sci-physics/meep-1.3:20170827-023022.log

meep-1.3:20170827-023022.log (text/plain), 120.31 KB, created by eroen on 2017-08-27 12:46:11 UTC

 * Package:    sci-physics/meep-1.3
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc examples guile hdf5 kernel_linux mpi userland_GNU
 * FEATURES:   compressdebug installsources network-sandbox preserve-libs sandbox splitdebug test userpriv usersandbox
>>> Unpacking source...
>>> Unpacking meep-1.3.tar.gz to /var/tmp/portage/sci-physics/meep-1.3/work
>>> Source unpacked in /var/tmp/portage/sci-physics/meep-1.3/work
>>> Preparing source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ...
 * Applying meep-1.2-pc-no-ldflags.patch ...
 [ ok ]
 * Applying meep-1.2-no-auto-mpb.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3' ...
 * Running libtoolize --install --copy --force --automake ...
 [ ok ]
 * Running aclocal -I m4 ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running autoheader ...
 [ ok ]
 * Running automake --add-missing --copy --foreign --force-missing ...
 [ ok ]
 * Running elibtoolize in: meep-1.3/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ...
 * econf: updating meep-1.3/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating meep-1.3/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/meep-1.3 --htmldir=/usr/share/doc/meep-1.3/html --libdir=/usr/lib64 --with-mpi --with-hdf5 --with-libctl
configure: loading site script /usr/share/config.site
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking for mpic++... mpic++
checking for MPI_Init... yes
checking for mpi.h... yes
checking for extra flag needed to combine stdio.h and mpi.h... none
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking dependency style of x86_64-pc-linux-gnu-gcc... none
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checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... gcc-nm
checking the name lister (gcc-nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
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checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... gcc-ar
checking for archiver @FILE support... @
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checking for x86_64-pc-linux-gnu-ranlib... gcc-ranlib
checking command to parse gcc-nm output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
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checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
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checking for stdlib.h... yes
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checking for inttypes.h... yes
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checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... mpic++ -E
checking for ld used by mpic++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpic++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for mpic++ option to produce PIC... -fPIC -DPIC
checking if mpic++ PIC flag -fPIC -DPIC works... yes
checking if mpic++ static flag -static works... no
checking if mpic++ supports -c -o file.o... yes
checking if mpic++ supports -c -o file.o... (cached) yes
checking whether the mpic++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for latex2html... no
configure: WARNING: Cannot find latex2html in your path!
checking for sin in -lm... yes
checking for fftw_plan_dft_1d in -lfftw3... yes
checking for x86_64-pc-linux-gnu-g77... no
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checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... no
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for sgemm_... no
checking for ATL_xerbla in -latlas... no
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checking for sgemm_ in -lblas... (cached) no
checking for sgemm_ in -lblas... (cached) no
checking for pkg-config... /usr/bin/pkg-config
checking for harminv >= 1.1... yes
checking HARMINV_CFLAGS... 
checking HARMINV_LIBS... -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath
checking mpb.h usability... no
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checking for cblas_cgemm in -lgslcblas... yes
checking for gsl_sf_bessel_Jn in -lgsl... yes
checking for deflate in -lz... yes
checking for H5Pcreate in -lhdf5... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for H5Pset_mpi... no
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checking for mpirun... mpirun
checking for guile-config... guile-config
checking if linking to guile works... yes
checking libguile.h usability... yes
checking libguile.h presence... yes
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checking guile/gh.h usability... no
checking guile/gh.h presence... no
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checking for scm_make_smob_type... yes
checking for SCM_SMOB_PREDICATE... no
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checking how to activate readline in Guile... ice-9 readline
checking for libctl dir... /usr/share/libctl
checking for gen-ctl-io... gen-ctl-io
checking for ctl_get_vector3 in -lctl... yes
checking ctl.h usability... yes
checking ctl.h presence... yes
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checking whether libctl version is at least 3.2.0... ok
checking for libctl_quiet feature... yes
checking for basename in -lgen... no
checking for feenableexcept... yes
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checking whether to catch and ignore SIGFPE signals... no
checking whether time.h and sys/time.h may both be included... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
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checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for cblas_ddot... yes
checking for cblas_daxpy... yes
checking for jn... yes
checking for C/C++ restrict keyword... __restrict
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating meep-pkgconfig
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating examples/Makefile
config.status: creating libctl/Makefile
config.status: creating libctl/meep.scm
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ...
