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Gentoo's Bugzilla – Attachment 487748 Details for
Bug 626904
dev-util/coccinelle-1.0.6 : Error: I/O error: /.../pcre.cmi: Permission denied
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dev-util:coccinelle-1.0.6:20170802-165528.log
dev-util:coccinelle-1.0.6:20170802-165528.log (text/plain), 18.62 KB, created by
Toralf Förster
on 2017-08-02 17:27:51 UTC
(
hide
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Description:
dev-util:coccinelle-1.0.6:20170802-165528.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2017-08-02 17:27:51 UTC
Size:
18.62 KB
patch
obsolete
> * Package: dev-util/coccinelle-1.0.6 > * Repository: gentoo > * Maintainer: radhermit@gentoo.org ml@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux ocamlopt pcre python_targets_python2_7 userland_GNU > * FEATURES: network-sandbox preserve-libs userpriv >>>> Unpacking source... >>>> Unpacking coccinelle-1.0.6.tgz to /var/tmp/portage/dev-util/coccinelle-1.0.6/work >>>> Source unpacked in /var/tmp/portage/dev-util/coccinelle-1.0.6/work >>>> Preparing source in /var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6 ... >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/coccinelle-1.0.6 --htmldir=/usr/share/doc/coccinelle-1.0.6/html --libdir=/usr/lib64 --disable-python --disable-ocaml --enable-pcre --enable-pcre-syntax --enable-opt >configure: loading site script /usr/share/config.site >configure: configuring coccinelle 1.0.6 in /var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6 >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >configure: determining version suffix >checking for x86_64-pc-linux-gnu-date... no >checking for date... /bin/date >configure: version suffix set to Wed, 02 Aug 2017 18:55:31 +0200 >configure: this configure program uses pkg-config m4 macros >configure: this configure program uses ocaml m4 macros (see setup/ocaml.m4) >configure: this configure program uses custom m4 macros (see setup/cocci.m4) >configure: some fake substitutions for required but unavailable programs may be used (see setup/fake*) >configure: verifying basic tools >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for bash... /bin/sh >checking for tar... /bin/tar >checking for patch... /usr/bin/patch >checking for echo... /bin/echo >checking for patchelf... no >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for x86_64-pc-linux-gnu-ocamlc... no >checking for ocamlc... /usr/bin/ocamlc >OCaml version is 4.05.0 >OCaml library path is /usr/lib64/ocaml >checking for x86_64-pc-linux-gnu-ocamlopt... no >checking for ocamlopt... /usr/bin/ocamlopt >checking for x86_64-pc-linux-gnu-ocamlc.opt... no >checking for ocamlc.opt... /usr/bin/ocamlc.opt >checking for x86_64-pc-linux-gnu-ocamlopt.opt... no >checking for ocamlopt.opt... /usr/bin/ocamlopt.opt >checking for x86_64-pc-linux-gnu-ocaml... no >checking for ocaml... /usr/bin/ocaml >checking for x86_64-pc-linux-gnu-ocamldep... no >checking for ocamldep... /usr/bin/ocamldep >checking for x86_64-pc-linux-gnu-ocamlmktop... no >checking for ocamlmktop... /usr/bin/ocamlmktop >checking for x86_64-pc-linux-gnu-ocamlmklib... no >checking for ocamlmklib... /usr/bin/ocamlmklib >checking for x86_64-pc-linux-gnu-ocamldoc... no >checking for ocamldoc... /usr/bin/ocamldoc >checking that the OCaml version is at least 3.12... yes >checking that the OCaml version is at least 4.02... yes >checking for x86_64-pc-linux-gnu-ocamllex... no >checking for ocamllex... /usr/bin/ocamllex >checking for x86_64-pc-linux-gnu-ocamllex.opt... no >checking for ocamllex.opt... /usr/bin/ocamllex.opt >checking for x86_64-pc-linux-gnu-ocamlyacc... no >checking for ocamlyacc... /usr/bin/ocamlyacc >checking for x86_64-pc-linux-gnu-ocamlfind... no >checking for ocamlfind... /usr/bin/ocamlfind >checking for x86_64-pc-linux-gnu-ocamlprof... no >checking for ocamlprof... /usr/bin/ocamlprof >configure: verifying basic ocaml modules >configure: coccinelle may use external ocaml libraries in /var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/bundles >configure: the following OCaml packages should be provided by your ocaml installation >checking for OCaml findlib package unix... found >checking for OCaml findlib package bigarray... found >checking for OCaml findlib package num... found >checking for OCaml findlib package str... found >configure: configuring package dynlink >checking for OCaml findlib package dynlink... found >configure: configuring package parmap >checking for OCaml findlib package parmap... found >configure: verifying optional features >checking for x86_64-pc-linux-gnu-menhir... no >checking for menhir... /usr/bin/menhir >configure: system menhir will be used >configure: system menhir will be used >checking for PCRE... yes >configure: configuring package pcre >checking for OCaml findlib package pcre... found >configure: support for pcre syntax is enabled >checking for x86_64-pc-linux-gnu-pdflatex... no >checking for pdflatex... /usr/bin/pdflatex >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile.config >config.status: creating version.ml >config.status: creating commons/commands.ml >config.status: creating globals/config.ml >config.status: creating globals/regexp.ml >config.status: creating