sci-chemistry:avogadro-1.1.1:20170718-103926.log

sci-chemistry:avogadro-1.1.1:20170718-103926.log (text/plain), 7.61 KB, created by Toralf Förster on 2017-07-18 16:58:16 UTC

 * Package:    sci-chemistry/avogadro-1.1.1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 cpu_flags_x86_sse2 elibc_glibc glsl kernel_linux python_targets_python2_7 userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking avogadro-1.1.1.tar.bz2 to /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 ...
 * Applying avogadro-1.1.0-xlibs.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-eigen3.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-mkspecs-dir.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-no-strip.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-pkgconfig_eigen.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-openbabel.patch ...
 [ ok ]
 * Applying avogadro-1.1.1-boost-join-moc.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build"
cmake -C /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_THREADEDGL=OFF -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DQT_MKSPECS_DIR=/usr/share/qt4/mkspecs -DQT_MKSPECS_RELATIVE=share/qt4/mkspecs -DENABLE_glsl=yes -DENABLE_TESTS=no -DWITH_SSE2=yes -DENABLE_python=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1
loading initial cache file /var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 6.3.0
-- The CXX compiler identification is GNU 6.3.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The build type is Gentoo
-- Performing Test HAVE_NO_RTTI
-- Performing Test HAVE_NO_RTTI - Success
-- Performing Test HAVE_RTTI
-- Performing Test HAVE_RTTI - Success
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH):
  math cannot parse the expression: "x86_646*10000 + x86_643*100 + x86_640":
  syntax error, unexpected exp_NUMBER, expecting $end (8)
Call Stack (most recent call first):
  cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION)
  CMakeLists.txt:98 (macro_ensure_version)


CMake Error at cmake/modules/MacroEnsureVersion.cmake:76 (MATH):
  math cannot parse the expression: "x86_646*10000 + x86_643*100 + x86_640":
  syntax error, unexpected exp_NUMBER, expecting $end (8)
Call Stack (most recent call first):
  cmake/modules/MacroEnsureVersion.cmake:95 (NORMALIZE_VERSION)
  CMakeLists.txt:99 (macro_ensure_version)


-- Performing Test COMPILES_WITHOUT_FPERMISSIVE
-- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed
-- Enabling the SSE2 instruction set
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found
-- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0") 
-- Found OpenGL: /usr/lib/libGL.so  
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so
-- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib/libX11.so
-- Found lupdate: /usr/bin/lupdate
-- Found lrelease: /usr/bin/lrelease
-- Found lconvert: /usr/bin/lconvert
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") 
-- Found PkgConfig: x86_64-pc-linux-gnu-pkg-config (found version "0.29.2") 
-- Checking for module 'openbabel-2.0>=2.3.0'
--   Found openbabel-2.0, version 2.4.1
-- Found OpenBabel 2.3 or later: openbabel
-- Found OpenBabel2 executable: /usr/bin/babel
-- Found Git revision is: 
-- Building released version.
-- Searching for python dependencies...
-- [1/5] Boost Python
-- Could NOT find Boost
-- Boost Python NOT found - Python support disabled.
CMake Warning at CMakeLists.txt:280 (message):
  Not all python dependencies are found - Python support diabled


-- Threaded OpenGL rendering not enabled
-- Found Qt4: /usr/lib64/qt4/bin/qmake (found suitable version "4.8.7", minimum required is "4.6") 
-- Linking in static plugins: bsdyengine;navigatetool;elementcolor
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- docbook tools not found, doc targets disabled
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -O2 -pipe -march=native -Wall
C++             -Werror=terminate -O2 -pipe -march=native -fpermissive -msse2
Linker flags:
Executable      -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
Module          -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed
Shared          -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-O1 -Wl,--as-needed

-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build/CMakeFiles/CMakeError.log".
 * ERROR: sci-chemistry/avogadro-1.1.1::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  115:  Called src_configure
 *   environment, line 4050:  Called cmake-utils_src_configure
 *   environment, line 1091:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/avogadro-1.1.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/avogadro-1.1.1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:avogadro-1.1.1:20170718-103926.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1_build'
 * S: '/var/tmp/portage/sci-chemistry/avogadro-1.1.1/work/avogadro-1.1.1'