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Gentoo's Bugzilla – Attachment 495766 Details for
Bug 631620
dev-lang/R-3.4.1 : running code in reg-tests-3.R make[3]: *** [Makefile.common:100: reg-tests-3.Rout] Error 1
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dev-lang:R-3.4.1:20170921-081454.log
dev-lang:R-3.4.1:20170921-081454.log (text/plain), 351.01 KB, created by
Toralf Förster
on 2017-09-21 08:55:15 UTC
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hide
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Description:
dev-lang:R-3.4.1:20170921-081454.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2017-09-21 08:55:15 UTC
Size:
351.01 KB
patch
obsolete
> * Package: dev-lang/R-3.4.1 > * Repository: gentoo > * Maintainer: sci-mathematics@gentoo.org > * USE: X abi_x86_64 amd64 cairo elibc_glibc icu jpeg kernel_linux nls openmp png readline tiff userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran > * x86_64-pc-linux-gnu-gfortran has OPENMP support >>>> Unpacking source... >>>> Unpacking R-3.4.1.tar.gz to /var/tmp/portage/dev-lang/R-3.4.1/work >>>> Unpacking R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion to /var/tmp/portage/dev-lang/R-3.4.1/work >unpack R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/dev-lang/R-3.4.1/work >>>> Preparing source in /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1 ... > * Applying R-3.4.1-parallel.patch ... > [ ok ] > * Applying R-3.4.1-rmath-shared.patch ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1 ... > * econf: updating R-3.4.1/tools/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating R-3.4.1/tools/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --docdir=/usr/share/doc/R-3.4.1 --htmldir=/usr/share/doc/R-3.4.1/html --libdir=/usr/lib64 --enable-byte-compiled-packages --enable-R-shlib --disable-R-framework --with-blas=-lblas --docdir=/usr/share/doc/R-3.4.1 rdocdir=/usr/share/doc/R-3.4.1 --disable-java --enable-nls --enable-openmp --disable-R-profiling --disable-memory-profiling --disable-static --disable-R-static-lib --with-cairo --with-ICU --with-jpeglib --without-lapack --with-recommended-packages --with-libpng --with-readline --with-libtiff --without-tcltk --without-tk-config --without-tcl-config --with-x >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >loading site script './config.site' >loading build-specific script './config.site' >checking for pwd... /bin/pwd >checking whether builddir is srcdir... yes >checking for working aclocal... found >checking for working autoconf... found >checking for working automake... found >checking for working autoheader... found >checking whether ln -s works... yes >checking for bison... bison -y >checking for ar... ar >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking for sed... /bin/sed >checking for which... /usr/bin/which >checking for /usr/bin/less... /usr/bin/less >checking for gtar... no >checking for gnutar... no >checking for tar... /bin/tar >checking for tex... /usr/bin/tex >checking for pdftex... /usr/bin/pdftex >checking for pdflatex... /usr/bin/pdflatex >checking for makeindex... /usr/bin/makeindex >checking for texi2any... /usr/bin/texi2any >checking whether texi2any version is at least 5.1... yes >checking for ginstall-info... no >checking for install-info... /usr/bin/install-info >checking for texi2dvi... /usr/bin/texi2dvi >checking for kpsewhich... /usr/bin/kpsewhich >checking for latex inconsolata package... missing >configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally >checking for unzip... /usr/bin/unzip >checking for zip... /usr/bin/zip >checking for gzip... /bin/gzip >checking for bzip2... /bin/bzip2 >using default browser ... /usr/bin/xdg-open >checking for /usr/bin/xdg-open... /usr/bin/xdg-open >checking for notangle... false >checking for realpath... /usr/bin/realpath >checking for pkg-config... /usr/bin/pkg-config >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking whether x86_64-pc-linux-gnu-gcc needs -traditional... no >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >defining F77 to be x86_64-pc-linux-gnu-gfortran >checking for x86_64-pc-linux-gnu-g77... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking whether x86_64-pc-linux-gnu-g++ -Werror=terminate -O2 -pipe -march=native can compile C++ code... yes >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking whether __attribute__((visibility())) is supported... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -fvisibility... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -fvisibility... yes >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU Objective C compiler... no >checking whether x86_64-pc-linux-gnu-gcc accepts -g... no >checking for Objective C++ compiler... trying some possibilities >checking whether x86_64-pc-linux-gnu-g++ can compile ObjC++... no >no working ObjC++ compiler found >checking how to print strings... printf >checking for a sed that does not truncate output... (cached) /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking for gawk... gawk >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for cos in -lm... yes >checking for sin in -lm... yes >checking for dlopen in -ldl... yes >checking readline/history.h usability... yes >checking readline/history.h presence... yes >checking for readline/history.h... yes >checking readline/readline.h usability... yes >checking readline/readline.h presence... yes >checking for readline/readline.h... yes >checking for rl_callback_read_char in -lreadline... yes >checking for history_truncate_file... yes >checking whether rl_callback_sigcleanup exists and is declared... yes >checking whether rl_completion_matches exists and is declared... yes >checking whether rl_resize_terminal exists and is declared... yes >checking whether rl_sort_completion_matches exists and is declared... yes >checking for ANSI C header files... (cached) yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for sys/wait.h that is POSIX.1 compatible... yes >checking for dlfcn.h... (cached) yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking glob.h usability... yes >checking glob.h presence... yes >checking for glob.h... yes >checking grp.h usability... yes >checking grp.h presence... yes >checking for grp.h... yes >checking pwd.h usability... yes >checking pwd.h presence... yes >checking for pwd.h... yes >checking sched.h usability... yes >checking sched.h presence... yes >checking for sched.h... yes >checking for strings.h... (cached) yes >checking sys/resource.h usability... yes >checking sys/resource.h presence... yes >checking for sys/resource.h... yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking for sys/stat.h... (cached) yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking sys/times.h usability... yes >checking sys/times.h presence... yes >checking for sys/times.h... yes >checking sys/utsname.h usability... yes >checking sys/utsname.h presence... yes >checking for sys/utsname.h... yes >checking for unistd.h... (cached) yes >checking utime.h usability... yes >checking utime.h presence... yes >checking for utime.h... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking dl.h usability... no >checking dl.h presence... no >checking for dl.h... no >checking elf.h usability... yes >checking elf.h presence... yes >checking for elf.h... yes >checking features.h usability... yes >checking features.h presence... yes >checking for features.h... yes >checking floatingpoint.h usability... no >checking floatingpoint.h presence... no >checking for floatingpoint.h... no >checking langinfo.h usability... yes >checking langinfo.h presence... yes >checking for langinfo.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking sys/param.h usability... yes >checking sys/param.h presence... yes >checking for sys/param.h... yes >checking stdalign.h usability... yes >checking stdalign.h presence... yes >checking for stdalign.h... yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking for inttypes.h... (cached) yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking stdbool.h usability... yes >checking stdbool.h presence... yes >checking for stdbool.h... yes >checking for stdint.h... (cached) yes >checking for string.h... (cached) yes >checking whether setjmp.h is POSIX.1 compatible... yes >checking whether sigsetjmp is declared... yes >checking whether siglongjmp is declared... yes >checking for GNU C library with version >= 2... yes >checking return type of signal handlers... void >checking for uint64_t... yes >checking for int64_t... yes >checking for int_fast64_t... yes >checking for pid_t... yes >checking for size_t... yes >checking whether SIZE_MAX is declared... yes >checking for blkcnt_t... yes >checking for type of socket length... socklen_t * >checking for stack_t... yes >checking for intptr_t... yes >checking for uintptr_t... yes >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... none needed >checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed >checking for inline... inline >checking size of int... 4 >checking size of long... 8 >checking size of long long... 8 >checking size of double... 8 >checking size of size_t... 8 >checking size of long double... 16 >checking whether we can compute C Make dependencies... yes, using $(CC) -MM >checking whether x86_64-pc-linux-gnu-gcc supports -c -o FILE.lo... yes >checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lgfortran -lm -lquadmath >checking how to get verbose linking output from x86_64-pc-linux-gnu-gcc... -v >checking for C libraries of x86_64-pc-linux-gnu-gcc... -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lgcc_s >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking whether x86_64-pc-linux-gnu-gfortran appends underscores to external names... yes >checking whether x86_64-pc-linux-gnu-gfortran appends extra underscores to external names... no >checking whether mixed C/Fortran code can be run... yes >checking whether x86_64-pc-linux-gnu-gfortran and x86_64-pc-linux-gnu-gcc agree on int and double... yes >checking whether x86_64-pc-linux-gnu-gfortran and x86_64-pc-linux-gnu-gcc agree on double complex... yes >checking for x86_64-pc-linux-gnu-gfortran option to support OpenMP... -fopenmp >checking whether x86_64-pc-linux-gnu-g++ accepts -M for generating dependencies... yes >checking for x86_64-pc-linux-gnu-g++ option to support OpenMP... -fopenmp >checking whether we can compute ObjC Make dependencies... no >checking for ObjC runtime library... >checking whether x86_64-pc-linux-gnu-gcc accepts -fobjc-exceptions... no >checking whether C runtime needs -D__NO_MATH_INLINES... no >checking for xmkmf... /usr/bin/xmkmf >checking whether x86_64-pc-linux-gnu-g++ supports C++98 features by default... no >checking whether x86_64-pc-linux-gnu-g++ supports C++98 features with -std=gnu++98... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++11 features by default... no >checking whether x86_64-pc-linux-gnu-g++ supports C++11 features with -std=gnu++11... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features by default... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++17 features by default... no >checking whether x86_64-pc-linux-gnu-g++ supports C++17 features with -std=gnu++17... no >checking whether x86_64-pc-linux-gnu-g++ supports C++17 features with -std=gnu++1z... no >checking whether x86_64-pc-linux-gnu-g++ supports C++17 features with -std=c++17... no >checking whether x86_64-pc-linux-gnu-g++ supports C++17 features with -std=c++1z... no >configure: No compiler with C++17 support was found >checking for off_t... yes >checking for working alloca.h... yes >checking for alloca... yes >checking whether alloca is declared... yes >checking whether expm1 exists and is declared... yes >checking whether hypot exists and is declared... yes >checking whether log1p exists and is declared... yes >checking whether log1pl exists and is declared... yes >checking whether log2 exists and is declared... yes >checking whether log10 exists and is declared... yes >checking whether nearbyint exists and is declared... yes >checking whether nearbyintl exists and is declared... yes >checking whether powl exists and is declared... yes >checking whether rint exists and is declared... yes >checking whether rintl exists and is declared... yes >checking whether va_copy exists and is declared... yes >checking for isblank... yes >checking sunmath.h usability... no >checking sunmath.h presence... no >checking for sunmath.h... no >checking for cospi in -lsunmath... no >checking for atanpi... no >checking for atan2pi... no >checking for cospi... no >checking for exp10... yes >checking for pown... no >checking for sinpi... no >checking for tanpi... no >checking for __cospi... no >checking for __sinpi... no >checking for __tanpi... no >checking for fseeko... yes >checking for ftello... yes >checking for matherr... yes >checking whether fcntl exists and is declared... yes >checking whether getgrgid exists and is declared... yes >checking whether getpwuid exists and is declared... yes >checking whether kill exists and is declared... yes >checking whether sigaction exists and is declared... yes >checking whether sigaltstack exists and is declared... yes >checking whether sigemptyset exists and is declared... yes >checking whether fdopen exists and is declared... yes >checking whether popen exists and is declared... yes >checking whether getline exists and is declared... yes >checking whether select exists and is declared... yes >checking whether setenv exists and is declared... yes >checking whether unsetenv exists and is declared... yes >checking whether getrlimit exists and is declared... yes >checking whether getrusage exists and is declared... yes >checking whether getpriority exists and is declared... yes >checking whether chmod exists and is declared... yes >checking whether mkfifo exists and is declared... yes >checking whether stat exists and is declared... yes >checking whether umask exists and is declared... yes >checking whether gettimeofday exists and is declared... yes >checking whether utimes exists and is declared... yes >checking whether times exists and is declared... yes >checking whether gmtime_r exists and is declared... yes >checking whether localtime_r exists and is declared... yes >checking whether nl_langinfo exists and is declared... yes >checking whether access exists and is declared... yes >checking whether chdir exists and is declared... yes >checking whether execv exists and is declared... yes >checking whether ftruncate exists and is declared... yes >checking whether getcwd exists and is declared... yes >checking whether geteuid exists and is declared... yes >checking whether getuid exists and is declared... yes >checking whether link exists and is declared... yes >checking whether readlink exists and is declared... yes >checking whether symlink exists and is declared... yes >checking whether sysconf exists and is declared... yes >checking whether sched_setaffinity exists and is declared... yes >checking whether sched_getaffinity exists and is declared... yes >checking whether utime exists and is declared... yes >checking whether utimensat exists and is declared... yes >checking for clock_gettime in -lrt... yes >checking whether clock_gettime exists and is declared... yes >checking whether timespec_get exists and is declared... yes >checking for putenv... yes >checking whether putenv is declared... yes >checking for vasprintf... yes >checking whether vasprintf is declared... yes >checking for mempcpy... yes >checking for realpath... yes >checking whether realpath is declared... yes >checking whether glob exists and is declared... yes >checking for dladdr... yes >checking for dlsym... yes >checking whether dladdr is declared... yes >checking whether dlsym is declared... yes >checking whether RTLD_DEFAULT is declared... yes >checking whether RTLD_NEXT is declared... yes >checking for isnan... yes >checking whether isfinite is declared... yes >checking whether isnan is declared... yes >checking whether you have IEEE 754 floating-point arithmetic... yes >checking whether putenv("FOO") can unset an environment variable... yes >checking whether putenv("FOO=") can unset an environment variable... no >checking for nl_langinfo and CODESET... yes >checking for mkdtemp... yes >checking for strdup... yes >checking for strncasecmp... yes >checking whether mkdtemp is declared... yes >checking whether strdup is declared... yes >checking whether strncasecmp is declared... yes >checking for library containing connect... none required >checking for library containing gethostbyname... none required >checking for library containing xdr_string... none required >checking for working calloc... yes >checking for working isfinite... yes >checking for working log1p... yes >checking whether ftell works correctly on files opened for append... yes >checking for working sigaction... yes >checking whether mktime sets errno... no >checking whether mktime works correctly outside 1902-2037... yes >checking complex.h usability... yes >checking complex.h presence... yes >checking for complex.h... yes >checking for double complex... yes >checking whether C99 double complex is supported... yes >checking whether cabs exists and is declared... yes >checking whether carg exists and is declared... yes >checking whether cexp exists and is declared... yes >checking whether clog exists and is declared... yes >checking whether csqrt exists and is declared... yes >checking whether cpow exists and is declared... yes >checking whether ccos exists and is declared... yes >checking whether csin exists and is declared... yes >checking whether ctan exists and is declared... yes >checking whether cacos exists and is declared... yes >checking whether casin exists and is declared... yes >checking whether catan exists and is declared... yes >checking whether ccosh exists and is declared... yes >checking whether csinh exists and is declared... yes >checking whether ctanh exists and is declared... yes >checking for working ctanh... yes >checking whether 'struct tm' includes tm_zone... yes >checking whether 'struct tm' includes tm_gmtoff... yes 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(cached) no >checking whether included gettext is requested... no >checking for GNU gettext in libc... yes >checking whether to use NLS... yes >checking where the gettext function comes from... libc >Finished configuring src/extra/intl directory > >checking whether OpenMP SIMD reduction is supported... yes >using as R_SHELL for scripts ... /bin/sh >configure: creating ./config.status >config.status: creating Makeconf >config.status: creating Makefile >config.status: creating doc/Makefile >config.status: creating doc/html/Makefile >config.status: creating doc/manual/Makefile >config.status: creating etc/Makefile >config.status: creating etc/Makeconf >config.status: creating etc/Renviron >config.status: creating etc/javaconf >config.status: creating etc/ldpaths >config.status: creating m4/Makefile >config.status: creating po/Makefile >config.status: creating share/Makefile >config.status: creating src/Makefile >config.status: creating src/appl/Makefile >config.status: creating 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creating src/modules/X11/Makefile >config.status: creating src/modules/internet/Makefile >config.status: creating src/modules/lapack/Makefile >config.status: creating src/nmath/Makefile >config.status: creating src/nmath/standalone/Makefile >config.status: creating src/scripts/Makefile >config.status: creating src/scripts/R.sh >config.status: creating src/scripts/Rcmd >config.status: creating src/scripts/f77_f2c >config.status: creating src/scripts/javareconf >config.status: creating src/scripts/mkinstalldirs >config.status: creating src/scripts/pager >config.status: creating src/scripts/rtags >config.status: creating src/unix/Makefile >config.status: creating tests/Makefile >config.status: creating tests/Embedding/Makefile >config.status: creating tests/Examples/Makefile >config.status: creating tools/Makefile >config.status: creating src/include/config.h >config.status: executing libtool commands >config.status: executing stamp-h commands > >R is now configured for x86_64-pc-linux-gnu > > Source directory: . > Installation directory: /usr > > C compiler: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall > Fortran 77 compiler: x86_64-pc-linux-gnu-gfortran -O2 -pipe > > Default C++ compiler: x86_64-pc-linux-gnu-g++ -Werror=terminate -O2 -pipe -march=native > C++98 compiler: x86_64-pc-linux-gnu-g++ -std=gnu++98 -Werror=terminate -O2 -pipe -march=native > C++11 compiler: x86_64-pc-linux-gnu-g++ -std=gnu++11 -Werror=terminate -O2 -pipe -march=native > C++14 compiler: x86_64-pc-linux-gnu-g++ -Werror=terminate -O2 -pipe -march=native > C++17 compiler: > Fortran 90/95 compiler: x86_64-pc-linux-gnu-gfortran -O2 -pipe > Obj-C compiler: x86_64-pc-linux-gnu-gcc > > Interfaces supported: X11 > External libraries: readline, BLAS(generic), curl > Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU > Options enabled: shared R library > > Capabilities skipped: > Options not enabled: shared BLAS, R profiling, memory profiling > > Recommended packages: yes > >configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally >>>> Source configured. >>>> Compiling source in /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1 ... >make -j1 AR=x86_64-pc-linux-gnu-ar >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/m4' >make[1]: Nothing to be done for 'R'. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/m4' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tools' >make[1]: Nothing to be done for 'R'. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tools' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/html' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/html' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/manual' >make[2]: Nothing to be done for 'R'. >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/manual' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/etc' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/etc' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/share' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/share' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/scripts' >creating src/scripts/R.fe >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/scripts' >mkdir -p -- ../../bin >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/scripts' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/scripts' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include' >mkdir -p -- ../../include >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include/R_ext' >mkdir -p -- ../../../include/R_ext >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include/R_ext' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >making regcomp.d from regcomp.c >making regerror.d from regerror.c >making regexec.d from regexec.c >making tre-ast.d from tre-ast.c >making tre-compile.d from tre-compile.c >making tre-match-approx.d from tre-match-approx.c >making tre-match-backtrack.d from tre-match-backtrack.c >making tre-match-parallel.d from tre-match-parallel.c >making tre-mem.d from tre-mem.c >making tre-parse.d from tre-parse.c >making tre-stack.d from tre-stack.c >making xmalloc.d from xmalloc.c >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c regcomp.c -o regcomp.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c regerror.c -o regerror.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c regexec.c -o regexec.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-ast.c -o tre-ast.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-compile.c -o tre-compile.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-mem.c -o tre-mem.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-parse.c -o tre-parse.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c tre-stack.c -o tre-stack.o >x86_64-pc-linux-gnu-gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c xmalloc.c -o xmalloc.o >x86_64-pc-linux-gnu-ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o >x86_64-pc-linux-gnu-ranlib libtre.a >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra/tre' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/extra' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/appl' >making integrate.d from integrate.c >making interv.d from interv.c >making maxcol.d from maxcol.c >making optim.d from optim.c >making pretty.d from pretty.c >making uncmin.d from uncmin.c >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/appl' >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c integrate.c -o integrate.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c interv.c -o interv.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c maxcol.c -o maxcol.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c optim.c -o optim.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pretty.c -o pretty.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c uncmin.c -o uncmin.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dchdc.f -o dchdc.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dpbfa.f -o dpbfa.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dpbsl.f -o dpbsl.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dpoco.f -o dpoco.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dpodi.f -o dpodi.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dpofa.f -o dpofa.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dposl.f -o dposl.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dqrdc.f -o dqrdc.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dqrdc2.f -o dqrdc2.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dqrls.f -o dqrls.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dqrsl.f -o dqrsl.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dqrutl.f -o dqrutl.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dsvdc.f -o dsvdc.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dtrco.f -o dtrco.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dtrsl.f -o dtrsl.o >x86_64-pc-linux-gnu-ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o >x86_64-pc-linux-gnu-ranlib libappl.a >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/appl' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/appl' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath' >making mlutils.d from mlutils.c >making d1mach.d from d1mach.c >making i1mach.d from i1mach.c >making fmax2.d from fmax2.c >making fmin2.d from fmin2.c >making fprec.d from fprec.c >making fround.d from fround.c >making ftrunc.d from ftrunc.c >making sign.d from sign.c >making fsign.d from fsign.c >making imax2.d from imax2.c >making imin2.d from imin2.c >making chebyshev.d from chebyshev.c >making log1p.d from log1p.c >making expm1.d from expm1.c >making lgammacor.d from lgammacor.c >making gammalims.d from gammalims.c >making stirlerr.d from stirlerr.c >making bd0.d from bd0.c >making gamma.d from gamma.c >making lgamma.d from lgamma.c >making gamma_cody.d from gamma_cody.c >making beta.d from beta.c >making lbeta.d from lbeta.c >making polygamma.d from polygamma.c >making cospi.d from cospi.c >making bessel_i.d from bessel_i.c >making bessel_j.d from bessel_j.c >making bessel_k.d from bessel_k.c >making bessel_y.d from bessel_y.c >making choose.d from choose.c >making snorm.d from snorm.c >making sexp.d from sexp.c >making dgamma.d from dgamma.c >making pgamma.d from pgamma.c >making qgamma.d from qgamma.c >making rgamma.d from rgamma.c >making dbeta.d from dbeta.c >making pbeta.d from pbeta.c >making qbeta.d from qbeta.c >making rbeta.d from rbeta.c >making dunif.d from dunif.c >making punif.d from punif.c >making qunif.d from qunif.c >making runif.d from runif.c >making dnorm.d from dnorm.c >making pnorm.d from pnorm.c >making qnorm.d from qnorm.c >making rnorm.d from rnorm.c >making dlnorm.d from dlnorm.c >making plnorm.d from plnorm.c >making qlnorm.d from qlnorm.c >making rlnorm.d from rlnorm.c >making df.d from df.c >making pf.d from pf.c >making qf.d from qf.c >making rf.d from rf.c >making dnf.d from dnf.c >making dt.d from dt.c >making pt.d from pt.c >making qt.d from qt.c >making rt.d from rt.c >making dnt.d from dnt.c >making dchisq.d from dchisq.c >making pchisq.d from pchisq.c >making qchisq.d from qchisq.c >making rchisq.d from rchisq.c >making rnchisq.d from rnchisq.c >making dbinom.d from dbinom.c >making pbinom.d from pbinom.c >making qbinom.d from qbinom.c >making rbinom.d from rbinom.c >making rmultinom.d from rmultinom.c >making dcauchy.d from dcauchy.c >making pcauchy.d from pcauchy.c >making qcauchy.d from qcauchy.c >making rcauchy.d from rcauchy.c >making dexp.d from dexp.c >making pexp.d from pexp.c >making qexp.d from qexp.c >making rexp.d from rexp.c >making dgeom.d from dgeom.c >making pgeom.d from pgeom.c >making qgeom.d from qgeom.c >making rgeom.d from rgeom.c >making dhyper.d from dhyper.c >making phyper.d from phyper.c >making qhyper.d from qhyper.c >making rhyper.d from rhyper.c >making dnbinom.d from dnbinom.c >making pnbinom.d from pnbinom.c >making qnbinom.d from qnbinom.c >making rnbinom.d from rnbinom.c >making dpois.d from dpois.c >making ppois.d from ppois.c >making qpois.d from qpois.c >making rpois.d from rpois.c >making dweibull.d from dweibull.c >making pweibull.d from pweibull.c >making qweibull.d from qweibull.c >making rweibull.d from rweibull.c >making dlogis.d from dlogis.c >making plogis.d from plogis.c >making qlogis.d from qlogis.c >making rlogis.d from rlogis.c >making dnchisq.d from dnchisq.c >making pnchisq.d from pnchisq.c >making qnchisq.d from qnchisq.c >making dnbeta.d from dnbeta.c >making pnbeta.d from pnbeta.c >making qnbeta.d from qnbeta.c >making pnf.d from pnf.c >making pnt.d from pnt.c >making qnf.d from qnf.c >making qnt.d from qnt.c >making ptukey.d from ptukey.c >making qtukey.d from qtukey.c >making toms708.d from toms708.c >making wilcox.d from wilcox.c >making signrank.d from signrank.c >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath' >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c mlutils.c -o mlutils.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c d1mach.c -o d1mach.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c i1mach.c -o i1mach.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c fmax2.c -o fmax2.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c fmin2.c -o fmin2.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c fprec.c -o fprec.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c fround.c -o fround.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c ftrunc.c -o ftrunc.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sign.c -o sign.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c fsign.c -o fsign.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c imax2.c -o imax2.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c imin2.c -o imin2.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c chebyshev.c -o chebyshev.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c log1p.c -o log1p.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c expm1.c -o expm1.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c lgammacor.c -o lgammacor.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gammalims.c -o gammalims.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c stirlerr.c -o stirlerr.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bd0.c -o bd0.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gamma.c -o gamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c lgamma.c -o lgamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gamma_cody.c -o gamma_cody.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c beta.c -o beta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c lbeta.c -o lbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c polygamma.c -o polygamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c cospi.c -o cospi.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_i.c -o bessel_i.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_j.c -o bessel_j.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_k.c -o bessel_k.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_y.c -o bessel_y.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c choose.c -o choose.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c snorm.c -o snorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sexp.c -o sexp.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dgamma.c -o dgamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pgamma.c -o pgamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qgamma.c -o qgamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rgamma.c -o rgamma.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dbeta.c -o dbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pbeta.c -o pbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qbeta.c -o qbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rbeta.c -o rbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dunif.c -o dunif.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c punif.c -o punif.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qunif.c -o qunif.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c runif.c -o runif.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnorm.c -o dnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnorm.c -o pnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnorm.c -o qnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnorm.c -o rnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dlnorm.c -o dlnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c plnorm.c -o plnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qlnorm.c -o qlnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rlnorm.c -o rlnorm.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c df.c -o df.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pf.c -o pf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qf.c -o qf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rf.c -o rf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnf.c -o dnf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dt.c -o dt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pt.c -o pt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qt.c -o qt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rt.c -o rt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnt.c -o dnt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dchisq.c -o dchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pchisq.c -o pchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qchisq.c -o qchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rchisq.c -o rchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnchisq.c -o rnchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dbinom.c -o dbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pbinom.c -o pbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qbinom.c -o qbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rbinom.c -o rbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rmultinom.c -o rmultinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dcauchy.c -o dcauchy.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pcauchy.c -o pcauchy.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qcauchy.c -o qcauchy.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rcauchy.c -o rcauchy.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dexp.c -o dexp.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pexp.c -o pexp.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qexp.c -o qexp.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rexp.c -o rexp.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dgeom.c -o dgeom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pgeom.c -o pgeom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qgeom.c -o qgeom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rgeom.c -o rgeom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dhyper.c -o dhyper.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c phyper.c -o phyper.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qhyper.c -o qhyper.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rhyper.c -o rhyper.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnbinom.c -o dnbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnbinom.c -o pnbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnbinom.c -o qnbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnbinom.c -o rnbinom.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dpois.c -o dpois.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c ppois.c -o ppois.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qpois.c -o qpois.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rpois.c -o rpois.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dweibull.c -o dweibull.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pweibull.c -o pweibull.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qweibull.c -o qweibull.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rweibull.c -o rweibull.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dlogis.c -o dlogis.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c plogis.c -o plogis.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qlogis.c -o qlogis.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rlogis.c -o rlogis.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnchisq.c -o dnchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnchisq.c -o pnchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnchisq.c -o qnchisq.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnbeta.c -o dnbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnbeta.c -o pnbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnbeta.c -o qnbeta.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnf.c -o pnf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnt.c -o pnt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnf.c -o qnf.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnt.c -o qnt.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c ptukey.c -o ptukey.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qtukey.c -o qtukey.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c toms708.c -o toms708.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c wilcox.c -o wilcox.