make -j4 -l10 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
Making all in src
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o anisotropic_averaging.lo anisotropic_averaging.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bands.lo bands.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o boundaries.lo boundaries.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bicgstab.lo bicgstab.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c boundaries.cpp -o boundaries.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c bands.cpp -o bands.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c bicgstab.cpp -o bicgstab.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c anisotropic_averaging.cpp -o anisotropic_averaging.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o casimir.lo casimir.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o control_c.lo control_c.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c control_c.cpp -o control_c.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c casimir.cpp -o casimir.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o cw_fields.lo cw_fields.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c cw_fields.cpp -o cw_fields.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o dft.lo dft.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c dft.cpp -o dft.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o dft_ldos.lo dft_ldos.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c dft_ldos.cpp -o dft_ldos.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o energy_and_flux.lo energy_and_flux.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c energy_and_flux.cpp -o energy_and_flux.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o fields.lo fields.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o loop_in_chunks.lo loop_in_chunks.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c loop_in_chunks.cpp -o loop_in_chunks.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o grace.lo grace.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c fields.cpp -o fields.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c grace.cpp -o grace.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5fields.lo h5fields.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c h5fields.cpp -o h5fields.o
[01m[Kgrace.cpp:[m[K In destructor '[01m[Kmeep::grace::~grace()[m[K':
[01m[Kgrace.cpp:73:39:[m[K [01;35m[Kwarning: [m[Kignoring return value of '[01m[Kint system(const char*)[m[K', declared with attribute warn_unused_result [[01;35m[K-Wunused-result[m[K]
   if (my_rank() == 0) system(gracecmd)[01;35m[K;[m[K
                                       [01;35m[K^[m[K
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5file.lo h5file.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c h5file.cpp -o h5file.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o initialize.lo initialize.cpp
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate.lo integrate.cpp
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c initialize.cpp -o initialize.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c integrate.cpp -o integrate.o
/bin/sh ../libtool  --tag=CXX   --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate2.lo integrate2.cpp
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[01m[Koutput_directory.cpp:[m[K In member function '[01m[Kvoid meep::structure::set_output_directory(const char*)[m[K':
[01m[Koutput_directory.cpp:43:30:[m[K [01;35m[Kwarning: [m[Kignoring return value of '[01m[Kint symlink(const char*, const char*)[m[K', declared with attribute warn_unused_result [[01;35m[K-Wunused-result[m[K]
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libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c stress.cpp -o stress.o
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libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c susceptibility.cpp -o susceptibility.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c structure.cpp -o structure.o
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libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c time.cpp -o time.o
libtool: compile:  mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -pthread -I/usr/include/guile/2.0 -march=corei7-avx -pipe -Og -g -gdwarf-4 -c update_eh.cpp -o update_eh.o
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mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o sphere-quad.o sphere-quad.cpp
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/bin/sh ../libtool  --tag=CXX   --mode=link mpic++  -march=corei7-avx -pipe -Og -g -gdwarf-4 -version-info 8:0:0 -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o libmeep_mpi.la -rpath /usr/lib64 anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo control_c.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo loop_in_chunks.lo grace.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo  step_generic_stride1.lo  -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath   -lfftw3 -lm   -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath
libtool: link: gcc-ar cru .libs/libmeep_mpi.a  anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o control_c.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o loop_in_chunks.o grace.o h5fields.o h5file.o initialize.o integrate.o integrate2.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o step_generic_stride1.o
libtool: link: gcc-ranlib .libs/libmeep_mpi.a
libtool: link: ( cd ".libs" && rm -f "libmeep_mpi.la" && ln -s "../libmeep_mpi.la" "libmeep_mpi.la" )
make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
Making all in libctl
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make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
gen-ctl-io --cxx --header -o ctl-io.h meep.scm /usr/share/libctl
;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0
;;;       or pass the --no-auto-compile argument to disable.
