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Gentoo's Bugzilla – Attachment 485374 Details for
Bug 625502
sci-biology/meme fails tests ( FAIL: dreme1,dreme2,fasta-center1 ... )
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build.log
meme-4.11.2_p2:20170718-080339.log (text/plain), 230.93 KB, created by
Kent Fredric (IRC: kent\n) (RETIRED)
on 2017-07-18 11:57:37 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Kent Fredric (IRC: kent\n) (RETIRED)
Created:
2017-07-18 11:57:37 UTC
Size:
230.93 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-biology/meme-4.11.2_p2 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci-biology@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox test userpriv usersandbox >>>> Unpacking source... >>>> Unpacking meme_4.11.2.tar.gz to /var/tmp/portage/sci-biology/meme-4.11.2_p2/work >>>> Source unpacked in /var/tmp/portage/sci-biology/meme-4.11.2_p2/work >>>> Preparing source in /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2 ... > [32;01m*[0m Applying meme-4.11.2_p2-patch1.patch ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying meme-4.11.2_p2-patch2.patch ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying meme-4.11.2_p2-fix-build-system.patch ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' ... > [32;01m*[0m Running libtoolize --install --copy --force --automake ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf --force ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --force-missing ... >[A[269C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: meme_4.11.2/ > [32;01m*[0m Running elibtoolize in: meme_4.11.2/config/ > [32;01m*[0m Applying portage/1.2.0 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/2.4.3 patch ... > [32;01m*[0m Running elibtoolize in: meme_4.11.2/src/libxml2/ > [32;01m*[0m Applying portage/1.5.10 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/1.5 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2 ... > * econf: updating meme_4.11.2/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating meme_4.11.2/config/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/meme-4.11.2_p2 --htmldir=/usr/share/doc/meme-4.11.2_p2/html --libdir=/usr/lib64 --sysconfdir=/etc/meme --with-logs=/var/log/meme --with-perl=perl --with-convert=convert --with-gs=gs --disable-build-libxml2 --disable-build-libxslt --disable-debug --disable-doc --disable-examples --enable-serial --with-perl-dir=/lib64/perl5/vendor_perl/5.26.0 PYTHON=python2.7 >checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking whether make sets $(MAKE)... (cached) yes >checking for ld... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking for sed... (cached) /bin/sed >checking for sendmail... /usr/sbin/sendmail >checking for perl... /usr/bin/perl >checking for python... /var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python >checking for convert... /usr/bin/convert >checking for gs... /usr/bin/gs >checking for xml2-config... /usr/bin/xml2-config >checking for xslt-config... /usr/bin/xslt-config >checking for ant... /usr/bin/ant >checking for isnan, sqrt, log, exp, fabs, pow, floor, ceil in -lm... yes >checking for compress in -lz... yes >checking for ANSI C header files... (cached) yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for an ANSI C-conforming const... yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for pid_t... yes >checking for size_t... yes >checking vfork.h usability... no >checking vfork.h presence... no >checking for vfork.h... no >checking for fork... yes >checking for vfork... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking return type of signal handlers... void >checking whether lstat correctly handles trailing slash... yes >checking whether stat accepts an empty string... no >checking for floor... yes >checking for getcwd... yes >checking for gethostbyname... yes >checking for isascii... yes >checking for memset... yes >checking for pow... yes >checking for rint... yes >checking for socket... yes >checking for sqrt... yes >checking for strchr... yes >checking for strcspn... yes >checking for strdup... yes >checking for strspn... yes >checking for strstr... yes >checking for strlcpy... no >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking for mpicc... no >checking for openmpicc... no >checking for mpcc... no >checking for mpirun... no >checking for openmpirun... no >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for LIBXML2... yes >checking for LIBXSLT... yes >checking for LIBEXSLT... yes >checking for python version... 