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c signrank.c -o signrank.o >x86_64-pc-linux-gnu-ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o >x86_64-pc-linux-gnu-ranlib libnmath.a >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >config.status: creating src/unix/Makefile >making Rembedded.d from Rembedded.c >making dynload.d from dynload.c >making system.d from system.c >making sys-unix.d from sys-unix.c >making sys-std.d from sys-std.c >making X11.d from X11.c >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c Rembedded.c -o Rembedded.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dynload.c -o dynload.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c system.c -o system.o >system.c: In function âRf_initialize_Râ: >system.c:170:29: warning: variable âuseTkâ set but not used [-Wunused-but-set-variable] > Rboolean useX11 = TRUE, useTk = FALSE; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sys-unix.c -o sys-unix.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sys-std.c -o sys-std.o >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c X11.c -o X11.o >x86_64-pc-linux-gnu-ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o >x86_64-pc-linux-gnu-ranlib libunix.a >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >x86_64-pc-linux-gnu-gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -O2 -pipe -march=native -Wall -Wl,-O1 -Wl,--as-needed -DR_HOME='"/usr/lib64/R"' \ > -o Rscript ./Rscript.c >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/unix' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >config.status: creating src/main/Makefile >making CommandLineArgs.d from CommandLineArgs.c >making Rdynload.d from Rdynload.c >making Renviron.d from Renviron.c >making RNG.d from RNG.c >making agrep.d from agrep.c >making apply.d from apply.c >making arithmetic.d from arithmetic.c >making array.d from array.c >making attrib.d from attrib.c >making bind.d from bind.c >making builtin.d from builtin.c >making character.d from character.c >making coerce.d from coerce.c >making colors.d from colors.c >making complex.d from complex.c >making connections.d from connections.c >making context.d from context.c >making cum.d from cum.c >making dcf.d from dcf.c >making datetime.d from datetime.c >making debug.d from debug.c >making deparse.d from deparse.c >making devices.d from devices.c >making dotcode.d from dotcode.c >making dounzip.d from dounzip.c >making dstruct.d from dstruct.c >making duplicate.d from duplicate.c >making edit.d from edit.c >making engine.d from engine.c >making envir.d from envir.c >making errors.d from errors.c >making eval.d from eval.c >making format.d from format.c >making gevents.d from gevents.c >making gram.d from gram.c >making gram-ex.d from gram-ex.c >making graphics.d from graphics.c >making grep.d from grep.c >making identical.d from identical.c >making inlined.d from inlined.c >making inspect.d from inspect.c >making internet.d from internet.c >making iosupport.d from iosupport.c >making lapack.d from lapack.c >making list.d from list.c >making localecharset.d from localecharset.c >making logic.d from logic.c >making main.d from main.c >making mapply.d from mapply.c >making match.d from match.c >making memory.d from memory.c >making names.d from names.c >making objects.d from objects.c >making options.d from options.c >making paste.d from paste.c >making platform.d from platform.c >making plot.d from plot.c >making plot3d.d from plot3d.c >making plotmath.d from plotmath.c >making print.d from print.c >making printarray.d from printarray.c >making printvector.d from printvector.c >making printutils.d from printutils.c >making qsort.d from qsort.c >making radixsort.d from radixsort.c >making random.d from random.c >making raw.d from raw.c >making registration.d from registration.c >making relop.d from relop.c >making rlocale.d from rlocale.c >making saveload.d from saveload.c >making scan.d from scan.c >making seq.d from seq.c >making serialize.d from serialize.c >making sort.d from sort.c >making source.d from source.c >making split.d from split.c >making sprintf.d from sprintf.c >making startup.d from startup.c >making subassign.d from subassign.c >making subscript.d from subscript.c >making subset.d from subset.c >making summary.d from summary.c >making sysutils.d from sysutils.c >making times.d from times.c >making unique.d from unique.c >making util.d from util.c >making version.d from version.c >making g_alab_her.d from g_alab_her.c >making g_cntrlify.d from g_cntrlify.c >making g_fontdb.d from g_fontdb.c >making g_her_glyph.d from g_her_glyph.c >making Rmain.d from Rmain.c >making alloca.d from alloca.c >making mkdtemp.d from mkdtemp.c >making strdup.d from strdup.c >making strncasecmp.d from strncasecmp.c >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c CommandLineArgs.c -o CommandLineArgs.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c Rdynload.c -o Rdynload.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c Renviron.c -o Renviron.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c RNG.c -o RNG.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c agrep.c -o agrep.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c apply.c -o apply.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c arithmetic.c -o arithmetic.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c array.c -o array.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c attrib.c -o attrib.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c bind.c -o bind.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c builtin.c -o builtin.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c character.c -o character.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c coerce.c -o coerce.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c colors.c -o colors.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c complex.c -o complex.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c connections.c -o connections.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c context.c -o context.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c cum.c -o cum.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dcf.c -o dcf.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c datetime.c -o datetime.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c debug.c -o debug.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c deparse.c -o deparse.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c devices.c -o devices.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dotcode.c -o dotcode.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dounzip.c -o dounzip.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dstruct.c -o dstruct.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c duplicate.c -o duplicate.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c edit.c -o edit.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c engine.c -o engine.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c envir.c -o envir.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c errors.c -o errors.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c eval.c -o eval.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c format.c -o format.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gevents.c -o gevents.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gram.c -o gram.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c gram-ex.c -o gram-ex.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c graphics.c -o graphics.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c grep.c -o grep.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c identical.c -o identical.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c inlined.c -o inlined.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c inspect.c -o inspect.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c internet.c -o internet.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c iosupport.c -o iosupport.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c lapack.c -o lapack.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c list.c -o list.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c localecharset.c -o localecharset.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c logic.c -o logic.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c main.c -o main.o >main.c: In function âdummy_iiâ: >main.c:1669:12: warning: function returns address of local variable [-Wreturn-local-addr] > return (uintptr_t) ⅈ > ^~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c mapply.c -o mapply.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c match.c -o match.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c memory.c -o memory.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c names.c -o names.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c objects.c -o objects.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c options.c -o options.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c paste.c -o paste.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c platform.c -o platform.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c plot.c -o plot.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c plot3d.c -o plot3d.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c plotmath.c -o plotmath.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c print.c -o print.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c printarray.c -o printarray.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c printvector.c -o printvector.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c printutils.c -o printutils.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c qsort.c -o qsort.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c radixsort.c -o radixsort.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c random.c -o random.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c raw.c -o raw.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c registration.c -o registration.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c relop.c -o relop.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rlocale.c -o rlocale.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c saveload.c -o saveload.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c scan.c -o scan.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c seq.c -o seq.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c serialize.c -o serialize.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sort.c -o sort.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c source.c -o source.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c split.c -o split.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sprintf.c -o sprintf.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c startup.c -o startup.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c subassign.c -o subassign.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c subscript.c -o subscript.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c subset.c -o subset.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c summary.c -o summary.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c sysutils.c -o sysutils.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c times.c -o times.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c unique.c -o unique.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c util.c -o util.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c version.c -o version.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c g_alab_her.c -o g_alab_her.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c g_cntrlify.c -o g_cntrlify.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c g_fontdb.c -o g_fontdb.o >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c g_her_glyph.c -o g_her_glyph.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c xxxpr.f -o xxxpr.o >x86_64-pc-linux-gnu-gcc -shared -fopenmp -Wl,-O1 -Wl,--as-needed -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >mkdir -p -- /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/bin/exec >mkdir -p -- /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >x86_64-pc-linux-gnu-gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c Rmain.c -o Rmain.o >x86_64-pc-linux-gnu-gcc -Wl,--export-dynamic -fopenmp -L../../lib -Wl,-O1 -Wl,--as-needed -o R.bin Rmain.o -lR >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/main' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >making Rhttpd.d from Rhttpd.c >making Rsock.d from Rsock.c >making internet.d from internet.c >making libcurl.d from libcurl.c >making nanoftp.d from nanoftp.c >making nanohttp.d from nanohttp.c >making sock.d from sock.c >making sockconn.d from sockconn.c >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c Rsock.c -o Rsock.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c internet.c -o internet.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c libcurl.c -o libcurl.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c nanoftp.c -o nanoftp.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c nanohttp.c -o nanohttp.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c sock.c -o sock.o >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -fvisibility=hidden -c sockconn.c -o sockconn.o >x86_64-pc-linux-gnu-gcc -shared -L../../../lib -Wl,-O1 -Wl,--as-needed -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lssl -lcrypto -lssl -lcrypto -lldap -llber -lz -lR >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >mkdir -p -- /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/modules >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/internet' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >making Lapack.d from Lapack.c >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -ffloat-store -c dlamch.f -o dlamch.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c dlapack.f -o dlapack.o >x86_64-pc-linux-gnu-gfortran -fopenmp -fpic -O2 -pipe -c cmplx.f -o cmplx.o >x86_64-pc-linux-gnu-gcc -shared -fopenmp -Wl,-O1 -Wl,--as-needed -o libRlapack.so dlamch.o dlapack.o cmplx.o -lblas -lgfortran -lm -lquadmath >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c Lapack.c -o Lapack.o >x86_64-pc-linux-gnu-gcc -shared -L../../../lib -Wl,-O1 -Wl,--as-needed -o lapack.so Lapack.o -lR -L../../../lib -lRlapack -lblas -lgfortran -lm -lquadmath >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib/libRlapack.so is unchanged >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/lapack' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >making devX11.d from devX11.c >making rotated.d from rotated.c >making rbitmap.d from rbitmap.c >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >x86_64-pc-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c devX11.c -o devX11.o >x86_64-pc-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rotated.c -o rotated.o >x86_64-pc-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c rbitmap.c -o rbitmap.o >x86_64-pc-linux-gnu-gcc -shared -L../../../lib -Wl,-O1 -Wl,--as-needed -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm >x86_64-pc-linux-gnu-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c dataentry.c -o dataentry.o >x86_64-pc-linux-gnu-gcc -shared -L../../../lib -Wl,-O1 -Wl,--as-needed -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules/X11' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/modules' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >mkdir -p -- ../../library >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/profile' >building system startup profile >mkdir -p -- ../../../library/base/R >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/profile' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/translations' >building package 'translations' >mkdir -p -- ../../../library/translations >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/translations' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/translations' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/translations' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >building package 'base' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >mkdir -p -- ../../../library/base/demo >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >building package 'tools' >mkdir -p -- ../../../library/tools >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >mkdir -p -- ../../../library/tools/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools/src' >making text.d from text.c >making init.d from init.c >making Rmd5.d from Rmd5.c >making md5.d from md5.c >making signals.d from signals.c >making install.d from install.c >making getfmts.d from getfmts.c >making http.d from http.c >making gramLatex.d from gramLatex.c >making gramRd.d from gramRd.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c text.c -o text.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c Rmd5.c -o Rmd5.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c md5.c -o md5.o >md5.c: In function âmd5_finish_ctxâ: >md5.c:102:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] > *(md5_uint32 *) &ctx->buffer[bytes + pad] = SWAP (ctx->total[0] << 3); > ^ >md5.c:103:3: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] > *(md5_uint32 *) &ctx->buffer[bytes + pad + 4] = SWAP ((ctx->total[1] << 3) | > ^ >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c signals.c -o signals.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c install.c -o install.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c getfmts.c -o getfmts.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c http.c -o http.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c gramLatex.c -o gramLatex.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c gramRd.c -o gramRd.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools/src' >mkdir -p -- ../../../../library/tools/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >installing 'sysdata.rda' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >building package 'compiler' >mkdir -p -- ../../../library/compiler >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >mkdir -p -- ../../../library/compiler/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >byte-compiling package 'compiler' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/compiler' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >byte-compiling package 'base' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >byte-compiling package 'tools' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/tools' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >building package 'utils' >mkdir -p -- ../../../library/utils >mkdir -p -- ../../../library/utils/doc >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >mkdir -p -- ../../../library/utils/R >mkdir -p -- ../../../library/utils/Sweave >mkdir -p -- ../../../library/utils/misc >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils/src' >making init.d from init.c >making io.d from io.c >making size.d from size.c >making sock.d from sock.c >making stubs.d from stubs.c >making utils.d from utils.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c io.c -o io.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c size.c -o size.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c sock.c -o sock.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c stubs.c -o stubs.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c utils.c -o utils.