python/pycocci.ml >config.status: creating ocaml/prepare_ocamlcocci.ml >config.status: creating scripts/spatch.sh >config.status: creating tools/spgen/scripts/spgen.sh >config.status: creating docs/spatch.1 >config.status: creating setup/Makefile >config.status: executing depfiles commands >configure: configuration completed >------------------------------------------------------------------------------ >Summary > >configure flags: --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/coccinelle-1.0.6 --htmldir=/usr/share/doc/coccinelle-1.0.6/html --libdir=/usr/lib64 --disable-python --disable-ocaml --enable-pcre --enable-pcre-syntax --enable-opt >findlib: /usr/bin/ocamlfind (an actual version is strongly recommended) >menhir: /usr/bin/menhir (for local package use --without-menhir, install the menhir package otherwise) > >ocaml scripting: no (overridable with --enable-ocaml) >python scripting: no (overridable with --enable-python) > >pcre regexes: yes (overridable with --enable-pcre-syntax) >pcre module: yes (for local package use --disable-pcre) >pcre library: yes (requires the libpcre-ocaml-dev package) > >optimized spatch: yes (overridable with --disable-opt) > >------------------------------------------------------------------------------ >Coccinelle can now be compiled and installed. > > >If you compile coccinelle again after source code changes or >configuration changes, you may need to run first: > $ make clean > >To compile coccinelle, run: > $ make > >To install coccinelle, run: > $ make install > >Then, to test coccinelle, run for example: > $ spatch -sp_file demos/simple.cocci demos/simple.c -o /tmp/new_simple.c > >Or when coccinelle is not installed yet: > $ COCCINELLE_HOME=/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6 ./scripts/spatch -sp_file demos/simple.cocci demos/simple.c -o /tmp/new_simple.c >------------------------------------------------------------------------------ >>>> Source configured. >>>> Compiling source in /var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6 ... >make -j1 depend >Constructing '.depend' >set -e; for i in commons globals ctl parsing_cocci parsing_c ocaml python engine popl09 extra tools/spgen; do echo $i; make -C $i depend; done >commons >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >/usr/bin/ocamldep -I ocamlextra common.mli objet.mli ocollection.mli ograph_extended.mli ograph_simple.mli commands.ml common.ml ograph_simple.ml ograph_extended.ml > .depend >for i in ocamlextra; do /usr/bin/ocamldep -I ocamlextra $i/*.ml $i/*.mli >> .depend; done >/usr/bin/ocamldep -I ocamlextra common.mli objet.mli ocollection.mli ograph_extended.mli ograph_simple.mli commands.ml common.ml ograph_simple.ml ograph_extended.ml > .depend >for i in ocamlextra; do /usr/bin/ocamldep -I ocamlextra $i/*.ml $i/*.mli >> .depend; done >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >globals >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >/usr/bin/ocamldep -I ../commons -I /usr/lib64/ocaml/pcre *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I /usr/lib64/ocaml/pcre *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >ctl >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/ctl' >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/ctl' >parsing_cocci >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/parsing_cocci' >/usr/bin/menhir --ocamlc "/usr/bin/ocamlc.opt" --ocamldep "/usr/bin/ocamldep" --table --base parser_cocci_menhir parser_cocci_menhir.mly >Warning: you are using the standard library and/or the %inline keyword. We >recommend switching on --infer in order to avoid obscure type error messages. >/usr/bin/ocamldep *.mli *.ml > .depend >/usr/bin/ocamldep *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/parsing_cocci' >parsing_c >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/parsing_c' >/usr/bin/ocamllex.opt lexer_c.mll >549 states, 26116 transitions, table size 107758 bytes >15973 additional bytes used for bindings >/usr/bin/ocamlyacc -v parser_c.mly >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_cocci *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_cocci *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/parsing_c' >ocaml >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/ocaml' >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_cocci -I ../parsing_c -I ../engine *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_cocci -I ../parsing_c -I ../engine *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/ocaml' >python >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/python' >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_c -I ../parsing_cocci -I ../ocaml *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../parsing_c -I ../parsing_cocci -I ../ocaml *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/python' >engine >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/engine' >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../ctl -I ../parsing_cocci -I ../parsing_c -I ../ocaml -I ../python *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../commons/ocamlextra -I ../globals -I ../ctl -I ../parsing_cocci -I ../parsing_c -I ../ocaml -I ../python *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/engine' >popl09 >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/popl09' >/usr/bin/ocamldep -I ../commons -I ../globals -I ../ctl -I ../parsing_cocci -I ../parsing_c -I ../engine *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../globals -I ../ctl -I ../parsing_cocci -I ../parsing_c -I ../engine *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/popl09' >extra >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/extra' >/usr/bin/ocamldep -I ../commons -I ../globals -I ../parsing_cocci -I ../parsing_c *.mli *.ml > .depend >/usr/bin/ocamldep -I ../commons -I ../globals -I ../parsing_cocci -I ../parsing_c *.mli *.ml > .depend >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/extra' >tools/spgen >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/tools/spgen' >make -C source depend >make[2]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/tools/spgen/source' >/usr/bin/ocamllex.opt spgen_lexer.mll >143 states, 8123 transitions, table size 33350 bytes >23641 additional bytes used for bindings >/usr/bin/ocamldep *.mli *.ml > .depend >make[2]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/tools/spgen/source' >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/tools/spgen' >/usr/bin/ocamldep -I commons -I commons/ocamlextra -I globals -I ctl -I parsing_cocci -I parsing_c -I ocaml -I python -I engine -I popl09 -I extra cocci.mli testing.mli flag_cocci.ml cocci.ml testing.ml read_options.ml main.ml > .depend >make -j1 all.opt >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[1]: '.depend' is up to date. >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make opt-only >make[1]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make .depend >make[2]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[2]: '.depend' is up to date. >make[2]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make subdirs.opt BUILD_OPT=yes >make[2]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[3]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[4]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >make[5]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >/usr/bin/ocamlc.opt -unsafe -I ocamlextra -c ocamlextra/dumper.mli >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -c ocamlextra/dumper.ml >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -c commands.ml >/usr/bin/ocamlc.opt -unsafe -I ocamlextra -c common.mli >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -c common.ml >File "common.ml", line 2211, characters 16-32: >Warning 3: deprecated: String.lowercase >Use String.lowercase_ascii instead. >/usr/bin/ocamlc.opt -unsafe -I ocamlextra -c ograph_simple.mli >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -c ograph_simple.ml >/usr/bin/ocamlc.opt -unsafe -I ocamlextra -c ograph_extended.mli >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -c ograph_extended.ml >/usr/bin/ocamlopt.opt -unsafe -I ocamlextra -a -o commons.cmxa ocamlextra/dumper.cmx commands.cmx common.cmx ograph_simple.cmx ograph_extended.cmx >make[5]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >make[4]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/commons' >make[3]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[3]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[4]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >make[5]: Entering directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >/usr/bin/ocamlopt.opt -unsafe -I ../commons -I /usr/lib64/ocaml/pcre -c config.ml >/usr/bin/ocamlopt.opt -unsafe -I ../commons -I /usr/lib64/ocaml/pcre -c flag.ml >/usr/bin/ocamlc.opt -unsafe -I ../commons -I /usr/lib64/ocaml/pcre -c iteration.mli >/usr/bin/ocamlopt.opt -unsafe -I ../commons -I /usr/lib64/ocaml/pcre -c iteration.ml >/usr/bin/ocamlc.opt -unsafe -I ../commons -I /usr/lib64/ocaml/pcre -c /usr/lib64/ocaml/pcre/pcre.mli >File "/usr/lib64/ocaml/pcre/pcre.mli", line 1: >Error: I/O error: /usr/lib64/ocaml/pcre/pcre.cmi: Permission denied >make[5]: *** [Makefile:58: /usr/lib64/ocaml/pcre/pcre.cmi] Error 2 >make[5]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >make[4]: *** [Makefile:42: all.opt] Error 2 >make[4]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6/globals' >make[3]: *** [Makefile:187: globals.opt] Error 2 >make[3]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[2]: *** [Makefile:181: subdirs.opt] Error 1 >make[2]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make[1]: *** [Makefile:165: opt-compil] Error 2 >make[1]: Leaving directory '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' >make: *** [Makefile:153: all.opt] Error 2 > * ERROR: dev-util/coccinelle-1.0.6::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=dev-util/coccinelle-1.0.6::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-util/coccinelle-1.0.6::gentoo'`. > * The complete build log is located at '/var/log/portage/dev-util:coccinelle-1.0.6:20170802-165528.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-util/coccinelle-1.0.6/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-util/coccinelle-1.0.6/temp/environment'. > * Working directory: '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6' > * S: '/var/tmp/portage/dev-util/coccinelle-1.0.6/work/coccinelle-1.0.6'
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