2.7 >checking for python platform... linux2 >checking for python script directory... ${prefix}/lib64/python2.7/site-packages >checking for python extension module directory... ${exec_prefix}/lib64/python2.7/site-packages >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating doc/Makefile >config.status: creating doc/css/Makefile >config.status: creating doc/examples/Makefile >config.status: creating doc/examples/compute_prior_dist_example_output_files/Makefile >config.status: creating doc/examples/sample_opal_scripts/Makefile >config.status: creating doc/images/Makefile >config.status: creating doc/js/Makefile >config.status: creating etc/Makefile >config.status: creating src/filters/Makefile >config.status: creating src/filters/purge/Makefile >config.status: creating src/filters/dust/Makefile >config.status: creating scripts/Makefile >config.status: creating src/Makefile >config.status: creating src/libxml2/Makefile >config.status: creating src/libxml2/include/Makefile >config.status: creating src/libxml2/include/libxml/Makefile >config.status: creating src/libxslt/Makefile >config.status: creating src/libexslt/Makefile >config.status: creating src/parallel/Makefile >config.status: creating tests/Makefile >config.status: creating tests/ame/Makefile >config.status: creating tests/centrimo/Makefile >config.status: creating tests/clustalw2fasta/Makefile >config.status: creating tests/common/Makefile >config.status: creating tests/common/motif.crp0/Makefile >config.status: creating tests/common/motif.Puf3p/Makefile >config.status: creating tests/create-priors/Makefile >config.status: creating tests/draw-mhmm/Makefile >config.status: creating tests/dreme/Makefile >config.status: creating tests/fasta-center/Makefile >config.status: creating tests/fimo/Makefile >config.status: creating tests/glam2/Makefile >config.status: creating tests/glam2scan/Makefile >config.status: creating tests/gomo/Makefile >config.status: creating tests/mast/Makefile >config.status: creating tests/mcast/Makefile >config.status: creating tests/meme/Makefile >config.status: creating tests/mhmm/Makefile >config.status: creating tests/mhmms/Makefile >config.status: creating tests/mhmmscan/Makefile >config.status: creating tests/motiph/Makefile >config.status: creating tests/psp-gen/Makefile >config.status: creating tests/qvalue/Makefile >config.status: creating tests/scaffold/Makefile >config.status: creating tests/spamo/Makefile >config.status: creating tests/scripts/Makefile >config.status: creating tests/tomtom/Makefile >config.status: creating tests/web/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >configure: WARNING: Neither Ghostscript or convert utilities were found. Png images won''t be generated from encapsulated postscript. >configure: All required and optional Perl modules were found. > > ======================== > Configuration parameters > ======================== > > Install path (prefix): /usr > Install UID: > Version: 4.11.2 > C compiler (CC): x86_64-pc-linux-gnu-gcc > C compiler flags (CFLAGS): -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe > C preproc flags (CPPFLAGS): -DUNIX -D__USE_FIXED_PROTOTYPES__ > Linker (LD): /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 > Linker flags (LDFLAGS): -Wl,-O1 -Wl,--as-needed > Special Libs (LIBS): -lz -lm > MPICC x86_64-pc-linux-gnu-gcc > MPIRUN > MPI_CMD > MPIINC > MPILIBDIR > MPIFLAGS > MEME URL: > PREVIOUS VERSION URL: > SERVER CONTACT: > DEVELOPER CONTACT: meme-suite@uw.edu > GO-SERVER URL: http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID > PERL: perl > PYTHON: /var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python > CONVERT: convert > GHOSTSCRIPT: gs > BUILD LIBXML2: > LIBXML2 compiler flags: -I/usr/include/libxml2 > LIBXML2 libs: -lxml2 > BUILD LIBXSLT: > LIBXSLT compiler flags: -I/usr/include/libxml2 > LIBXSLT libs: -lxslt -lz -ldl -lm -lxml2 > MEME DB: ${prefix}/db > MEME LOGS: /var/log/meme > MEME TEMP FILES: > OPAL URL: no > OPAL DEPLOY DIRECTORY: > > Run the following commands to compile, test and install meme: > make > make test > make install >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2 ... >make -j3 >/bin/sed -e 's%@catalina.home@%%' -e 's%@version@%4.11.2%' -e 's%@site.url@%%' -e 's%@site.services@%no%' -e 's%@site.DN@%%' -e 's%@site.contact@%%' -e 's%@developer.contact@%meme-suite@uw.edu%' -e 's%@expiry@%4%' -e 's%@bin.dir@%/usr/bin%' -e 's%@etc.dir@%/etc/meme%' -e 's%@lib.dir@%/usr/lib64%' -e 's%@db.dir@%/usr/db%' -e 's%@sendmail@%/usr/sbin/sendmail%' -e 's%@quota@%%' MemeSuite.properties.in > MemeSuite.properties >make all-recursive >make[1]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' >Making all in src >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >echo '#define MEME_DIR "/usr"' >dir.h >echo '#define ETC_DIR "/etc/meme" ' >> dir.h >echo '#define REVISION "05f067b1c0a726a532a626d82e471844a3a40f54"' > projrel.h >echo '#define BIN_DIR "/usr/bin" ' >> dir.h >echo '#define ARCHIVE_DATE "Thu May 05 14:58:55 2016 -0700"' >> projrel.h >echo '#define TEMP_DIR "" ' >> dir.h >make all-recursive >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >Making all in filters >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters' >Making all in purge >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters/purge' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o afnio.o afnio.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o alphabet.o alphabet.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o block.o block.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o dheap.o dheap.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o gblast.o gblast.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o karlin.o karlin.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o mheap.o mheap.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o mlist.o mlist.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o pairaln.o pairaln.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o pmain.o pmain.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o purge.o purge.