert_xpm.pl pixmaps/print/clipscreen.xpm < ../pixmaps/print/clipscreen.xpm 
./convert_xpm.pl pixmaps/print/nohandles.xpm < ../pixmaps/print/nohandles.xpm 
./convert_xpm.pl pixmaps/print/landscape.xpm < ../pixmaps/print/landscape.xpm 
./convert_xpm.pl pixmaps/print/portrait.xpm < ../pixmaps/print/portrait.xpm 
./convert_xpm.pl pixmaps/merge/icon.xpm < ../pixmaps/merge/icon.xpm 
Creating directory 'pixmaps/merge'
./convert_xpm.pl pixmaps/edit/rna3d.xpm < ../pixmaps/edit/rna3d.xpm 
Creating directory 'pixmaps/edit'
./convert_xpm.pl pixmaps/edit/last.xpm < ../pixmaps/edit/last.xpm 
./convert_xpm.pl pixmaps/edit/zoom.xpm < ../pixmaps/edit/zoom.xpm 
./convert_xpm.pl pixmaps/edit/repeat.xpm < ../pixmaps/edit/repeat.xpm 
./convert_xpm.pl pixmaps/edit/align.xpm < ../pixmaps/edit/align.xpm 
./convert_xpm.pl pixmaps/edit/3to5.xpm < ../pixmaps/edit/3to5.xpm 
./convert_xpm.pl pixmaps/edit/cons.xpm < ../pixmaps/edit/cons.xpm 
./convert_xpm.pl pixmaps/edit/nocons.xpm < ../pixmaps/edit/nocons.xpm 
./convert_xpm.pl pixmaps/edit/5to3.xpm < ../pixmaps/edit/5to3.xpm 
./convert_xpm.pl pixmaps/edit/mark.xpm < ../pixmaps/edit/mark.xpm 
./convert_xpm.pl pixmaps/edit/clear.xpm < ../pixmaps/edit/clear.xpm 
./convert_xpm.pl pixmaps/edit/arrow.xpm < ../pixmaps/edit/arrow.xpm 
./convert_xpm.pl pixmaps/edit/secedit.xpm < ../pixmaps/edit/secedit.xpm 
./convert_xpm.pl pixmaps/edit/next.xpm < ../pixmaps/edit/next.xpm 
./convert_xpm.pl pixmaps/edit/norepeat.xpm < ../pixmaps/edit/norepeat.xpm 
./convert_xpm.pl pixmaps/edit/kill.xpm < ../pixmaps/edit/kill.xpm 
./convert_xpm.pl pixmaps/edit/detail.xpm < ../pixmaps/edit/detail.xpm 
./convert_xpm.pl pixmaps/edit/keymap.xpm < ../pixmaps/edit/keymap.xpm 
./convert_xpm.pl pixmaps/edit/editseq.xpm < ../pixmaps/edit/editseq.xpm 
./convert_xpm.pl pixmaps/edit/nokeymap.xpm < ../pixmaps/edit/nokeymap.xpm 
./convert_xpm.pl pixmaps/icons/ARB_PARS.xpm < ../pixmaps/icons/ARB_PARS.xpm 
Creating directory 'pixmaps/icons'
./convert_xpm.pl pixmaps/icons/ARB_STATUS.xpm < ../pixmaps/icons/ARB_STATUS.xpm 
./convert_xpm.pl pixmaps/icons/ARB_EDIT4.xpm < ../pixmaps/icons/ARB_EDIT4.xpm 
./convert_xpm.pl pixmaps/icons/ARB_DIST.xpm < ../pixmaps/icons/ARB_DIST.xpm 
./convert_xpm.pl pixmaps/icons/ARB_NT.xpm < ../pixmaps/icons/ARB_NT.xpm 
./convert_xpm.pl pixmaps/icons/ARB_PHYLO.xpm < ../pixmaps/icons/ARB_PHYLO.xpm 
./convert_xpm.pl pixmaps/icons/ARB_WETC.xpm < ../pixmaps/icons/ARB_WETC.xpm 
make[1]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/lib/motifHack'
make "WITHPERL=1" perl arb_no_perl
make[1]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
All tools needed for ARB compilation have been located.