;;; compiling /usr/share/libctl/base/include.scm
;;; compiled /var/tmp/portage/sci-physics/meep-1.3/homedir/.cache/guile/ccache/2.0-LE-8-2.0/usr/share/libctl/base/include.scm.go
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep.o meep.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o structure.o structure.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep_wrap.o meep_wrap.cxx
cp -f /usr/share/libctl/base/main.c main.cpp
cp -f /usr/share/libctl/utils/geom.c geom.cpp
gen-ctl-io --cxx --code -o ctl-io.cpp meep.scm /usr/share/libctl
[01m[Kmeep_wrap.cxx:[m[K In function '[01m[Kint SwigVector3_Check(SCM)[m[K':
[01m[Kmeep_wrap.cxx:1384:23:[m[K [01;31m[Kerror: [m[K'[01m[KSCM_VECTORP[m[K' was not declared in this scope
   return SCM_VECTORP(o[01;31m[K)[m[K && SCM_VECTOR_LENGTH(o) == 3;
                       [01;31m[K^[m[K
[01m[Kmeep_wrap.cxx:1384:47:[m[K [01;31m[Kerror: [m[K'[01m[KSCM_VECTOR_LENGTH[m[K' was not declared in this scope
   return SCM_VECTORP(o) && SCM_VECTOR_LENGTH(o[01;31m[K)[m[K == 3;
                                               [01;31m[K^[m[K
[01m[Kstructure.cpp:[m[K In function '[01m[Kmeep::structure* make_structure(int, vector3, vector3, double, bool, double, int, bool, ctlio::geometric_object_list, ctlio::material_type_list, ctlio::material_type, const char*, ctlio::pml_list, ctlio::symmetry_list, int, double, double, double)[m[K':
[01m[Kstructure.cpp:1511:51:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
   number no_size = 2.0 / ctl_get_number("infinity"[01;35m[K)[m[K;
                                                   [01;35m[K^[m[K
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o main.o main.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o geom.o geom.cpp
[01m[Kmain.cpp:[m[K In function '[01m[Kvoid main_entry(void*, int, char**)[m[K':
[01m[Kmain.cpp:223:22:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
   ctl_include(CTL_SCM[01;35m[K)[m[K;
                      [01;35m[K^[m[K
[01m[Kmain.cpp:249:26:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
      ctl_include(SPEC_SCM[01;35m[K)[m[K;
                          [01;35m[K^[m[K
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o ctl-io.o ctl-io.cpp
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::near2far_region_input(SCM, ctlio::near2far_region*)[m[K':
[01m[Kctl-io.cpp:31:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:32:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:33:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:34:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->weight = cnumber_object_property(so, "weight"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::force_region_input(SCM, ctlio::force_region*)[m[K':
[01m[Kctl-io.cpp:39:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:40:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:41:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:42:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->weight = cnumber_object_property(so, "weight"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::flux_region_input(SCM, ctlio::flux_region*)[m[K':
[01m[Kctl-io.cpp:47:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:48:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:49:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:50:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->weight = cnumber_object_property(so, "weight"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::eigenmode_source_input(SCM, ctlio::eigenmode_source*)[m[K':
[01m[Kctl-io.cpp:55:69:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_lattice_size = vector3_object_property(so, "eig-lattice-size"[01;35m[K)[m[K;
                                                                     [01;35m[K^[m[K
[01m[Kctl-io.cpp:56:73:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_lattice_center = vector3_object_property(so, "eig-lattice-center"[01;35m[K)[m[K;
                                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:57:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->component = integer_object_property(so, "component"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:58:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:59:53:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_band = integer_object_property(so, "eig-band"[01;35m[K)[m[K;
                                                     [01;35m[K^[m[K
[01m[Kctl-io.cpp:60:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_kpoint = vector3_object_property(so, "eig-kpoint"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:61:67:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_match_freqp = boolean_object_property(so, "eig-match-freq?"[01;35m[K)[m[K;
                                                                   [01;35m[K^[m[K
[01m[Kctl-io.cpp:62:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_parity = integer_object_property(so, "eig-parity"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:63:65:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_resolution = integer_object_property(so, "eig-resolution"[01;35m[K)[m[K;
                                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:64:62:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->eig_tolerance = number_object_property(so, "eig-tolerance"[01;35m[K)[m[K;
                                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::source_input(SCM, ctlio::source*)[m[K':
[01m[Kctl-io.cpp:69:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 src_time_input(object_object_property(so, "src"[01;35m[K)[m[K, &o->src);
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:70:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->component = integer_object_property(so, "component"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:71:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:72:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:73:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->amplitude = cnumber_object_property(so, "amplitude"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:74:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->amp_func = SCM_object_property(so, "amp-func"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:75:44:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("eigenmode-source", so[01;35m[K)[m[K) {
                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::custom_src_input(SCM, ctlio::custom_src*)[m[K':
[01m[Kctl-io.cpp:86:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->src_func = function_object_property(so, "src-func"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:87:56:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->start_time = number_object_property(so, "start-time"[01;35m[K)[m[K;
                                                        [01;35m[K^[m[K