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o random.o random.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o seqset.o seqset.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o sequence.o sequence.c >/bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -lm -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o purge afnio.o alphabet.o block.o dheap.o gblast.o karlin.o mheap.o mlist.o pairaln.o pmain.o purge.o random.o seqset.o sequence.o -Wl,--as-needed -lz -lm >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters/purge' >Making all in dust >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters/dust' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o tust.o tust.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o dust.o dust.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o getfa.o getfa.c >/bin/sh ../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o dust tust.o dust.o getfa.o -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o dust tust.o dust.o getfa.o -Wl,--as-needed -lz -lm >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters/dust' >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters' >make[5]: Nothing to be done for 'all-am'. >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters' >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/filters' >Making all in . >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused 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-I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c alignment.c -fPIC -DPIC -o .libs/libcommon_la-alignment.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c alph-in.c -fPIC -DPIC -o .libs/libcommon_la-alph-in.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c alphabet.c -fPIC -DPIC -o .libs/libcommon_la-alphabet.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c alignment.c -o libcommon_la-alignment.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c alph-in.c -o libcommon_la-alph-in.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-array.lo `test -f 'array.c' || echo './'`array.c >[01m[Kalphabet.c:[m[K In function â[01m[Kextrapolate_markov_model[m[Kâ: >[01m[Kalphabet.c:1069:18:[m[K [01;35m[Kwarning: [m[Kâ[01m[Kindex_word[m[Kâ may be used uninitialized in this function [-Wmaybe-uninitialized] > index_word -= 1; >[01;32m[K ^[m[K >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c array.c -fPIC -DPIC -o .libs/libcommon_la-array.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-array-list.lo `test -f 'array-list.c' || echo './'`array-list.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c 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-mtune=native -O2 -pipe -c binomial.c -fPIC -DPIC -o .libs/libcommon_la-binomial.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c binomial.c -o libcommon_la-binomial.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c build-hmm.c -fPIC -DPIC -o .libs/libcommon_la-build-hmm.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-buffer.lo `test -f 'buffer.c' || echo './'`buffer.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-ceqlogo.lo `test -f 'ceqlogo.c' || echo './'`ceqlogo.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c ceqlogo.c -fPIC -DPIC -o .libs/libcommon_la-ceqlogo.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c buffer.c -fPIC -DPIC -o .libs/libcommon_la-buffer.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c ceqlogo.c -o libcommon_la-ceqlogo.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c buffer.c -o libcommon_la-buffer.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c build-hmm.c -o libcommon_la-build-hmm.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-cisml.lo `test -f 'cisml.c' || echo './'`cisml.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-cisml-sax.lo `test -f 'cisml-sax.c' || echo './'`cisml-sax.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c 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libcommon_la-dp.lo `test -f 'dp.c' || echo './'`dp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c dp.c -fPIC -DPIC -o .libs/libcommon_la-dp.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-dreme-sax.lo `test -f 'dreme-sax.c' || echo './'`dreme-sax.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c dreme-sax.c -fPIC -DPIC -o .libs/libcommon_la-dreme-sax.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c cisml.c -o libcommon_la-cisml.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c dp.c -o libcommon_la-dp.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c dreme-sax.c -o libcommon_la-dreme-sax.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-eps2png.lo `test -f 'eps2png.c' || echo './'`eps2png.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c eps2png.c -fPIC -DPIC -o .libs/libcommon_la-eps2png.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c eps2png.c -o libcommon_la-eps2png.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-empirical-qvalue.lo `test -f 'empirical-qvalue.c' || echo './'`empirical-qvalue.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-evomodel.lo `test -f 'evomodel.c' || echo './'`evomodel.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-fasta-io.lo `test -f 'fasta-io.c' || echo './'`fasta-io.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c empirical-qvalue.c -fPIC -DPIC -o .libs/libcommon_la-empirical-qvalue.