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils/src' >mkdir -p -- ../../../../library/utils/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >installing 'sysdata.rda' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >byte-compiling package 'utils' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/utils' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >building package 'grDevices' >mkdir -p -- ../../../library/grDevices >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >mkdir -p -- ../../../library/grDevices/R >mkdir -p -- ../../../library/grDevices/afm >mkdir -p -- ../../../library/grDevices/enc >mkdir -p -- ../../../library/grDevices/icc >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src' >making axis_scales.d from axis_scales.c >making chull.d from chull.c >making devices.d from devices.c >making init.d from init.c >making stubs.d from stubs.c >making colors.d from colors.c >making devCairo.d from devCairo.c >making devPicTeX.d from devPicTeX.c >making devPS.d from devPS.c >making devQuartz.d from devQuartz.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c axis_scales.c -o axis_scales.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c chull.c -o chull.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c devices.c -o devices.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c stubs.c -o stubs.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c colors.c -o colors.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c devCairo.c -o devCairo.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c devPicTeX.c -o devPicTeX.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c devPS.c -o devPS.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O2 -pipe -march=native -Wall -c devQuartz.c -o devQuartz.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src' >mkdir -p -- ../../../../library/grDevices/libs >make[7]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >making cairoBM.d from cairoBM.c >make[8]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >make[9]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >x86_64-pc-linux-gnu-gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -march=native -Wall -c cairoBM.c -o cairoBM.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../../lib -Wl,-O1 -Wl,--as-needed -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -L../../../../../lib -lR -lm >make[9]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >make[8]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >make[7]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src/cairo' >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >byte-compiling package 'grDevices' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grDevices' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >building package 'graphics' >mkdir -p -- ../../../library/graphics >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >mkdir -p -- ../../../library/graphics/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics/src' >making init.d from init.c >making base.d from base.c >making graphics.d from graphics.c >making par.d from par.c >making plot.d from plot.c >making plot3d.d from plot3d.c >making stem.d from stem.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c base.c -o base.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c graphics.c -o graphics.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c par.c -o par.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c plot.c -o plot.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c plot3d.c -o plot3d.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c stem.c -o stem.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics/src' >mkdir -p -- ../../../../library/graphics/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >byte-compiling package 'graphics' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/graphics' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >building package 'stats' >mkdir -p -- ../../../library/stats >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >mkdir -p -- ../../../library/stats/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats/src' >making init.d from init.c >making kmeans.d from kmeans.c >making ansari.d from ansari.c >making bandwidths.d from bandwidths.c >making chisqsim.d from chisqsim.c >making d2x2xk.d from d2x2xk.c >making fexact.d from fexact.c >making kendall.d from kendall.c >making ks.d from ks.c >making line.d from line.c >making smooth.d from smooth.c >making prho.d from prho.c >making swilk.d from swilk.c >making ksmooth.d from ksmooth.c >making loessc.d from loessc.c >making monoSpl.d from monoSpl.c >making isoreg.d from isoreg.c >making Srunmed.d from Srunmed.c >making dblcen.d from dblcen.c >making distance.d from distance.c >making hclust-utils.d from hclust-utils.c >making nls.d from nls.c >making rWishart.d from rWishart.c >making HoltWinters.d from HoltWinters.c >making PPsum.d from PPsum.c >making arima.d from arima.c >making burg.d from burg.c >making filter.d from filter.c >making mAR.d from mAR.c >making pacf.d from pacf.c >making starma.d from starma.c >making port.d from port.c >making family.d from family.c >making sbart.d from sbart.c >making approx.d from approx.c >making loglin.d from loglin.c >making lowess.d from lowess.c >making massdist.d from massdist.c >making splines.d from splines.c >making lm.d from lm.c >making complete_cases.d from complete_cases.c >making cov.d from cov.c >making deriv.d from deriv.c >making fft.d from fft.c >making fourier.d from fourier.c >making model.d from model.c >making optim.d from optim.c >making optimize.d from optimize.c >making integrate.d from integrate.c >making random.d from random.c >making distn.d from distn.c >making zeroin.d from zeroin.c >making rcont.d from rcont.c >making influence.d from influence.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c kmeans.c -o kmeans.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c ansari.c -o ansari.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c bandwidths.c -o bandwidths.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c chisqsim.c -o chisqsim.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c d2x2xk.c -o d2x2xk.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c fexact.c -o fexact.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c kendall.c -o kendall.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c ks.c -o ks.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c line.c -o line.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c smooth.c -o smooth.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c prho.c -o prho.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c swilk.c -o swilk.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c ksmooth.c -o ksmooth.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c loessc.c -o loessc.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c monoSpl.c -o monoSpl.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c isoreg.c -o isoreg.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c Srunmed.c -o Srunmed.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c dblcen.c -o dblcen.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c distance.c -o distance.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c hclust-utils.c -o hclust-utils.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c nls.c -o nls.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c rWishart.c -o rWishart.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c HoltWinters.c -o HoltWinters.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c PPsum.c -o PPsum.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c arima.c -o arima.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c burg.c -o burg.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c filter.c -o filter.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c mAR.c -o mAR.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c pacf.c -o pacf.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c starma.c -o starma.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c port.c -o port.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c family.c -o family.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c sbart.c -o sbart.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c approx.c -o approx.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c loglin.c -o loglin.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c lowess.c -o lowess.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c massdist.c -o massdist.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c splines.c -o splines.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c lm.c -o lm.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c complete_cases.c -o complete_cases.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c cov.c -o cov.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c deriv.c -o deriv.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c fft.c -o fft.o >fft.c: In function âfft_workâ: >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] > nfac--;/*the global one!*/ > ~~~~^~ >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >fft.c:148:9: warning: array subscript is below array bounds [-Warray-bounds] >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c fourier.c -o fourier.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c model.c -o model.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c optim.c -o optim.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c optimize.c -o optimize.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c integrate.c -o integrate.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c random.c -o random.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c distn.c -o distn.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c zeroin.c -o zeroin.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c rcont.c -o rcont.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c influence.c -o influence.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c bsplvd.f -o bsplvd.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c bvalue.f -o bvalue.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c bvalus.f -o bvalus.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c loessf.f -o loessf.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c ppr.f -o ppr.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c qsbart.f -o qsbart.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c sgram.f -o sgram.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c sinerp.f -o sinerp.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c sslvrg.f -o sslvrg.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c stxwx.f -o stxwx.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c hclust.f -o hclust.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c kmns.f -o kmns.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c eureka.f -o eureka.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c stl.f -o stl.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -ffloat-store -c portsrc.f -o portsrc.o >x86_64-pc-linux-gnu-gfortran -fvisibility=hidden -fpic -O2 -pipe -c lminfl.f -o lminfl.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats/src' >mkdir -p -- ../../../../library/stats/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >byte-compiling package 'stats' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/stats' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/datasets' >building package 'datasets' >mkdir -p -- ../../../library/datasets >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/datasets' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/datasets' >mkdir -p -- ../../../library/datasets/data >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/datasets' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >building package 'methods' >mkdir -p -- ../../../library/methods >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >mkdir -p -- ../../../library/methods/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods/src' >making do_substitute_direct.d from do_substitute_direct.c >making init.d from init.c >making methods_list_dispatch.d from methods_list_dispatch.c >making slot.d from slot.c >making class_support.d from class_support.c >making tests.d from tests.c >making utils.d from utils.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c do_substitute_direct.c -o do_substitute_direct.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c methods_list_dispatch.c -o methods_list_dispatch.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c slot.c -o slot.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c class_support.c -o class_support.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c tests.c -o tests.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c utils.c -o utils.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods/src' >mkdir -p -- ../../../../library/methods/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >byte-compiling 'methods' >initializing class and method definitions ... done >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/methods' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >building package 'grid' >mkdir -p -- ../../../library/grid >mkdir -p -- ../../../library/grid/doc >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >mkdir -p -- ../../../library/grid/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid/src' >making gpar.d from gpar.c >making grid.d from grid.c >making just.d from just.c >making layout.d from layout.c >making matrix.d from matrix.c >making register.d from register.c >making state.d from state.c >making unit.d from unit.c >making util.d from util.c >making viewport.d from viewport.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c gpar.c -o gpar.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c grid.c -o grid.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c just.c -o just.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c layout.c -o layout.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c matrix.c -o matrix.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c register.c -o register.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c state.c -o state.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c unit.c -o unit.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c util.c -o util.o >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c viewport.c -o viewport.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid/src' >mkdir -p -- ../../../../library/grid/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >byte-compiling package 'grid' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/grid' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines' >building package 'splines' >mkdir -p -- ../../../library/splines >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines' >mkdir -p -- ../../../library/splines/R >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines' >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines/src' >making splines.d from splines.c >x86_64-pc-linux-gnu-gcc -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c splines.c -o splines.o >x86_64-pc-linux-gnu-gcc -shared -L../../../../lib -Wl,-O1 -Wl,--as-needed -o splines.so splines.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines/src' >mkdir -p -- ../../../../library/splines/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/splines' >make[4]: Entering directory 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-L../../../../lib -Wl,-O1 -Wl,--as-needed -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR >make[6]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel/src' >mkdir -p -- ../../../../library/parallel/libs >make[6]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel/src' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel/src' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel' >byte-compiling package 'parallel' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/parallel' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/base' >installing parsed NAMESPACE files >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[1]: Nothing to be done for 'R'. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >you should 'make docs' now ... >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc' >creating doc/NEWS >creating doc/NEWS.pdf >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/manual' >creating doc/manual/R-FAQ.html >creating doc/manual/version.texi >creating doc/manual/R-admin.html >creating doc/manual/R-data.html >creating doc/manual/R-exts.html >creating doc/manual/R-intro.html >creating doc/manual/R-ints.html >creating doc/manual/R-lang.html >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/html' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/html' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc/manual' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/doc' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >installing parsed Rd >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' > base > stats > utils > methods > graphics > grDevices > datasets > grid > tools > tcltk > splines > stats4 > compiler > parallel >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >building/updating package metadata ... >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >writing package indices >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/Recommended' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/Recommended' >begin installing recommended package MASS >* installing *source* package âMASSâ ... >** package âMASSâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpLp9KQF/R.INSTALL4735cb09780/MASS/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c MASS.c -o MASS.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c lqs.c -o lqs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o MASS.so MASS.o lqs.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpLp9KQF/R.INSTALL4735cb09780/MASS/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/MASS/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (MASS) >begin installing recommended package lattice >* installing *source* package âlatticeâ ... >** package âlatticeâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpETJwo5/R.INSTALL14922de4cbca/lattice/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c threeDplot.c -o threeDplot.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o lattice.so init.o threeDplot.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpETJwo5/R.INSTALL14922de4cbca/lattice/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/lattice/libs >** R >** data >*** moving datasets to lazyload DB >** demo >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (lattice) >begin installing recommended package Matrix >* installing *source* package âMatrixâ ... >** package âMatrixâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c CHMfactor.c -o CHMfactor.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c Csparse.c -o Csparse.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c TMatrix_as.c -o TMatrix_as.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c Tsparse.c -o Tsparse.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c Mutils.c -o Mutils.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c chm_common.c -o chm_common.