[01m[Kctl-io.cpp:88:52:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->end_time = number_object_property(so, "end-time"[01;35m[K)[m[K;
                                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:89:47:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->swigval = SCM_object_property(so, "swigval"[01;35m[K)[m[K;
                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::gaussian_src_input(SCM, ctlio::gaussian_src*)[m[K':
[01m[Kctl-io.cpp:94:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->frequency = number_object_property(so, "frequency"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:95:46:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->width = number_object_property(so, "width"[01;35m[K)[m[K;
                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:96:56:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->start_time = number_object_property(so, "start-time"[01;35m[K)[m[K;
                                                        [01;35m[K^[m[K
[01m[Kctl-io.cpp:97:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->cutoff = number_object_property(so, "cutoff"[01;35m[K)[m[K;
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:98:47:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->swigval = SCM_object_property(so, "swigval"[01;35m[K)[m[K;
                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::continuous_src_input(SCM, ctlio::continuous_src*)[m[K':
[01m[Kctl-io.cpp:103:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->frequency = number_object_property(so, "frequency"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:104:56:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->start_time = number_object_property(so, "start-time"[01;35m[K)[m[K;
                                                        [01;35m[K^[m[K
[01m[Kctl-io.cpp:105:52:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->end_time = number_object_property(so, "end-time"[01;35m[K)[m[K;
                                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:106:46:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->width = number_object_property(so, "width"[01;35m[K)[m[K;
                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:107:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->cutoff = number_object_property(so, "cutoff"[01;35m[K)[m[K;
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:108:47:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->swigval = SCM_object_property(so, "swigval"[01;35m[K)[m[K;
                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::src_time_input(SCM, ctlio::src_time*)[m[K':
[01m[Kctl-io.cpp:113:65:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->is_integratedp = boolean_object_property(so, "is-integrated?"[01;35m[K)[m[K;
                                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:114:38:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("custom-src", so[01;35m[K)[m[K) {
                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:119:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("gaussian-src", so[01;35m[K)[m[K) {
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:124:47:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("continuous-src", so[01;35m[K)[m[K) {
                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::volume_class_input(SCM, ctlio::volume_class*)[m[K':
[01m[Kctl-io.cpp:135:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:136:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::pml_input(SCM, ctlio::pml*)[m[K':
[01m[Kctl-io.cpp:145:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->thickness = number_object_property(so, "thickness"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:146:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:147:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->side = integer_object_property(so, "side"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:148:52:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->strength = number_object_property(so, "strength"[01;35m[K)[m[K;
                                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:149:60:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->R_asymptotic = number_object_property(so, "R-asymptotic"[01;35m[K)[m[K;
                                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:150:60:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->mean_stretch = number_object_property(so, "mean-stretch"[01;35m[K)[m[K;
                                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:151:60:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->pml_profile = function_object_property(so, "pml-profile"[01;35m[K)[m[K;
                                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:152:36:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("absorber", so[01;35m[K)[m[K) {
                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::symmetry_input(SCM, ctlio::symmetry*)[m[K':
[01m[Kctl-io.cpp:175:55:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->direction = integer_object_property(so, "direction"[01;35m[K)[m[K;
                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:176:47:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->phase = cnumber_object_property(so, "phase"[01;35m[K)[m[K;
                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:177:38:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("mirror-sym", so[01;35m[K)[m[K) {
                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:182:44:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("rotate4-sym", so[01;35m[K)[m[K) {
                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:187:44:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("rotate2-sym", so[01;35m[K)[m[K) {
                                            [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::lattice_input(SCM, ctlio::lattice*)[m[K':
[01m[Kctl-io.cpp:198:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->basis1 = vector3_object_property(so, "basis1"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:199:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->basis2 = vector3_object_property(so, "basis2"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:200:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->basis3 = vector3_object_property(so, "basis3"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:201:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:202:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->basis_size = vector3_object_property(so, "basis-size"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:203:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->b1 = vector3_object_property(so, "b1"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:204:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->b2 = vector3_object_property(so, "b2"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:205:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->b3 = vector3_object_property(so, "b3"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:206:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->basis = matrix3x3_object_property(so, "basis"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:207:51:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->metric = matrix3x3_object_property(so, "metric"[01;35m[K)[m[K;