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c evomodel.c -fPIC -DPIC -o .libs/libcommon_la-evomodel.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c empirical-qvalue.c -o libcommon_la-empirical-qvalue.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c fasta-io.c -fPIC -DPIC -o .libs/libcommon_la-fasta-io.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-fitevd.lo `test -f 'fitevd.c' || echo './'`fitevd.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c fasta-io.c -o libcommon_la-fasta-io.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c fitevd.c -fPIC -DPIC -o .libs/libcommon_la-fitevd.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c evomodel.c -o libcommon_la-evomodel.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-gendb.lo `test -f 'gendb.c' || echo './'`gendb.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c gendb.c -fPIC -DPIC -o .libs/libcommon_la-gendb.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c gendb.c -o libcommon_la-gendb.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-hash_table.lo `test -f 'hash_table.c' || echo './'`hash_table.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c fitevd.c -o libcommon_la-fitevd.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c hash_table.c -fPIC -DPIC -o .libs/libcommon_la-hash_table.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-heap.lo `test -f 'heap.c' || echo './'`heap.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c hash_table.c -o libcommon_la-hash_table.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c heap.c -fPIC -DPIC -o .libs/libcommon_la-heap.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-html-data.lo `test -f 'html-data.c' || echo './'`html-data.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c heap.c -o libcommon_la-heap.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c html-data.c -fPIC -DPIC -o .libs/libcommon_la-html-data.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-html-monolith.lo `test -f 'html-monolith.c' || echo './'`html-monolith.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-io.lo `test -f 'io.c' || echo './'`io.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c html-monolith.c -fPIC -DPIC -o .libs/libcommon_la-html-monolith.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c html-data.c -o libcommon_la-html-data.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c html-monolith.c -o libcommon_la-html-monolith.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c io.c -fPIC -DPIC -o .libs/libcommon_la-io.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c io.c -o libcommon_la-io.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-json-checker.lo `test -f 'json-checker.c' || echo './'`json-checker.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-json-reader.lo `test -f 'json-reader.c' || echo './'`json-reader.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-checker.c -fPIC -DPIC -o .libs/libcommon_la-json-checker.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-reader.c -fPIC -DPIC -o .libs/libcommon_la-json-reader.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-json-writer.lo `test -f 'json-writer.c' || echo './'`json-writer.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-writer.c -fPIC -DPIC -o .libs/libcommon_la-json-writer.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-checker.c -o libcommon_la-json-checker.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-reader.c -o libcommon_la-json-reader.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c json-writer.c -o libcommon_la-json-writer.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-karlin.lo `test -f 'karlin.c' || echo './'`karlin.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c karlin.c -fPIC -DPIC -o .libs/libcommon_la-karlin.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-linked-list.lo `test -f 'linked-list.c' || echo './'`linked-list.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-log-hmm.lo `test -f 'log-hmm.c' || echo './'`log-hmm.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c karlin.c -o libcommon_la-karlin.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c linked-list.c -fPIC -DPIC -o .libs/libcommon_la-linked-list.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c log-hmm.c -fPIC -DPIC -o .libs/libcommon_la-log-hmm.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c linked-list.c -o libcommon_la-linked-list.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-logodds.lo `test -f 'logodds.c' || echo './'`logodds.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c log-hmm.c -o libcommon_la-log-hmm.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mast-util.lo `test -f 'mast-util.c' || echo './'`mast-util.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mast-util.c -fPIC -DPIC -o .libs/libcommon_la-mast-util.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c logodds.c -fPIC -DPIC -o .libs/libcommon_la-logodds.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-match.lo `test -f 'match.c' || echo './'`match.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c match.c -fPIC -DPIC -o .libs/libcommon_la-match.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c logodds.c -o libcommon_la-logodds.