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c cs.c -o cs.o >cs.c: In function âcs_qrâ: >cs.c:1408:18: warning: variable âmâ set but not used [-Wunused-but-set-variable] > csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai, > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c cs_utils.c -o cs_utils.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dense.c -o dense.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dgCMatrix.c -o dgCMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dgTMatrix.c -o dgTMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dgeMatrix.c -o dgeMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dpoMatrix.c -o dpoMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dppMatrix.c -o dppMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dsCMatrix.c -o dsCMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dsyMatrix.c -o dsyMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dspMatrix.c -o dspMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dtCMatrix.c -o dtCMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dtTMatrix.c -o dtTMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dtrMatrix.c -o dtrMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c dtpMatrix.c -o dtpMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c factorizations.c -o factorizations.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c ldense.c -o ldense.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c lgCMatrix.c -o lgCMatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c sparseQR.c -o sparseQR.o >In file included from /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include/R.h:91:0, > from Mutils.h:12, > from sparseQR.h:4, > from sparseQR.c:1: >sparseQR.c: In function âsparseQR_coefâ: >/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include/R_ext/RS.h:74:25: warning: âxâ may be used uninitialized in this function [-Wmaybe-uninitialized] > #define Free(p) (R_chk_free( (void *)(p) ), (p) = NULL) > ^~~~~~~~~~ >sparseQR.c:164:13: note: âxâ was declared here > double *x; > ^ >sparseQR.c: In function âsparseQR_resid_fittedâ: >sparseQR.c:125:9: warning: âd_aâ may be used uninitialized in this function [-Wmaybe-uninitialized] > d_a[0] = m;/* -> @Dim is ok; @Dimnames (i.e. colnames) still are */ \ > ^ >sparseQR.c:99:41: note: âd_aâ was declared here > m = ydims[0], n = ydims[1], M = V->m, *d_a; \ > ^ >sparseQR.c:194:5: note: in expansion of macro âINIT_sparseQR_â > INIT_sparseQR_(FALSE); > ^~~~~~~~~~~~~~ >In file included from Mutils.h:14:0, > from sparseQR.h:4, > from sparseQR.c:1: >/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include/Rdefines.h:161:35: warning: âaaâ may be used uninitialized in this function [-Wmaybe-uninitialized] > #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) > ^~~~~~~~~~~~~~~~ >sparseQR.c:94:15: note: âaaâ was declared here > SEXP ans, aa, dnms = R_NilValue; \ > ^ >sparseQR.c:194:5: note: in expansion of macro âINIT_sparseQR_â > INIT_sparseQR_(FALSE); > ^~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c abIndex.c -o abIndex.o >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD' >( cd Lib ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD/Lib' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD/Lib' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD' >( cd Source ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD/Source' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD' >( cd Source ; make clean ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD/Source' >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/SuiteSparse_config' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/SuiteSparse_config' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD' >( cd Lib ; make ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD/Lib' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_aat.c -o cholmod_aat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_add.c -o cholmod_add.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_band.c -o cholmod_band.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o >In file included from ../Core/cholmod_change_factor.c:116:0: >../Core/t_cholmod_change_factor.c: In function âr_change_simplicial_numericâ: >../Core/t_cholmod_change_factor.c:40:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >In file included from ../Core/cholmod_change_factor.c:118:0: >../Core/t_cholmod_change_factor.c: In function âc_change_simplicial_numericâ: >../Core/t_cholmod_change_factor.c:40:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c: In function âsimplicial_symbolic_to_super_symbolicâ: >../Core/cholmod_change_factor.c:265:17: warning: variable âxsizeâ set but not used [-Wunused-but-set-variable] > Int nsuper, xsize, ssize ; > ^~~~~ >../Core/cholmod_change_factor.c: In function âchange_simplicial_numericâ: >../Core/cholmod_change_factor.c:680:15: warning: variable âLiâ set but not used [-Wunused-but-set-variable] > Int *Lp, *Li, *Lnz ; > ^~ >../Core/cholmod_change_factor.c:680:10: warning: variable âLpâ set but not used [-Wunused-but-set-variable] > Int *Lp, *Li, *Lnz ; > ^~ >../Core/cholmod_change_factor.c:679:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c:679:13: warning: variable âLxâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c: In function âll_super_to_simplicial_numericâ: >../Core/cholmod_change_factor.c:827:9: warning: variable ânâ set but not used [-Wunused-but-set-variable] > Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; > ^ >../Core/cholmod_change_factor.c:826:21: warning: variable âLpxâ set but not used [-Wunused-but-set-variable] > Int *Ls, *Lpi, *Lpx, *Super, *Li ; > ^~~ >../Core/cholmod_change_factor.c:826:10: warning: variable âLsâ set but not used [-Wunused-but-set-variable] > Int *Ls, *Lpi, *Lpx, *Super, *Li ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_common.c -o cholmod_common.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_complex.c -o cholmod_complex.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_copy.c -o cholmod_copy.o >../Core/cholmod_copy.c: In function âcholmod_copyâ: >../Core/cholmod_copy.c:278:25: warning: variable âloâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, up, lo, values, diag, astype ; > ^~ >../Core/cholmod_copy.c:278:21: warning: variable âupâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, up, lo, values, diag, astype ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_dense.c -o cholmod_dense.o >In file included from ../Core/cholmod_dense.c:48:0: >../Core/t_cholmod_dense.c: In function âp_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >In file included from ../Core/cholmod_dense.c:50:0: >../Core/t_cholmod_dense.c: In function âr_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c: In function âr_cholmod_dense_to_sparseâ: >../Core/t_cholmod_dense.c:136:28: warning: variable âCzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c:136:23: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c: In function âr_cholmod_copy_dense2â: >../Core/t_cholmod_dense.c:229:28: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/t_cholmod_dense.c:229:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >In file included from ../Core/cholmod_dense.c:52:0: >../Core/t_cholmod_dense.c: In function âc_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c: In function âc_cholmod_dense_to_sparseâ: >../Core/t_cholmod_dense.c:136:28: warning: variable âCzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c:136:23: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c: In function âc_cholmod_copy_dense2â: >../Core/t_cholmod_dense.c:229:28: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/t_cholmod_dense.c:229:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/cholmod_dense.c: In function âcholmod_eyeâ: >../Core/cholmod_dense.c:303:15: warning: variable ânzâ set but not used [-Wunused-but-set-variable] > Int i, n, nz ; > ^~ >../Core/cholmod_dense.c:302:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_error.c -o cholmod_error.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_factor.c -o cholmod_factor.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_memory.c -o cholmod_memory.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_sparse.c -o cholmod_sparse.o >../Core/cholmod_sparse.c: In function âcholmod_copy_sparseâ: >../Core/cholmod_sparse.c:488:35: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > Int p, pend, j, ncol, packed, nzmax, nz, xtype ; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_transpose.c -o cholmod_transpose.o >In file included from ../Core/cholmod_transpose.c:124:0: >../Core/t_cholmod_transpose.c: In function âp_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:23: warning: variable âFxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âp_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:23: warning: variable âFxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:126:0: >../Core/t_cholmod_transpose.c: In function âr_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âr_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:128:0: >../Core/t_cholmod_transpose.c: In function âc_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âc_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:131:0: >../Core/t_cholmod_transpose.c: In function âct_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âct_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:133:0: >../Core/t_cholmod_transpose.c: In function âz_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c: In function âz_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >In file included from ../Core/cholmod_transpose.c:136:0: >../Core/t_cholmod_transpose.c: In function âzt_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c: In function âzt_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_triplet.c -o cholmod_triplet.o >In file included from ../Core/cholmod_triplet.c:108:0: >../Core/t_cholmod_triplet.c: In function âp_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:23: warning: variable âTxâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:13: warning: variable âRxâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >In file included from ../Core/cholmod_triplet.c:110:0: >../Core/t_cholmod_triplet.c: In function âr_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >In file included from ../Core/cholmod_triplet.c:112:0: >../Core/t_cholmod_triplet.c: In function âc_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/cholmod_triplet.c: In function âcholmod_triplet_to_sparseâ: >../Core/cholmod_triplet.c:345:44: warning: variable âokâ set but not used [-Wunused-but-set-variable] > Int i, j, p, k, stype, nrow, ncol, nz, ok ; > ^~ >../Core/cholmod_triplet.c:344:20: warning: variable âRiâ set but not used [-Wunused-but-set-variable] > Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Core/cholmod_version.c -o cholmod_version.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Check/cholmod_check.c -o cholmod_check.o >../Check/cholmod_check.c: In function âcheck_commonâ: >../Check/cholmod_check.c:207:61: warning: variable âinit_printâ set but not used [-Wunused-but-set-variable] > Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; > ^~~~~~~~~~ >../Check/cholmod_check.c: In function âcheck_denseâ: >../Check/cholmod_check.c:961:37: warning: variable ânzâ set but not used [-Wunused-but-set-variable] > Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; > ^~ >../Check/cholmod_check.c: In function âcheck_factorâ: >../Check/cholmod_check.c:1508:2: warning: variable âps2â set but not used [-Wunused-but-set-variable] > ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; > ^~~ >../Check/cholmod_check.c:1506:9: warning: variable âpreciseâ set but not used [-Wunused-but-set-variable] > count, precise, init_print, ilast, lnz, head, tail, jprev, plast, > ^~~~~~~ >../Check/cholmod_check.c:1505:38: warning: variable âorderingâ set but not used [-Wunused-but-set-variable] > Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, > ^~~~~~~~ >../Check/cholmod_check.c: In function âcheck_factor.constpropâ: >../Check/cholmod_check.c:1934:48: warning: âpsxendâ may be used uninitialized in this function [-Wmaybe-uninitialized] > || (for_cholesky && psxend - psx != nsrow * nscol)) > ~~~~~~~^~~~~ >../Check/cholmod_check.c:1507:55: warning: âpsxâ may be used uninitialized in this function [-Wmaybe-uninitialized] > jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, > ^~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Check/cholmod_read.c -o cholmod_read.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Check/cholmod_write.c -o cholmod_write.o >../Check/cholmod_write.c: In function âcholmod_write_sparseâ: >../Check/cholmod_write.c:365:33: warning: variable âsymmetryâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, > ^~~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o >../Cholesky/cholmod_analyze.c: In function âcholmod_analyze_p2â: >../Cholesky/cholmod_analyze.c:422:69: warning: variable âncolâ set but not used [-Wunused-but-set-variable] > Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, > ^~~~ >../Cholesky/cholmod_analyze.c:419:45: warning: variable âCParentâ set but not used [-Wunused-but-set-variable] > Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, > ^~~~~~~ >../Cholesky/cholmod_analyze.c:419:35: warning: variable âCmemberâ set but not used [-Wunused-but-set-variable] > Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, > ^~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o >../Cholesky/cholmod_factorize.c: In function âcholmod_factorize_pâ: >../Cholesky/cholmod_factorize.c:114:37: warning: variable ânâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o >In file included from ../Cholesky/cholmod_rowfac.c:164:0: >../Cholesky/t_cholmod_rowfac.c: In function âr_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:166:0: >../Cholesky/t_cholmod_rowfac.c: In function âc_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:168:0: >../Cholesky/t_cholmod_rowfac.c: In function âz_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >In file included from ../Cholesky/cholmod_rowfac.c:172:0: >../Cholesky/t_cholmod_rowfac.c: In function âr_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:174:0: >../Cholesky/t_cholmod_rowfac.c: In function âc_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:176:0: >../Cholesky/t_cholmod_rowfac.c: In function âz_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o >In file included from ../Cholesky/cholmod_solve.c:66:0: >../Cholesky/t_cholmod_solve.c: In function âr_ldl_dsolveâ: >../Cholesky/t_cholmod_solve.c:64:23: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Yx, *Yz ; > ^~ >In file included from ../Cholesky/cholmod_solve.c:69:0: >../Cholesky/t_cholmod_solve.c: In function âc_ldl_dsolveâ: >../Cholesky/t_cholmod_solve.c:64:23: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Yx, *Yz ; > ^~ >../Cholesky/cholmod_solve.c: In function âipermâ: >../Cholesky/cholmod_solve.c:337:13: warning: variable ânkâ set but not used [-Wunused-but-set-variable] > Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o >In file included from ../MatrixOps/cholmod_sdmult.c:46:0: >../MatrixOps/t_cholmod_sdmult.c: In function âr_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >In file included from ../MatrixOps/cholmod_sdmult.c:48:0: >../MatrixOps/t_cholmod_sdmult.c: In function âc_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >In file included from ../MatrixOps/cholmod_sdmult.c:50:0: >../MatrixOps/t_cholmod_sdmult.c: In function âz_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Modify/cholmod_updown.c -o cholmod_updown.o >../Modify/cholmod_updown.c: In function âcholmod_updown_maskâ: >../Modify/cholmod_updown.c:410:33: warning: variable âps1â set but not used [-Wunused-but-set-variable] > *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; > ^~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o >In file included from ../Supernodal/cholmod_super_numeric.c:78:0: >../Supernodal/t_cholmod_super_numeric.c: In function âr_cholmod_super_numericâ: >../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >In file included from ../Supernodal/cholmod_super_numeric.c:80:0: >../Supernodal/t_cholmod_super_numeric.c: In function âc_cholmod_super_numericâ: >../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o >In file included from ../Supernodal/cholmod_super_solve.c:28:0: >../Supernodal/t_cholmod_super_solve.c: In function âr_cholmod_super_lsolveâ: >../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >../Supernodal/t_cholmod_super_solve.c: In function âr_cholmod_super_ltsolveâ: >../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >In file included from ../Supernodal/cholmod_super_solve.c:30:0: >../Supernodal/t_cholmod_super_solve.c: In function âc_cholmod_super_lsolveâ: >../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >../Supernodal/t_cholmod_super_solve.c: In function âc_cholmod_super_ltsolveâ: >../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o >../Supernodal/cholmod_super_symbolic.c: In function âcholmod_super_symbolic2â: >../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable âtotsizeâ set but not used [-Wunused-but-set-variable] > Int totsize ; > ^~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o >In file included from ../Core/cholmod_change_factor.c:116:0: >../Core/t_cholmod_change_factor.c: In function âr_change_simplicial_numericâ: >../Core/t_cholmod_change_factor.c:40:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >In file included from ../Core/cholmod_change_factor.c:118:0: >../Core/t_cholmod_change_factor.c: In function âc_change_simplicial_numericâ: >../Core/t_cholmod_change_factor.c:40:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c: In function âsimplicial_symbolic_to_super_symbolicâ: >../Core/cholmod_change_factor.c:265:17: warning: variable âxsizeâ set but not used [-Wunused-but-set-variable] > Int nsuper, xsize, ssize ; > ^~~~~ >../Core/cholmod_change_factor.c: In function âchange_simplicial_numericâ: >../Core/cholmod_change_factor.c:680:15: warning: variable âLiâ set but not used [-Wunused-but-set-variable] > Int *Lp, *Li, *Lnz ; > ^~ >../Core/cholmod_change_factor.c:680:10: warning: variable âLpâ set but not used [-Wunused-but-set-variable] > Int *Lp, *Li, *Lnz ; > ^~ >../Core/cholmod_change_factor.c:679:18: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c:679:13: warning: variable âLxâ set but not used [-Wunused-but-set-variable] > double *Lx, *Lz ; > ^~ >../Core/cholmod_change_factor.c: In function âll_super_to_simplicial_numericâ: >../Core/cholmod_change_factor.c:827:9: warning: variable ânâ set but not used [-Wunused-but-set-variable] > Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ; > ^ >../Core/cholmod_change_factor.c:826:21: warning: variable âLpxâ set but not used [-Wunused-but-set-variable] > Int *Ls, *Lpi, *Lpx, *Super, *Li ; > ^~~ >../Core/cholmod_change_factor.c:826:10: warning: variable âLsâ set but not used [-Wunused-but-set-variable] > Int *Ls, *Lpi, *Lpx, *Super, *Li ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o >../Core/cholmod_copy.c: In function âcholmod_l_copyâ: >../Core/cholmod_copy.c:278:25: warning: variable âloâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, up, lo, values, diag, astype ; > ^~ >../Core/cholmod_copy.c:278:21: warning: variable âupâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, up, lo, values, diag, astype ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o >In file included from ../Core/cholmod_dense.c:48:0: >../Core/t_cholmod_dense.c: In function âp_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >In file included from ../Core/cholmod_dense.c:50:0: >../Core/t_cholmod_dense.c: In function âr_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c: In function âr_cholmod_dense_to_sparseâ: >../Core/t_cholmod_dense.c:136:28: warning: variable âCzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c:136:23: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c: In function âr_cholmod_copy_dense2â: >../Core/t_cholmod_dense.c:229:28: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/t_cholmod_dense.c:229:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >In file included from ../Core/cholmod_dense.c:52:0: >../Core/t_cholmod_dense.c: In function âc_cholmod_sparse_to_denseâ: >../Core/t_cholmod_dense.c:30:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c:30:23: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Xx, *Az, *Xz ; > ^~ >../Core/t_cholmod_dense.c: In function âc_cholmod_dense_to_sparseâ: >../Core/t_cholmod_dense.c:136:28: warning: variable âCzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c:136:23: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Cx, *Xz, *Cz ; > ^~ >../Core/t_cholmod_dense.c: In function âc_cholmod_copy_dense2â: >../Core/t_cholmod_dense.c:229:28: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/t_cholmod_dense.c:229:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz, *Yx, *Yz ; > ^~ >../Core/cholmod_dense.c: In function âcholmod_l_eyeâ: >../Core/cholmod_dense.c:303:15: warning: variable ânzâ set but not used [-Wunused-but-set-variable] > Int i, n, nz ; > ^~ >../Core/cholmod_dense.c:302:18: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Xx, *Xz ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o >../Core/cholmod_sparse.c: In function âcholmod_l_copy_sparseâ: >../Core/cholmod_sparse.c:488:35: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > Int p, pend, j, ncol, packed, nzmax, nz, xtype ; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o >In file included from ../Core/cholmod_transpose.c:124:0: >../Core/t_cholmod_transpose.c: In function âp_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:23: warning: variable âFxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âp_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:23: warning: variable âFxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:13: warning: variable âAxâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:126:0: >../Core/t_cholmod_transpose.c: In function âr_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âr_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:128:0: >../Core/t_cholmod_transpose.c: In function âc_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âc_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:131:0: >../Core/t_cholmod_transpose.c: In function âct_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:45:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:45:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c: In function âct_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c:142:28: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >../Core/t_cholmod_transpose.c:142:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Fx, *Fz ; > ^~ >In file included from ../Core/cholmod_transpose.c:133:0: >../Core/t_cholmod_transpose.c: In function âz_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c: In function âz_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >In file included from ../Core/cholmod_transpose.c:136:0: >../Core/t_cholmod_transpose.c: In function âzt_cholmod_transpose_unsymâ: >../Core/t_cholmod_transpose.c:47:69: warning: variable âpermuteâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:56: warning: variable âFpackedâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~~~~ >../Core/t_cholmod_transpose.c:47:21: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ; > ^~~~ >../Core/t_cholmod_transpose.c:46:31: warning: variable âFnzâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~~ >../Core/t_cholmod_transpose.c:46:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ; > ^~ >../Core/t_cholmod_transpose.c: In function âzt_cholmod_transpose_symâ: >../Core/t_cholmod_transpose.c:143:26: warning: variable âFpâ set but not used [-Wunused-but-set-variable] > Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o >In file included from ../Core/cholmod_triplet.c:108:0: >../Core/t_cholmod_triplet.c: In function âp_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:23: warning: variable âTxâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:13: warning: variable âRxâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >In file included from ../Core/cholmod_triplet.c:110:0: >../Core/t_cholmod_triplet.c: In function âr_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >In file included from ../Core/cholmod_triplet.c:112:0: >../Core/t_cholmod_triplet.c: In function âc_cholmod_triplet_to_sparseâ: >../Core/t_cholmod_triplet.c:31:28: warning: variable âTzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/t_cholmod_triplet.c:31:18: warning: variable âRzâ set but not used [-Wunused-but-set-variable] > double *Rx, *Rz, *Tx, *Tz ; > ^~ >../Core/cholmod_triplet.c: In function âcholmod_l_triplet_to_sparseâ: >../Core/cholmod_triplet.c:345:44: warning: variable âokâ set but not used [-Wunused-but-set-variable] > Int i, j, p, k, stype, nrow, ncol, nz, ok ; > ^~ >../Core/cholmod_triplet.c:344:20: warning: variable âRiâ set but not used [-Wunused-but-set-variable] > Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o >../Check/cholmod_check.c: In function âcheck_commonâ: >../Check/cholmod_check.c:207:61: warning: variable âinit_printâ set but not used [-Wunused-but-set-variable] > Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ; > ^~~~~~~~~~ >../Check/cholmod_check.c: In function âcheck_denseâ: >../Check/cholmod_check.c:961:37: warning: variable ânzâ set but not used [-Wunused-but-set-variable] > Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ; > ^~ >../Check/cholmod_check.c: In function âcheck_factorâ: >../Check/cholmod_check.c:1508:2: warning: variable âps2â set but not used [-Wunused-but-set-variable] > ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ; > ^~~ >../Check/cholmod_check.c:1506:9: warning: variable âpreciseâ set but not used [-Wunused-but-set-variable] > count, precise, init_print, ilast, lnz, head, tail, jprev, plast, > ^~~~~~~ >../Check/cholmod_check.c:1505:38: warning: variable âorderingâ set but not used [-Wunused-but-set-variable] > Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor, > ^~~~~~~~ >../Check/cholmod_check.c: In function âcheck_factor.constpropâ: >../Check/cholmod_check.c:1934:48: warning: âpsxendâ may be used uninitialized in this function [-Wmaybe-uninitialized] > || (for_cholesky && psxend - psx != nsrow * nscol)) > ~~~~~~~^~~~~ >../Check/cholmod_check.c:1507:55: warning: âpsxâ may be used uninitialized in this function [-Wmaybe-uninitialized] > jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol, > ^~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o >../Check/cholmod_write.c: In function âcholmod_l_write_sparseâ: >../Check/cholmod_write.c:365:33: warning: variable âsymmetryâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype, > ^~~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o >../Cholesky/cholmod_analyze.c: In function âcholmod_l_analyze_p2â: >../Cholesky/cholmod_analyze.c:422:69: warning: variable âncolâ set but not used [-Wunused-but-set-variable] > Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol, > ^~~~ >../Cholesky/cholmod_analyze.c:419:45: warning: variable âCParentâ set but not used [-Wunused-but-set-variable] > Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, > ^~~~~~~ >../Cholesky/cholmod_analyze.c:419:35: warning: variable âCmemberâ set but not used [-Wunused-but-set-variable] > Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent, > ^~~~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o >../Cholesky/cholmod_factorize.c: In function âcholmod_l_factorize_pâ: >../Cholesky/cholmod_factorize.c:114:37: warning: variable ânâ set but not used [-Wunused-but-set-variable] > Int nrow, ncol, stype, convert, n, nsuper, grow2, status ; > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o >In file included from ../Cholesky/cholmod_rowfac.c:164:0: >../Cholesky/t_cholmod_rowfac.c: In function âr_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:166:0: >../Cholesky/t_cholmod_rowfac.c: In function âc_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:168:0: >../Cholesky/t_cholmod_rowfac.c: In function âz_cholmod_rowfacâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >In file included from ../Cholesky/cholmod_rowfac.c:172:0: >../Cholesky/t_cholmod_rowfac.c: In function âr_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:174:0: >../Cholesky/t_cholmod_rowfac.c: In function âc_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >../Cholesky/t_cholmod_rowfac.c:47:48: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:38: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:28: warning: variable âLzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >../Cholesky/t_cholmod_rowfac.c:47:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ; > ^~ >In file included from ../Cholesky/cholmod_rowfac.c:176:0: >../Cholesky/t_cholmod_rowfac.c: In function âz_cholmod_rowfac_maskâ: >../Cholesky/t_cholmod_rowfac.c:51:46: warning: variable ânzmaxâ set but not used [-Wunused-but-set-variable] > use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o >In file included from ../Cholesky/cholmod_solve.c:66:0: >../Cholesky/t_cholmod_solve.c: In function âr_ldl_dsolveâ: >../Cholesky/t_cholmod_solve.c:64:23: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Yx, *Yz ; > ^~ >In file included from ../Cholesky/cholmod_solve.c:69:0: >../Cholesky/t_cholmod_solve.c: In function âc_ldl_dsolveâ: >../Cholesky/t_cholmod_solve.c:64:23: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Yx, *Yz ; > ^~ >../Cholesky/cholmod_solve.c: In function âipermâ: >../Cholesky/cholmod_solve.c:337:13: warning: variable ânkâ set but not used [-Wunused-but-set-variable] > Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o >In file included from ../MatrixOps/cholmod_sdmult.c:46:0: >../MatrixOps/t_cholmod_sdmult.c: In function âr_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >In file included from ../MatrixOps/cholmod_sdmult.c:48:0: >../MatrixOps/t_cholmod_sdmult.c: In function âc_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >../MatrixOps/t_cholmod_sdmult.c:52:47: warning: variable âWzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:38: warning: variable âYzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:28: warning: variable âXzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >../MatrixOps/t_cholmod_sdmult.c:52:18: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ; > ^~ >In file included from ../MatrixOps/cholmod_sdmult.c:50:0: >../MatrixOps/t_cholmod_sdmult.c: In function âz_cholmod_sdmultâ: >../MatrixOps/t_cholmod_sdmult.c:55:17: warning: variable ânrowâ set but not used [-Wunused-but-set-variable] > Int packed, nrow, ncol, j, k, p, pend, kcol, i ; > ^~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o >../Modify/cholmod_updown.c: In function âcholmod_l_updown_maskâ: >../Modify/cholmod_updown.c:410:33: warning: variable âps1â set but not used [-Wunused-but-set-variable] > *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ; > ^~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o >In file included from ../Supernodal/cholmod_super_numeric.c:78:0: >../Supernodal/t_cholmod_super_numeric.c: In function âr_cholmod_super_numericâ: >../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >In file included from ../Supernodal/cholmod_super_numeric.c:80:0: >../Supernodal/t_cholmod_super_numeric.c: In function âc_cholmod_super_numericâ: >../Supernodal/t_cholmod_super_numeric.c:111:33: warning: variable âFzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >../Supernodal/t_cholmod_super_numeric.c:111:28: warning: variable âAzâ set but not used [-Wunused-but-set-variable] > double *Lx, *Ax, *Fx, *Az, *Fz, *C ; > ^~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o >In file included from ../Supernodal/cholmod_super_solve.c:28:0: >../Supernodal/t_cholmod_super_solve.c: In function âr_cholmod_super_lsolveâ: >../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >../Supernodal/t_cholmod_super_solve.c: In function âr_cholmod_super_ltsolveâ: >../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >In file included from ../Supernodal/cholmod_super_solve.c:30:0: >../Supernodal/t_cholmod_super_solve.c: In function âc_cholmod_super_lsolveâ: >../Supernodal/t_cholmod_super_solve.c:33:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >../Supernodal/t_cholmod_super_solve.c: In function âc_cholmod_super_ltsolveâ: >../Supernodal/t_cholmod_super_solve.c:241:10: warning: variable ânâ set but not used [-Wunused-but-set-variable] > nsrow2, n, ps2, j, i, d, nrhs ; > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -pipe -march=native -Wall -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o >../Supernodal/cholmod_super_symbolic.c: In function âcholmod_l_super_symbolic2â: >../Supernodal/cholmod_super_symbolic.c:455:7: warning: variable âtotsizeâ set but not used [-Wunused-but-set-variable] > Int totsize ; > ^~~~~~~ >x86_64-pc-linux-gnu-ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD/Lib' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/CHOLMOD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD' >( cd Source ; make lib ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD/Source' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c colamd_global.c -o colamd_global.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -c colamd.c -o colamd.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c colamd.c -o colamd_l.o >x86_64-pc-linux-gnu-ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/COLAMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD' >( cd Source ; make lib ) >make[5]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD/Source' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_1.c -o amd_i_1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_1.c -o amd_l_1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_2.c -o amd_i_2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_2.c -o amd_l_2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_order.c -o amd_i_order.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_order.c -o amd_l_order.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_control.c -o amd_i_control.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_control.c -o amd_l_control.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_info.c -o amd_i_info.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_info.c -o amd_l_info.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDINT -c amd_global.c -o amd_i_global.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -pipe -march=native -Wall -I../Include -DDLONG -c amd_global.c -o amd_l_global.o >x86_64-pc-linux-gnu-ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o >make[5]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD/Source' >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/AMD' >make[4]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/SuiteSparse_config' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -DNTIMER -fpic -O2 -pipe -march=native -Wall -c SuiteSparse_config.c -o SuiteSparse_config.o >x86_64-pc-linux-gnu-ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o >make[4]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src/SuiteSparse_config' >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lRlapack -lblas -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZWhbLy/R.INSTALL4ed467eaaaca/Matrix/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/Matrix/libs >** R >** data >** inst >** byte-compile and prepare package for lazy loading >Creating a generic function for âchol2invâ from âbaseâ in package âMatrixâ > (from the saved implicit definition) >Creating a generic function for âchol2invâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdiagâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdropâ from package âbaseâ in package âMatrixâ >Creating a generic function for âcov2corâ from package âstatsâ in package âMatrixâ >Creating a generic function for âunnameâ from package âbaseâ in package âMatrixâ >Creating a generic function for ânormâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârcondâ from âbaseâ in package âMatrixâ > (from the saved implicit definition) >Creating a generic function for ârcondâ from package âbaseâ in package âMatrixâ >in method for âcoerceâ with signature â"matrix.csr","dgRMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"dgRMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csc","dgCMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"dgCMatrix","matrix.csc"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.coo","dgTMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"dgTMatrix","matrix.coo"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"dsparseMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csr","dgCMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","dgCMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csr","RsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.csc","CsparseMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.coo","TsparseMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csr","CsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","CsparseMatrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csc","TsparseMatrix"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.csr","TsparseMatrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.csr"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.coo"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"CsparseMatrix","matrix.csc"â: no definition for class âmatrix.cscâ >in method for âcoerceâ with signature â"matrix.csr","Matrix"â: no definition for class âmatrix.csrâ >in method for âcoerceâ with signature â"matrix.coo","Matrix"â: no definition for class âmatrix.cooâ >in method for âcoerceâ with signature â"matrix.csc","Matrix"â: no definition for class âmatrix.cscâ >Creating a generic function for âcolSumsâ from package âbaseâ in package âMatrixâ >Creating a generic function for âcolMeansâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârowSumsâ from package âbaseâ in package âMatrixâ >Creating a generic function for ârowMeansâ from package âbaseâ in package âMatrixâ >in method for âcolSumsâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for ârowSumsâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for âcolMeansâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >in method for ârowMeansâ with signature âx="igCMatrix"â: no definition for class âigCMatrixâ >Creating a generic function for âzapsmallâ from package âbaseâ in package âMatrixâ >Creating a generic function for âdiag<-â from package âbaseâ in package âMatrixâ >Creating a generic function for âcrossprodâ from package âbaseâ in package âMatrixâ >Creating a generic function for âtcrossprodâ from package âbaseâ in package âMatrixâ >Creating a generic function for âwhichâ from package âbaseâ in package âMatrixâ >in method for âcoerceâ with signature â"graphAM","sparseMatrix"â: no definition for class âgraphAMâ >in method for âcoerceâ with signature â"graph","CsparseMatrix"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"graph","Matrix"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"graphNEL","CsparseMatrix"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"graphNEL","TsparseMatrix"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"sparseMatrix","graph"â: no definition for class âgraphâ >in method for âcoerceâ with signature â"sparseMatrix","graphNEL"â: no definition for class âgraphNELâ >in method for âcoerceâ with signature â"TsparseMatrix","graphNEL"â: no definition for class âgraphNELâ >Creating a generic function for âqr.Râ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.Qâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.qyâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.qtyâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.coefâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.residâ from package âbaseâ in package âMatrixâ >Creating a generic function for âqr.fittedâ from package âbaseâ in package âMatrixâ >Creating a generic function for âtoeplitzâ from package âstatsâ in package âMatrixâ >** help >*** installing help indices >** building package indices >Loading required package: Matrix >** installing vignettes >** testing if installed package can be loaded >* DONE (Matrix) >begin installing recommended package nlme >* installing *source* package ânlmeâ ... >** package ânlmeâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZwmNCx/R.INSTALL485f7154ad89/nlme/src' >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c chol.f -o chol.