                                                   [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::ellipsoid_input(SCM, ctlio::ellipsoid*)[m[K':
[01m[Kctl-io.cpp:212:71:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->inverse_semi_axes = vector3_object_property(so, "inverse-semi-axes"[01;35m[K)[m[K;
                                                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::block_input(SCM, ctlio::block*)[m[K':
[01m[Kctl-io.cpp:217:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->e1 = vector3_object_property(so, "e1"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:218:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->e2 = vector3_object_property(so, "e2"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:219:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->e3 = vector3_object_property(so, "e3"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:220:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->size = vector3_object_property(so, "size"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:221:73:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->projection_matrix = matrix3x3_object_property(so, "projection-matrix"[01;35m[K)[m[K;
                                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:222:37:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("ellipsoid", so[01;35m[K)[m[K) {
                                     [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::sphere_input(SCM, ctlio::sphere*)[m[K':
[01m[Kctl-io.cpp:233:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->radius = number_object_property(so, "radius"[01;35m[K)[m[K;
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::wedge_input(SCM, ctlio::wedge*)[m[K':
[01m[Kctl-io.cpp:238:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->wedge_angle = number_object_property(so, "wedge-angle"[01;35m[K)[m[K;
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:239:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->wedge_start = vector3_object_property(so, "wedge-start"[01;35m[K)[m[K;
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:240:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->e1 = vector3_object_property(so, "e1"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:241:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->e2 = vector3_object_property(so, "e2"[01;35m[K)[m[K;
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::cone_input(SCM, ctlio::cone*)[m[K':
[01m[Kctl-io.cpp:246:50:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->radius2 = number_object_property(so, "radius2"[01;35m[K)[m[K;
                                                  [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::cylinder_input(SCM, ctlio::cylinder*)[m[K':
[01m[Kctl-io.cpp:251:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->axis = vector3_object_property(so, "axis"[01;35m[K)[m[K;
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:252:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->radius = number_object_property(so, "radius"[01;35m[K)[m[K;
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:253:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->height = number_object_property(so, "height"[01;35m[K)[m[K;
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:254:33:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("wedge", so[01;35m[K)[m[K) {
                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:259:37:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("cone", so[01;35m[K)[m[K) {
                                     [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::compound_geometric_object_input(SCM, ctlio::compound_geometric_object*)[m[K':
[01m[Kctl-io.cpp:271:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 list lo_t = list_object_property(so, "component-objects"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::geometric_object_input(SCM, ctlio::geometric_object*)[m[K':
[01m[Kctl-io.cpp:283:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 material_type_input(object_object_property(so, "material"[01;35m[K)[m[K, &o->material);
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:284:49:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->center = vector3_object_property(so, "center"[01;35m[K)[m[K;
                                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:285:33:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("block", so[01;35m[K)[m[K) {
                                 [01;35m[K^[m[K
[01m[Kctl-io.cpp:290:39:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("sphere", so[01;35m[K)[m[K) {
                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:295:41:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("cylinder", so[01;35m[K)[m[K) {
                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:300:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("compound-geometric-object", so[01;35m[K)[m[K) {
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::material_function_input(SCM, ctlio::material_function*)[m[K':
[01m[Kctl-io.cpp:311:64:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->material_func = function_object_property(so, "material-func"[01;35m[K)[m[K;
                                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::medium_input(SCM, ctlio::medium*)[m[K':
[01m[Kctl-io.cpp:320:61:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->epsilon_diag = vector3_object_property(so, "epsilon-diag"[01;35m[K)[m[K;
                                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:321:67:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->epsilon_offdiag = vector3_object_property(so, "epsilon-offdiag"[01;35m[K)[m[K;
                                                                   [01;35m[K^[m[K
[01m[Kctl-io.cpp:322:51:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->mu_diag = vector3_object_property(so, "mu-diag"[01;35m[K)[m[K;
                                                   [01;35m[K^[m[K
[01m[Kctl-io.cpp:323:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->mu_offdiag = vector3_object_property(so, "mu-offdiag"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:325:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 list lo_t = list_object_property(so, "E-susceptibilities"[01;35m[K)[m[K;