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mast-util.c -o libcommon_la-mast-util.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c match.c -o libcommon_la-match.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-matrix.lo `test -f 'matrix.c' || echo './'`matrix.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mcast-match.lo `test -f 'mcast-match.c' || echo './'`mcast-match.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c matrix.c -fPIC -DPIC -o .libs/libcommon_la-matrix.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mcast-match.c -fPIC -DPIC -o .libs/libcommon_la-mcast-match.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-meme-sax.lo `test -f 'meme-sax.c' || echo './'`meme-sax.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c meme-sax.c -fPIC -DPIC -o .libs/libcommon_la-meme-sax.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c matrix.c -o libcommon_la-matrix.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mcast-match.c -o libcommon_la-mcast-match.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-metameme.lo `test -f 'metameme.c' || echo './'`metameme.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c metameme.c -fPIC -DPIC -o .libs/libcommon_la-metameme.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c meme-sax.c -o libcommon_la-meme-sax.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mhmm.lo `test -f 'mhmm.c' || echo './'`mhmm.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c metameme.c -o libcommon_la-metameme.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmm.c -fPIC -DPIC -o .libs/libcommon_la-mhmm.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mhmms.lo `test -f 'mhmms.c' || echo './'`mhmms.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmm.c -o libcommon_la-mhmm.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmms.c -fPIC -DPIC -o .libs/libcommon_la-mhmms.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mhmmscan.lo `test -f 'mhmmscan.c' || echo './'`mhmmscan.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mhmm-state.lo `test -f 'mhmm-state.c' || echo './'`mhmm-state.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmm-state.c -fPIC -DPIC -o .libs/libcommon_la-mhmm-state.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmmscan.c -fPIC -DPIC -o .libs/libcommon_la-mhmmscan.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmms.c -o libcommon_la-mhmms.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmm-state.c -o libcommon_la-mhmm-state.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in.lo `test -f 'motif-in.c' || echo './'`motif-in.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in.c -fPIC -DPIC -o .libs/libcommon_la-motif-in.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mhmmscan.c -o libcommon_la-mhmmscan.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in.c -o libcommon_la-motif-in.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-common.lo `test -f 'motif-in-common.c' || echo './'`motif-in-common.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-dreme-xml.lo `test -f 'motif-in-dreme-xml.c' || echo './'`motif-in-dreme-xml.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-common.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-common.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-common.c -o libcommon_la-motif-in-common.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-meme-html.lo `test -f 'motif-in-meme-html.c' || echo './'`motif-in-meme-html.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-meme-json.lo `test -f 'motif-in-meme-json.c' || echo './'`motif-in-meme-json.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-dreme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-dreme-xml.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-html.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-html.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-json.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-json.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-dreme-xml.c -o libcommon_la-motif-in-dreme-xml.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-html.c -o libcommon_la-motif-in-meme-html.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-json.c -o libcommon_la-motif-in-meme-json.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-meme-text.lo `test -f 'motif-in-meme-text.c' || echo './'`motif-in-meme-text.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-text.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-text.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif-in-meme-xml.lo `test -f 'motif-in-meme-xml.c' || echo './'`motif-in-meme-xml.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-xml.c -fPIC -DPIC -o .libs/libcommon_la-motif-in-meme-xml.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif.lo `test -f 'motif.c' || echo './'`motif.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif.c -fPIC -DPIC -o .libs/libcommon_la-motif.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-xml.c -o libcommon_la-motif-in-meme-xml.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif-in-meme-text.c -o libcommon_la-motif-in-meme-text.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif.c -o libcommon_la-motif.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motif_regexp.lo `test -f 'motif_regexp.c' || echo './'`motif_regexp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif_regexp.c -fPIC -DPIC -o .libs/libcommon_la-motif_regexp.