build.log

build-espresso.txt (text/plain), 5.97 KB, created by deference on 2017-10-19 02:14:30 UTC

[32;01m * [39;49;00mPackage:    sci-physics/espresso-4.0_pre20170228
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 doc elibc_glibc examples fftw hdf5 kernel_linux python_single_target_python3_4 python_targets_python2_7 python_targets_python3_4 savedconfig userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Source unpacked in /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work
>>> Preparing source in /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228 ...
 [32;01m*[0m Applying 1056.patch ...
[A[162C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build"
cmake -C /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DWITH_CUDA=no -DPYTHON_EXECUTABLE=/usr/bin/python3.4 -DWITH_TESTS=no -DWITH_SCAFACOS=ON -DINSTALL_PYPRESSO=OFF -DCMAKE_DISABLE_FIND_PACKAGE_FFTW3=no -DCMAKE_DISABLE_FIND_PACKAGE_HDF5=no -DCMAKE_SKIP_RPATH=YES -DLIBDIR=lib64 -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228
loading initial cache file /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Config file: /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228/src/core/myconfig-default.hpp
-- Performing Test result__PRETTY_FUNCTION__
-- Performing Test result__PRETTY_FUNCTION__ - Success
-- Found PythonInterp: /usr/bin/python3.4 (found version "3.4.5") 
-- Found Cython version 0.25
-- Found Cython: /usr/bin/cython (Required is at least version "0.23") 
-- Found NumPy: /usr/lib64/python3.4/site-packages/numpy/core/include (found version "1.10.4") 
-- NumPy ver. 1.10.4 found (include: /usr/lib64/python3.4/site-packages/numpy/core/include)
-- Found FFTW3: /usr/lib64/libfftw3.so  
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found suitable version "1.8.18", minimum required is "1.8") found components:  C 
 [31;01m*[0m [31;01mACCESS DENIED[0m:  open_wr:      /proc/mtrr
-- Could NOT find PY_h5py (missing:  PY_H5PY) 
-- Found Git: /usr/bin/git (found version "2.13.6") 
fatal: Not a git repository (or any parent up to mount point /var)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.28") 
-- Checking for module 'scafacos'
--   No package 'scafacos' found
-- Boost version: 1.62.0
-- Found the following Boost libraries:
--   mpi
--   serialization
--   filesystem
--   system
-- Found MPI_C: /usr/lib64/libmpi.so  
-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so  
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") 
-- Found Sphinx: /usr/bin/sphinx-build (found suitable version "1.6.3", minimum required is "1.5.2") 
-- writing /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build/myconfig-sample.hpp
-- 
-- The following features have been enabled:

 * HDF5 (required version >= 1.8) , parallel

-- The following OPTIONAL packages have been found:

 * PythonInterp
 * FFTW3
 * HDF5 (required version >= 1.8) , parallel
 * Git
 * PkgConfig
 * Doxygen
 * Sphinx (required version >= 1.5.2)

-- The following REQUIRED packages have been found:

 * Cython (required version >= 0.23)
 * NumPy
 * Boost
 * MPI

-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -pipe -O2 -march=amdfam10 -mtune=amdfam10
C++             -pipe -O2 -march=amdfam10 -mtune=amdfam10 -std=c++11 
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed  -Wl,-rpath  -Wl,/usr/lib64  -Wl,--enable-new-dtags
Module          -Wl,-O1 -Wl,--as-needed
Shared          -Wl,-O1 -Wl,--as-needed -Wl,--no-as-needed

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-physics/espresso-4.0_pre20170228/work/espresso-4.0_pre20170228_build
>>> Source configured.
 [31;01m*[0m --------------------------- ACCESS VIOLATION SUMMARY ---------------------------
 [31;01m*[0m LOG FILE: "/var/log/sandbox/sandbox-17662.log"
 [31;01m*[0m 
VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: open_wr
S: deny
P: /proc/mtrr
A: /proc/mtrr
R: /proc/mtrr
C: orted --hnp --set-sid --report-uri 9 --singleton-died-pipe 10 -mca state_novm_select 1 
 [31;01m*[0m --------------------------------------------------------------------------------