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:334:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 list lo_t = list_object_property(so, "H-susceptibilities"[01;35m[K)[m[K;
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:342:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->E_chi2_diag = vector3_object_property(so, "E-chi2-diag"[01;35m[K)[m[K;
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:343:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->E_chi3_diag = vector3_object_property(so, "E-chi3-diag"[01;35m[K)[m[K;
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:344:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->H_chi2_diag = vector3_object_property(so, "H-chi2-diag"[01;35m[K)[m[K;
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:345:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->H_chi3_diag = vector3_object_property(so, "H-chi3-diag"[01;35m[K)[m[K;
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:346:75:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->D_conductivity_diag = vector3_object_property(so, "D-conductivity-diag"[01;35m[K)[m[K;
                                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:347:75:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->B_conductivity_diag = vector3_object_property(so, "B-conductivity-diag"[01;35m[K)[m[K;
                                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::noisy_drude_susceptibility_input(SCM, ctlio::noisy_drude_susceptibility*)[m[K':
[01m[Kctl-io.cpp:352:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->noise_amp = number_object_property(so, "noise-amp"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::noisy_lorentzian_susceptibility_input(SCM, ctlio::noisy_lorentzian_susceptibility*)[m[K':
[01m[Kctl-io.cpp:357:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->noise_amp = number_object_property(so, "noise-amp"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::drude_susceptibility_input(SCM, ctlio::drude_susceptibility*)[m[K':
[01m[Kctl-io.cpp:362:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->frequency = number_object_property(so, "frequency"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:363:46:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->gamma = number_object_property(so, "gamma"[01;35m[K)[m[K;
                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:364:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("noisy-drude-susceptibility", so[01;35m[K)[m[K) {
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::lorentzian_susceptibility_input(SCM, ctlio::lorentzian_susceptibility*)[m[K':
[01m[Kctl-io.cpp:375:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->frequency = number_object_property(so, "frequency"[01;35m[K)[m[K;
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:376:46:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->gamma = number_object_property(so, "gamma"[01;35m[K)[m[K;
                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:377:59:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("noisy-lorentzian-susceptibility", so[01;35m[K)[m[K) {
                                                           [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::susceptibility_input(SCM, ctlio::susceptibility*)[m[K':
[01m[Kctl-io.cpp:388:63:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->sigma_offdiag = vector3_object_property(so, "sigma-offdiag"[01;35m[K)[m[K;
                                                               [01;35m[K^[m[K
[01m[Kctl-io.cpp:389:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 o->sigma_diag = vector3_object_property(so, "sigma-diag"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:390:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("drude-susceptibility", so[01;35m[K)[m[K) {
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:395:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("lorentzian-susceptibility", so[01;35m[K)[m[K) {
                                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kvoid ctlio::material_type_input(SCM, ctlio::material_type*)[m[K':
[01m[Kctl-io.cpp:406:45:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 if (object_is_member("material-function", so[01;35m[K)[m[K) {
                                             [01;35m[K^[m[K
[01m[Kctl-io.cpp:411:46:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("perfect-metal", so[01;35m[K)[m[K) {
                                              [01;35m[K^[m[K
[01m[Kctl-io.cpp:416:39:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 else if (object_is_member("medium", so[01;35m[K)[m[K) {
                                       [01;35m[K^[m[K
[01m[Kctl-io.cpp:[m[K In function '[01m[Kscm_unused_struct* ctlio::read_input_vars()[m[K':
[01m[Kctl-io.cpp:1490:57:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 epsilon_input_file = ctl_get_string("epsilon-input-file"[01;35m[K)[m[K;
                                                         [01;35m[K^[m[K
[01m[Kctl-io.cpp:1491:42:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 dimensions = ctl_get_integer("dimensions"[01;35m[K)[m[K;
                                          [01;35m[K^[m[K
[01m[Kctl-io.cpp:1492:54:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 material_type_input(ctl_get_object("default-material"[01;35m[K)[m[K, &default_material);
                                                      [01;35m[K^[m[K
[01m[Kctl-io.cpp:1493:52:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 geometry_center = ctl_get_vector3("geometry-center"[01;35m[K)[m[K;
                                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:1494:48:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 lattice_input(ctl_get_object("geometry-lattice"[01;35m[K)[m[K, &geometry_lattice);
                                                [01;35m[K^[m[K
[01m[Kctl-io.cpp:1496:36:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 list lo_t = ctl_get_list("geometry"[01;35m[K)[m[K;
                                    [01;35m[K^[m[K
[01m[Kctl-io.cpp:1504:58:[m[K [01;35m[Kwarning: [m[KISO C++ forbids converting a string constant to '[01m[Kchar*[m[K' [[01;35m[K-Wwrite-strings[m[K]
 ensure_periodicity = ctl_get_boolean("ensure-periodicity"[01;35m[K)[m[K;
                                                          [01;35m[K^[m[K
make[3]: *** [Makefile:528: meep_wrap.o] Error 1
make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make[2]: *** [Makefile:400: all] Error 2
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make[1]: *** [Makefile:491: all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
make: *** [Makefile:400: all] Error 2
 * ERROR: sci-physics/meep-1.3::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-physics/meep-1.3::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-physics/meep-1.3::gentoo'`.