-------------------- Environment [start]
ARBHOME='/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
PATH='/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin:/usr/lib/portage/python3.4/ebuild-helpers/xattr:/usr/lib/portage/python3.4/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/6.4.0:/usr/lib/llvm/5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin'
LD_LIBRARY_PATH='/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/lib:'
-------------------- Environment [end]
Compiler version check:
  - Supported gcc version '6.4.0' detected - fine!

make check_same_GCC_VERSION
make[2]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/SOURCE_TOOLS/check_same_compiler_version.pl gcc 6.4.0
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
Your setup seems to be ok.
SOURCE_TOOLS/generate_all_links.sh
make[2]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin'
find . -type l -exec rm {} \;
make scriptlinks mafftlinks
make[3]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin'
ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
ln -s -f mafft mafft-einsi
ln -s -f mafft mafft-fftns
ln -s -f mafft mafft-fftnsi
ln -s -f mafft mafft-ginsi
ln -s -f mafft mafft-linsi
ln -s -f mafft mafft-nwns
ln -s -f mafft mafft-nwnsi
ln -s -f mafft mafft-qinsi
ln -s -f mafft mafft-xinsi
make[3]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin'
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/bin'
generate_all_links.sh done.
touch SOURCE_TOOLS/stamp.generate_all_links
make -C SOURCE_TOOLS -r mainwrapper
make[2]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/SOURCE_TOOLS'
x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_main.cxx -o arb_main_cpp.o -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -c arb_main.c -o arb_main_c.o -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/SOURCE_TOOLS'
[20:37.625719339] ------------------------------------------------ Make CORE
make[2]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/CORE'
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_misc.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_strarray.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_diff.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_match.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_sort.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_file.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c FileContent.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_strbuf.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c MultiFileReader.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_msg.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_cs.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_signal.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c pos_range.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_string.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c BufferedFileReader.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_handlers.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_CORE  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arb_progress.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed   -rdynamic -Wl,--export-dynamic -shared  -o ../lib/libCORE.so arb_misc.o arb_strarray.o arb_diff.o arb_match.o arb_sort.o arb_file.o FileContent.o arb_strbuf.o MultiFileReader.o arb_msg.o arb_cs.o arb_signal.o pos_range.o arb_string.o BufferedFileReader.o arb_handlers.o arb_progress.o
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/CORE'
[20:44.244562890] ------------------------------------------------ Make CORE [done]
[20:44.263536695] ------------------------------------------------ Make ARBDB
make[2]: Entering directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/ARBDB'
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adTest.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c ad_load.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c ad_save_load.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adcomm.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adhash.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adcache.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adhashtools.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adlang1.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adlink.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c admalloc.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c admatch.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c admath.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adoptimize.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adperl.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adstring.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
adstring.cxx:828:14: warning: 'char* GBS_fread_string(FILE*)' defined but not used [-Wunused-function]
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adfile.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adsystem.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adtcp.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c adtune.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
x86_64-pc-linux-gnu-g++  -fPIC -O2 -pipe -march=native -Wall -O2 -pipe -march=native -Wall  -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX     -pipe -fmessage-length=0 -fshow-column -funit-at-a-time -fPIC -fno-common -fstrict-aliasing -fno-diagnostics-show-caret -DARB_OPENGL  -rdynamic -W -Wall -DNDEBUG -DARB_64  -DLINUX    -DIN_ARB_ARBDB  -Werror=terminate -O2 -pipe -march=native -std=gnu++11 -c arbdb.cxx -I. -I/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/INCLUDE -I/usr/X11R6/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include 
arbdb.cxx:15:23: fatal error: rpc/types.h: No such file or directory
compilation terminated.
make[2]: *** [Makefile:74: arbdb.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6/ARBDB'
make[1]: *** [Makefile:1271: ARBDB/libARBDB.dummy] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
make: *** [Makefile:1976: arb] Error 2
 * ERROR: sci-biology/arb-6.0.6::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/arb-6.0.6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/arb-6.0.6::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:arb-6.0.6:20171118-202025.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/arb-6.0.6/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/arb-6.0.6/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'
 * S: '/var/tmp/portage/sci-biology/arb-6.0.6/work/arb-6.0.6'