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c corStruct.c -o corStruct.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c gnls.c -o gnls.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c matrix.c -o matrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c nlOptimizer.c -o nlOptimizer.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c nlme.c -o nlme.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c nlmefit.c -o nlmefit.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fvisibility=hidden -fpic -O2 -pipe -march=native -Wall -c pdMat.c -o pdMat.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c rs.f -o rs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpZwmNCx/R.INSTALL485f7154ad89/nlme/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/nlme/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (nlme) >begin installing recommended package survival >* installing *source* package âsurvivalâ ... >** package âsurvivalâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpQp2ZgO/R.INSTALL611e4b9c06d2/survival/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agexact.c -o agexact.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agfit4.c -o agfit4.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agfit5.c -o agfit5.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agmart.c -o agmart.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agmart2.c -o agmart2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agmart3.c -o agmart3.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agscore.c -o agscore.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agsurv3.c -o agsurv3.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agsurv4.c -o agsurv4.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c agsurv5.c -o agsurv5.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c chinv2.c -o chinv2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c chinv3.c -o chinv3.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c cholesky2.c -o cholesky2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c cholesky3.c -o cholesky3.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c chsolve2.c -o chsolve2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c chsolve3.c -o chsolve3.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c concordance1.c -o concordance1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c cox_Rcallback.c -o cox_Rcallback.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxcount1.c -o coxcount1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxdetail.c -o coxdetail.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxexact.c -o coxexact.o >coxexact.c: In function âcoxexactâ: >coxexact.c:151:17: warning: ânriskâ may be used uninitialized in this function [-Wmaybe-uninitialized] > if (maxdeath*nrisk > temp) temp = maxdeath*nrisk; > ~~~~~~~~^~~~~~ >coxexact.c:309:48: warning: âsstartâ may be used uninitialized in this function [-Wmaybe-uninitialized] > d0 = coxd0(ndeath, nrisk, score+sstart, dmem0, maxdeath); > ^ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxfit5.c -o coxfit5.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxfit6.c -o coxfit6.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxmart.c -o coxmart.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxmart2.c -o coxmart2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxph_wtest.c -o coxph_wtest.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxsafe.c -o coxsafe.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxscho.c -o coxscho.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c coxscore.c -o coxscore.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c dmatrix.c -o dmatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c doloop.c -o doloop.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c finegray.c -o finegray.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pyears1.c -o pyears1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pyears2.c -o pyears2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pyears3b.c -o pyears3b.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pystep.c -o pystep.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survConcordance.c -o survConcordance.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survdiff2.c -o survdiff2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survfit4.c -o survfit4.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survfitci.c -o survfitci.o >survfitci.c: In function âsurvfitciâ: >survfitci.c:124:43: warning: âumatâ may be used uninitialized in this function [-Wmaybe-uninitialized] > for (i=0; i<nperson; i++) umat[i][j] = *dptr++; > ~~~~^~~ >survfitci.c:46:38: warning: âusaveâ may be used uninitialized in this function [-Wmaybe-uninitialized] > double **pmat, **vmat, *cumhaz, *usave; > ^~~~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survpenal.c -o survpenal.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survreg6.c -o survreg6.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survreg7.c -o survreg7.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survregc1.c -o survregc1.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survregc2.c -o survregc2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c survsplit.c -o survsplit.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c tmerge.c -o tmerge.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpQp2ZgO/R.INSTALL611e4b9c06d2/survival/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/survival/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** installing vignettes >** testing if installed package can be loaded >* DONE (survival) >begin installing recommended package boot >* installing *source* package âbootâ ... >** package âbootâ successfully unpacked and MD5 sums checked >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (boot) >begin installing recommended package cluster >* installing *source* package âclusterâ ... >** package âclusterâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp2uCugN/R.INSTALL15fb459aa223/cluster/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c clara.c -o clara.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c daisy.f -o daisy.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c dysta.f -o dysta.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c fanny.c -o fanny.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c mona.c -o mona.o >mona.c: In function âclmona_â: >mona.c:261:10: warning: ânelbbâ may be used uninitialized in this function [-Wmaybe-uninitialized] > ner[k] = nelbb; > ~~~~~~~^~~~~~~ >mona.c:248:7: warning: âlccâ may be used uninitialized in this function [-Wmaybe-uninitialized] > int lcc, nelbb; > ^~~ >mona.c:235:6: warning: âjtelzâ may be used uninitialized in this function [-Wmaybe-uninitialized] > km = ka + jtel2; > ^~ >mona.c:218:17: warning: âjtelâ may be used uninitialized in this function [-Wmaybe-uninitialized] > if(verbose) Rprintf(" for(j ..) -> jma=%d, jtel(.,z) = (%d, %d)", jma, jtel, jtelz); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >mona.c:227:18: warning: âjmaâ may be used uninitialized in this function [-Wmaybe-uninitialized] > if (x[nel + jma * x_dim1] == 1) { > ~~~~^~~~~~~~ >mona.c:211:8: warning: âdâ may be used uninitialized in this function [-Wmaybe-uninitialized] > jtel = c + d; > ~~~~~^~~~~~~ >mona.c:211:8: warning: âcâ may be used uninitialized in this function [-Wmaybe-uninitialized] >mona.c:212:9: warning: âbâ may be used uninitialized in this function [-Wmaybe-uninitialized] > jtelz = a + b; > ~~~~~~^~~~~~~ >mona.c:212:9: warning: âaâ may be used uninitialized in this function [-Wmaybe-uninitialized] >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pam.c -o pam.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c sildist.c -o sildist.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c spannel.c -o spannel.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c twins.c -o twins.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp2uCugN/R.INSTALL15fb459aa223/cluster/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/cluster/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (cluster) >begin installing recommended package codetools >* installing *source* package âcodetoolsâ ... >** package âcodetoolsâ successfully unpacked and MD5 sums checked >** R >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (codetools) >begin installing recommended package foreign >* installing *source* package âforeignâ ... >** package âforeignâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp8uBO19/R.INSTALL3c045c0c52dd/foreign/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c R_systat.c -o R_systat.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c Rdbfread.c -o Rdbfread.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c Rdbfwrite.c -o Rdbfwrite.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c SASxport.c -o SASxport.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c avl.c -o avl.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c dbfopen.c -o dbfopen.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c file-handle.c -o file-handle.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c format.c -o format.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c minitab.c -o minitab.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pfm-read.c -o pfm-read.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c sfm-read.c -o sfm-read.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c spss.c -o spss.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c stataread.c -o stataread.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp8uBO19/R.INSTALL3c045c0c52dd/foreign/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/foreign/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (foreign) >begin installing recommended package KernSmooth >* installing *source* package âKernSmoothâ ... >** package âKernSmoothâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmpbiek5Q/R.INSTALL58486b253c8e/KernSmooth/src' >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c blkest.f -o blkest.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c cp.f -o cp.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c dgedi.f -o dgedi.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c dgefa.f -o dgefa.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c dgesl.f -o dgesl.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c linbin.f -o linbin.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c linbin2D.f -o linbin2D.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c locpoly.f -o locpoly.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c rlbin.f -o rlbin.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c sdiag.f -o sdiag.o >x86_64-pc-linux-gnu-gfortran -fpic -O2 -pipe -c sstdiag.f -o sstdiag.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmpbiek5Q/R.INSTALL58486b253c8e/KernSmooth/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/KernSmooth/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (KernSmooth) >begin installing recommended package rpart >* installing *source* package ârpartâ ... >** package ârpartâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmpb2YnjH/R.INSTALL66f163d86528/rpart/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c anova.c -o anova.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c anovapred.c -o anovapred.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c branch.c -o branch.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c bsplit.c -o bsplit.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c choose_surg.c -o choose_surg.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c fix_cp.c -o fix_cp.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c free_tree.c -o free_tree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c gini.c -o gini.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c graycode.c -o graycode.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c insert_split.c -o insert_split.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c make_cp_list.c -o make_cp_list.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c make_cp_table.c -o make_cp_table.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c mysort.c -o mysort.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c nodesplit.c -o nodesplit.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c partition.c -o partition.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c poisson.c -o poisson.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pred_rpart.c -o pred_rpart.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c print_tree.c -o print_tree.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpart.c -o rpart.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpart_callback.c -o rpart_callback.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpartexp.c -o rpartexp.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpartexp2.c -o rpartexp2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpcountup.c -o rpcountup.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rpmatrix.c -o rpmatrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rundown.c -o rundown.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c rundown2.c -o rundown2.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c surrogate.c -o surrogate.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c usersplit.c -o usersplit.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c xpred.c -o xpred.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c xval.c -o xval.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmpb2YnjH/R.INSTALL66f163d86528/rpart/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/rpart/libs >** R >** data >*** moving datasets to lazyload DB >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** installing vignettes >** testing if installed package can be loaded >* DONE (rpart) >begin installing recommended package class >* installing *source* package âclassâ ... >** package âclassâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpmwPHW0/R.INSTALLef546484981/class/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c class.c -o class.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o class.so class.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpmwPHW0/R.INSTALLef546484981/class/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/class/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (class) >begin installing recommended package nnet >* installing *source* package ânnetâ ... >** package ânnetâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp55dTLo/R.INSTALL16243635d952/nnet/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c nnet.c -o nnet.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o nnet.so nnet.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp55dTLo/R.INSTALL16243635d952/nnet/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/nnet/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (nnet) >begin installing recommended package spatial >* installing *source* package âspatialâ ... >** package âspatialâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpMHblOD/R.INSTALL23719dd4c2f/spatial/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c krc.c -o krc.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fpic -O2 -pipe -march=native -Wall -c pps.c -o pps.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o spatial.so init.o krc.o pps.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/RtmpMHblOD/R.INSTALL23719dd4c2f/spatial/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/spatial/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (spatial) >begin installing recommended package mgcv >* installing *source* package âmgcvâ ... >** package âmgcvâ successfully unpacked and MD5 sums checked >** libs >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp68vn7M/R.INSTALL2ec031901c99/mgcv/src' >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c coxph.c -o coxph.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c discrete.c -o discrete.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c gdi.c -o gdi.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c init.c -o init.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c magic.c -o magic.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c mat.c -o mat.o >mat.c: In function âRlanczosâ: >mat.c:2757:15: warning: âcirâ may be used uninitialized in this function [-Wmaybe-uninitialized] > #pragma omp parallel private(i,ri) num_threads(*nt) > ^~~ >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c matrix.c -o matrix.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c mgcv.c -o mgcv.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c misc.c -o misc.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c mvn.c -o mvn.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c qp.c -o qp.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c soap.c -o soap.