 * The complete build log is located at '/var/log/portage/build/sci-physics/meep-1.3:20170827-023022.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/meep-1.3/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-physics/meep-1.3/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
 * S: '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
[32;01m * [39;49;00mPackage:    sci-physics/meep-1.3
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc examples guile hdf5 kernel_linux mpi userland_GNU
[32;01m * [39;49;00mFEATURES:   compressdebug installsources network-sandbox preserve-libs sandbox splitdebug test userpriv usersandbox
>>> Compiling source in /var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3 ...
make -j4 -l10 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
Making all in src
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
Making all in libctl
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/meep/meep.scm'"' -DVERSION_STRING='"'"Meep 1.3, Copyright (C) 2005-2015 Massachusetts Insitute of Technology."'"'  -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o meep_wrap.o meep_wrap.cxx
In file included from [01m[K/usr/include/guile/2.0/libguile.h:126:0[m[K,
                 from [01m[Kmeep_wrap.cxx:730[m[K:
[01m[Kmeep_wrap.cxx:[m[K In function '[01m[Kint SwigVector3_Check(SCM)[m[K':
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:475:32:[m[K [01;35m[Kwarning: [m[K'[01m[Kint scm_i_vectorp(SCM)[m[K' is deprecated [[01;35m[K-Wdeprecated-declarations[m[K]
 #define SCM_VECTORP(x)         [01;35m[Ks[m[Kcm_i_vectorp(x)
                                [01;35m[K^[m[K
[01m[Kmeep_wrap.cxx:1384:10:[m[K [01;36m[Knote: [m[Kin expansion of macro '[01m[KSCM_VECTORP[m[K'
   return [01;36m[KSCM_VECTORP[m[K(o) && SCM_VECTOR_LENGTH(o) == 3;
          [01;36m[K^~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:467:20:[m[K [01;36m[Knote: [m[Kdeclared here
 SCM_DEPRECATED int [01;36m[Kscm_i_vectorp[m[K (SCM x);
                    [01;36m[K^~~~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:475:47:[m[K [01;35m[Kwarning: [m[K'[01m[Kint scm_i_vectorp(SCM)[m[K' is deprecated [[01;35m[K-Wdeprecated-declarations[m[K]
 #define SCM_VECTORP(x)         scm_i_vectorp(x[01;35m[K)[m[K
                                               [01;35m[K^[m[K
[01m[Kmeep_wrap.cxx:1384:10:[m[K [01;36m[Knote: [m[Kin expansion of macro '[01m[KSCM_VECTORP[m[K'
   return [01;36m[KSCM_VECTORP[m[K(o) && SCM_VECTOR_LENGTH(o) == 3;
          [01;36m[K^~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:467:20:[m[K [01;36m[Knote: [m[Kdeclared here
 SCM_DEPRECATED int [01;36m[Kscm_i_vectorp[m[K (SCM x);
                    [01;36m[K^~~~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:476:32:[m[K [01;35m[Kwarning: [m[K'[01m[Klong unsigned int scm_i_vector_length(SCM)[m[K' is deprecated [[01;35m[K-Wdeprecated-declarations[m[K]
 #define SCM_VECTOR_LENGTH(x)   [01;35m[Ks[m[Kcm_i_vector_length(x)
                                [01;35m[K^[m[K
[01m[Kmeep_wrap.cxx:1384:28:[m[K [01;36m[Knote: [m[Kin expansion of macro '[01m[KSCM_VECTOR_LENGTH[m[K'
   return SCM_VECTORP(o) && [01;36m[KSCM_VECTOR_LENGTH[m[K(o) == 3;
                            [01;36m[K^~~~~~~~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:468:30:[m[K [01;36m[Knote: [m[Kdeclared here
 SCM_DEPRECATED unsigned long [01;36m[Kscm_i_vector_length[m[K (SCM x);
                              [01;36m[K^~~~~~~~~~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:476:53:[m[K [01;35m[Kwarning: [m[K'[01m[Klong unsigned int scm_i_vector_length(SCM)[m[K' is deprecated [[01;35m[K-Wdeprecated-declarations[m[K]
 #define SCM_VECTOR_LENGTH(x)   scm_i_vector_length(x[01;35m[K)[m[K
                                                     [01;35m[K^[m[K
[01m[Kmeep_wrap.cxx:1384:28:[m[K [01;36m[Knote: [m[Kin expansion of macro '[01m[KSCM_VECTOR_LENGTH[m[K'
   return SCM_VECTORP(o) && [01;36m[KSCM_VECTOR_LENGTH[m[K(o) == 3;
                            [01;36m[K^~~~~~~~~~~~~~~~~[m[K
[01m[K/usr/include/guile/2.0/libguile/deprecated.h:468:30:[m[K [01;36m[Knote: [m[Kdeclared here
 SCM_DEPRECATED unsigned long [01;36m[Kscm_i_vector_length[m[K (SCM x);
                              [01;36m[K^~~~~~~~~~~~~~~~~~~[m[K
/bin/sh ../libtool  --tag=CXX   --mode=link mpic++  -march=corei7-avx -pipe -Og -g -gdwarf-4  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o meep_mpi meep.o structure.o meep_wrap.o  main.o geom.o ctl-io.o ../src/libmeep_mpi.la -lctl -lguile-2.0 -lgc -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath   -lfftw3 -lm   -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath   -lfftw3 -lm   -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath
libtool: link: mpic++ -march=corei7-avx -pipe -Og -g -gdwarf-4 -Wl,-O1 -Wl,--hash-style=gnu -o meep_mpi meep.o structure.o meep_wrap.o main.o geom.o ctl-io.o  -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lctl -lguile-2.0 -lgc -L/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lhdf5 -lz /usr/lib64/libgsl.so /usr/lib64/libgslcblas.so /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm
make[3]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
Making all in tests
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
Making all in examples
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/examples'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/examples'
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
cp -f ./meep-pkgconfig meep_mpi.pc
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3'
>>> Source compiled.
>>> Test phase: sci-physics/meep-1.3
make -j4 -l10 -C tests pml CXXFLAGS=-O0 
make: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -O0 -c -o pml.o pml.cpp
/bin/sh ../libtool  --tag=CXX   --mode=link mpic++  -O0  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o pml pml.o ../src/libmeep_mpi.la -lhdf5 -lz -lgsl -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lharminv -lreflapack -lrefblas -lm -lgfortran -lm -lquadmath   -lfftw3 -lm   -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. -lfftw3 -lgfortran -lm -lquadmath
libtool: link: mpic++ -O0 -Wl,-O1 -Wl,--hash-style=gnu -o pml pml.o  -Wl,--as-needed ../src/.libs/libmeep_mpi.a -lhdf5 -lz /usr/lib64/libgsl.so -L/usr/lib64 /usr/lib64/libgslcblas.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/../../.. /usr/lib64/libharminv.so -lreflapack -lrefblas -lfftw3 -lgfortran /usr/lib/gcc/x86_64-pc-linux-gnu/6.4.0/libquadmath.so -lm
make: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
make -j4 -l10 check 
Making check in src
make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make  check-am
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/src'
Making check in libctl
make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make  check-am
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
make[1]: Leaving directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/libctl'
Making check in tests
make[1]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
make  aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml
make[2]: Entering directory '/var/tmp/portage/sci-physics/meep-1.3/work/meep-1.3/tests'
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o aniso_disp.o aniso_disp.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bench.o bench.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o bragg_transmission.o bragg_transmission.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o convergence_cyl_waveguide.o convergence_cyl_waveguide.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o cylindrical.o cylindrical.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o flux.o flux.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o harmonics.o harmonics.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o integrate.o integrate.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o known_results.o known_results.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o near2far.o near2far.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o one_dimensional.o one_dimensional.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o physical.o physical.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o stress_tensor.o stress_tensor.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o symmetry.o symmetry.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o three_d.o three_d.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o two_dimensional.o two_dimensional.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o 2D_convergence.o 2D_convergence.cpp
mpic++ -DHAVE_CONFIG_H -I. -I..  -I../src -pthread -I/usr/include/guile/2.0  -march=corei7-avx -pipe -Og -g -gdwarf-4 -c -o h5test.o h5test.cpp
make[2]: 'pml' is up to date.
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