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c sparse-smooth.c -o sparse-smooth.o >x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/include -DNDEBUG -fopenmp -fpic -O2 -pipe -march=native -Wall -c tprs.c -o tprs.o >x86_64-pc-linux-gnu-gcc -shared -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -Wl,-O1 -Wl,--as-needed -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lRlapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/lib -lR >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/temp/Rtmp68vn7M/R.INSTALL2ec031901c99/mgcv/src' >installing to /var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/library/mgcv/libs >** R >** data >** inst >** byte-compile and prepare package for lazy loading >** help >*** installing help indices >** building package indices >** testing if installed package can be loaded >* DONE (mgcv) >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/Recommended' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library/Recommended' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >building/updating vignettes for package 'grid' ... >building/updating vignettes for package 'parallel' ... >building/updating vignettes for package 'utils' ... >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/library' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1' >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1' >make -j1 -C src/nmath/standalone shared AR=x86_64-pc-linux-gnu-ar >make: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >(cd ../../include; make Rmath.h) >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include' >make[1]: 'Rmath.h' is up to date. >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/include' >Copying source files >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >making mlutils.d from mlutils.c >making d1mach.d from d1mach.c >making i1mach.d from i1mach.c >making fmax2.d from fmax2.c >making fmin2.d from fmin2.c >making fprec.d from fprec.c >making fround.d from fround.c >making ftrunc.d from ftrunc.c >making sign.d from sign.c >making fsign.d from fsign.c >making imax2.d from imax2.c >making imin2.d from imin2.c >making chebyshev.d from chebyshev.c >making log1p.d from log1p.c >making expm1.d from expm1.c >making lgammacor.d from lgammacor.c >making gammalims.d from gammalims.c >making stirlerr.d from stirlerr.c >making bd0.d from bd0.c >making gamma.d from gamma.c >making lgamma.d from lgamma.c >making gamma_cody.d from gamma_cody.c >making beta.d from beta.c >making lbeta.d from lbeta.c >making polygamma.d from polygamma.c >making cospi.d from cospi.c >making bessel_i.d from bessel_i.c >making bessel_j.d from bessel_j.c >making bessel_k.d from bessel_k.c >making bessel_y.d from bessel_y.c >making choose.d from choose.c >making snorm.d from snorm.c >making sexp.d from sexp.c >making dgamma.d from dgamma.c >making pgamma.d from pgamma.c >making qgamma.d from qgamma.c >making rgamma.d from rgamma.c >making dbeta.d from dbeta.c >making pbeta.d from pbeta.c >making qbeta.d from qbeta.c >making rbeta.d from rbeta.c >making dunif.d from dunif.c >making punif.d from punif.c >making qunif.d from qunif.c >making runif.d from runif.c >making dnorm.d from dnorm.c >making pnorm.d from pnorm.c >making qnorm.d from qnorm.c >making rnorm.d from rnorm.c >making dlnorm.d from dlnorm.c >making plnorm.d from plnorm.c >making qlnorm.d from qlnorm.c >making rlnorm.d from rlnorm.c >making df.d from df.c >making pf.d from pf.c >making qf.d from qf.c >making rf.d from rf.c >making dnf.d from dnf.c >making dt.d from dt.c >making pt.d from pt.c >making qt.d from qt.c >making rt.d from rt.c >making dnt.d from dnt.c >making dchisq.d from dchisq.c >making pchisq.d from pchisq.c >making qchisq.d from qchisq.c >making rchisq.d from rchisq.c >making rnchisq.d from rnchisq.c >making dbinom.d from dbinom.c >making pbinom.d from pbinom.c >making qbinom.d from qbinom.c >making rbinom.d from rbinom.c >making rmultinom.d from rmultinom.c >making dcauchy.d from dcauchy.c >making pcauchy.d from pcauchy.c >making qcauchy.d from qcauchy.c >making rcauchy.d from rcauchy.c >making dexp.d from dexp.c >making pexp.d from pexp.c >making qexp.d from qexp.c >making rexp.d from rexp.c >making dgeom.d from dgeom.c >making pgeom.d from pgeom.c >making qgeom.d from qgeom.c >making rgeom.d from rgeom.c >making dhyper.d from dhyper.c >making phyper.d from phyper.c >making qhyper.d from qhyper.c >making rhyper.d from rhyper.c >making dnbinom.d from dnbinom.c >making pnbinom.d from pnbinom.c >making qnbinom.d from qnbinom.c >making rnbinom.d from rnbinom.c >making dpois.d from dpois.c >making ppois.d from ppois.c >making qpois.d from qpois.c >making rpois.d from rpois.c >making dweibull.d from dweibull.c >making pweibull.d from pweibull.c >making qweibull.d from qweibull.c >making rweibull.d from rweibull.c >making dlogis.d from dlogis.c >making plogis.d from plogis.c >making qlogis.d from qlogis.c >making rlogis.d from rlogis.c >making dnchisq.d from dnchisq.c >making pnchisq.d from pnchisq.c >making qnchisq.d from qnchisq.c >making dnbeta.d from dnbeta.c >making pnbeta.d from pnbeta.c >making qnbeta.d from qnbeta.c >making pnf.d from pnf.c >making pnt.d from pnt.c >making qnf.d from qnf.c >making qnt.d from qnt.c >making ptukey.d from ptukey.c >making qtukey.d from qtukey.c >making toms708.d from toms708.c >making wilcox.d from wilcox.c >making signrank.d from signrank.c >making std_unif.d from std_unif.c >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c mlutils.c -o mlutils.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c d1mach.c -o d1mach.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c i1mach.c -o i1mach.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c fmax2.c -o fmax2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c fmin2.c -o fmin2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c fprec.c -o fprec.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c fround.c -o fround.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c ftrunc.c -o ftrunc.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c sign.c -o sign.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c fsign.c -o fsign.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c imax2.c -o imax2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c imin2.c -o imin2.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c chebyshev.c -o chebyshev.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c log1p.c -o log1p.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c expm1.c -o expm1.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c lgammacor.c -o lgammacor.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c gammalims.c -o gammalims.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c stirlerr.c -o stirlerr.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c bd0.c -o bd0.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c gamma.c -o gamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c lgamma.c -o lgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c gamma_cody.c -o gamma_cody.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c beta.c -o beta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c lbeta.c -o lbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c polygamma.c -o polygamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c cospi.c -o cospi.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_i.c -o bessel_i.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_j.c -o bessel_j.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_k.c -o bessel_k.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c bessel_y.c -o bessel_y.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c choose.c -o choose.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c snorm.c -o snorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c sexp.c -o sexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dgamma.c -o dgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pgamma.c -o pgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qgamma.c -o qgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rgamma.c -o rgamma.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dbeta.c -o dbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pbeta.c -o pbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qbeta.c -o qbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rbeta.c -o rbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dunif.c -o dunif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c punif.c -o punif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qunif.c -o qunif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c runif.c -o runif.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnorm.c -o dnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnorm.c -o pnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnorm.c -o qnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnorm.c -o rnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dlnorm.c -o dlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c plnorm.c -o plnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qlnorm.c -o qlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rlnorm.c -o rlnorm.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c df.c -o df.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pf.c -o pf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qf.c -o qf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rf.c -o rf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnf.c -o dnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dt.c -o dt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pt.c -o pt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qt.c -o qt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rt.c -o rt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnt.c -o dnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dchisq.c -o dchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pchisq.c -o pchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qchisq.c -o qchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rchisq.c -o rchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnchisq.c -o rnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dbinom.c -o dbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pbinom.c -o pbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qbinom.c -o qbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rbinom.c -o rbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rmultinom.c -o rmultinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dcauchy.c -o dcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pcauchy.c -o pcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qcauchy.c -o qcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rcauchy.c -o rcauchy.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dexp.c -o dexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pexp.c -o pexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qexp.c -o qexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rexp.c -o rexp.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dgeom.c -o dgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pgeom.c -o pgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qgeom.c -o qgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rgeom.c -o rgeom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dhyper.c -o dhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c phyper.c -o phyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qhyper.c -o qhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rhyper.c -o rhyper.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnbinom.c -o dnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnbinom.c -o pnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnbinom.c -o qnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rnbinom.c -o rnbinom.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dpois.c -o dpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c ppois.c -o ppois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qpois.c -o qpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rpois.c -o rpois.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dweibull.c -o dweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pweibull.c -o pweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qweibull.c -o qweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rweibull.c -o rweibull.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dlogis.c -o dlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c plogis.c -o plogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qlogis.c -o qlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c rlogis.c -o rlogis.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnchisq.c -o dnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnchisq.c -o pnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnchisq.c -o qnchisq.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c dnbeta.c -o dnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnbeta.c -o pnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnbeta.c -o qnbeta.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnf.c -o pnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c pnt.c -o pnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnf.c -o qnf.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qnt.c -o qnt.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c ptukey.c -o ptukey.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c qtukey.c -o qtukey.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c toms708.c -o toms708.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c wilcox.c -o wilcox.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c signrank.c -o signrank.lo >x86_64-pc-linux-gnu-gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O2 -pipe -march=native -Wall -c std_unif.c -o std_unif.lo >x86_64-pc-linux-gnu-gcc -shared -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,-soname=libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm -o libRmath.so >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >make: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/src/nmath/standalone' >>>> Source compiled. >>>> Test phase: dev-lang/R-3.4.1 >make -j1 check >make[1]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests/Examples' >Testing examples for package âbaseâ >Testing examples for package âtoolsâ > comparing âtools-Ex.Routâ to âtools-Ex.Rout.saveâ ... OK >Testing examples for package âutilsâ >Testing examples for package âgrDevicesâ > comparing âgrDevices-Ex.Routâ to âgrDevices-Ex.Rout.saveâ ... OK >Testing examples for package âgraphicsâ > comparing âgraphics-Ex.Routâ to âgraphics-Ex.Rout.saveâ ... OK >Testing examples for package âstatsâ > comparing âstats-Ex.Routâ to âstats-Ex.Rout.saveâ ... OK >Testing examples for package âdatasetsâ > comparing âdatasets-Ex.Routâ to âdatasets-Ex.Rout.saveâ ... OK >Testing examples for package âmethodsâ >Testing examples for package âgridâ > comparing âgrid-Ex.Routâ to âgrid-Ex.Rout.saveâ ... OK >Testing examples for package âsplinesâ > comparing âsplines-Ex.Routâ to âsplines-Ex.Rout.saveâ ... OK >Testing examples for package âstats4â > comparing âstats4-Ex.Routâ to âstats4-Ex.Rout.saveâ ... OK >Testing examples for package âtcltkâ >Testing examples for package âcompilerâ >Testing examples for package âparallelâ >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests/Examples' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running strict specific tests >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running code in 'eval-etc.R' ... OK > comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK >running code in 'simple-true.R' ... OK > comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK >running code in 'arith-true.R' ... OK > comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK >running code in 'arith.R' ... OK > comparing 'arith.Rout' to './arith.Rout.save' ... OK >running code in 'lm-tests.R' ... OK > comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK >running code in 'ok-errors.R' ... OK > comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK >running code in 'method-dispatch.R' ... OK > comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK >running code in 'any-all.R' ... OK > comparing 'any-all.Rout' to './any-all.Rout.save' ... OK >running code in 'd-p-q-r-tests.R' ... OK > comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running sloppy specific tests >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running code in 'complex.R' ... OK > comparing 'complex.Rout' to './complex.Rout.save' ... OK >running code in 'print-tests.R' ... OK > comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK >running code in 'lapack.R' ... OK > comparing 'lapack.Rout' to './lapack.Rout.save' ... OK >running code in 'datasets.R' ... OK > comparing 'datasets.Rout' to './datasets.Rout.save' ... OK >running code in 'datetime.R' ... OK > comparing 'datetime.Rout' to './datetime.Rout.save' ... OK >running code in 'iec60559.R' ... OK > comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[2]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running regression tests ... >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running code in 'array-subset.R' ... OK >running code in 'reg-tests-1a.R' ... OK >running code in 'reg-tests-1b.R' ... OK >running code in 'reg-tests-1c.R' ... OK >running code in 'reg-tests-1d.R' ... OK >running code in 'reg-tests-2.R' ... OK > comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK >running code in 'reg-examples1.R' ... OK >running code in 'reg-examples2.R' ... OK >running code in 'reg-packages.R' ... OK >running code in 'p-qbeta-strict-tst.R' ... OK >running code in 'r-strict-tst.R' ... OK >running code in 'reg-IO.R' ... OK > comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK >running code in 'reg-IO2.R' ... OK > comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK >running code in 'reg-plot.R' ... OK > comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK >running code in 'reg-S4-examples.R' ... OK >running code in 'reg-BLAS.R' ... OK >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[3]: Entering directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >running code in 'reg-tests-3.R' ...make[3]: *** [Makefile.common:100: reg-tests-3.Rout] Error 1 >make[3]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[2]: *** [Makefile.common:275: test-Reg] Error 2 >make[2]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make[1]: *** [Makefile.common:165: test-all-basics] Error 1 >make[1]: Leaving directory '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1/tests' >make: *** [Makefile:239: check] Error 2 > * ERROR: dev-lang/R-3.4.1::gentoo failed (test phase): > * Make check failed. See above for details. > * > * Call stack: > * ebuild.sh, line 124: Called src_test > * environment, line 3168: Called default > * phase-functions.sh, line 853: Called default_src_test > * phase-functions.sh, line 882: Called __eapi0_src_test > * phase-helpers.sh, line 763: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} check || \ > * die "Make check failed. See above for details." > * > * If you need support, post the output of `emerge --info '=dev-lang/R-3.4.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-lang/R-3.4.1::gentoo'`. > * The complete build log is located at '/var/log/portage/dev-lang:R-3.4.1:20170921-081454.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-lang/R-3.4.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-lang/R-3.4.1/temp/environment'. > * Working directory: '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1' > * S: '/var/tmp/portage/dev-lang/R-3.4.1/work/R-3.4.1'
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