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motifs.lo `test -f 'motifs.c' || echo './'`motifs.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motif_regexp.c -o libcommon_la-motif_regexp.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motifs.c -fPIC -DPIC -o .libs/libcommon_la-motifs.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-motiph-scoring.lo `test -f 'motiph-scoring.c' || echo './'`motiph-scoring.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-mtwist.lo `test -f 'mtwist.c' || echo './'`mtwist.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motiph-scoring.c -fPIC -DPIC -o .libs/libcommon_la-motiph-scoring.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motifs.c -o libcommon_la-motifs.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mtwist.c -fPIC -DPIC -o .libs/libcommon_la-mtwist.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-object-list.lo `test -f 'object-list.c' || echo './'`object-list.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c mtwist.c -o libcommon_la-mtwist.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c object-list.c -fPIC -DPIC -o .libs/libcommon_la-object-list.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c motiph-scoring.c -o libcommon_la-motiph-scoring.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c object-list.c -o libcommon_la-object-list.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-order.lo `test -f 'order.c' || echo './'`order.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c order.c -fPIC -DPIC -o .libs/libcommon_la-order.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-data-block.lo `test -f 'data-block.c' || echo './'`data-block.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c data-block.c -fPIC -DPIC -o .libs/libcommon_la-data-block.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c order.c -o libcommon_la-order.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-data-block-reader.lo `test -f 'data-block-reader.c' || echo './'`data-block-reader.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c data-block.c -o libcommon_la-data-block.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c data-block-reader.c -fPIC -DPIC -o .libs/libcommon_la-data-block-reader.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-parser-message.lo `test -f 'parser-message.c' || echo './'`parser-message.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-prior-reader-from-psp.lo `test -f 'prior-reader-from-psp.c' || echo './'`prior-reader-from-psp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-reader-from-psp.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-psp.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c data-block-reader.c -o libcommon_la-data-block-reader.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c parser-message.c -fPIC -DPIC -o .libs/libcommon_la-parser-message.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-prior-reader-from-wig.lo `test -f 'prior-reader-from-wig.c' || echo './'`prior-reader-from-wig.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-reader-from-psp.c -o libcommon_la-prior-reader-from-psp.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c parser-message.c -o libcommon_la-parser-message.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-prior-dist.lo `test -f 'prior-dist.c' || echo './'`prior-dist.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-reader-from-wig.c -fPIC -DPIC -o .libs/libcommon_la-prior-reader-from-wig.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-pssm.lo `test -f 'pssm.c' || echo './'`pssm.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-reader-from-wig.c -o libcommon_la-prior-reader-from-wig.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-dist.c -fPIC -DPIC -o .libs/libcommon_la-prior-dist.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c pssm.c -fPIC -DPIC -o .libs/libcommon_la-pssm.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c prior-dist.c -o libcommon_la-prior-dist.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-pssm-distr.lo `test -f 'pssm-distr.c' || echo './'`pssm-distr.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c pssm-distr.c -fPIC -DPIC -o .libs/libcommon_la-pssm-distr.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-qvalue.lo `test -f 'qvalue.c' || echo './'`qvalue.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c pssm-distr.c -o libcommon_la-pssm-distr.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c qvalue.c -fPIC -DPIC -o .libs/libcommon_la-qvalue.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-ranksum_test.lo `test -f 'ranksum_test.c' || echo './'`ranksum_test.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c pssm.c -o libcommon_la-pssm.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c 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-pipe -c ranksum_test.c -o libcommon_la-ranksum_test.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c rdb-matrix.c -fPIC -DPIC -o .libs/libcommon_la-rdb-matrix.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-read-mhmm.lo `test -f 'read-mhmm.c' || echo './'`read-mhmm.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-read_sequence.lo `test -f 'read_sequence.c' || echo './'`read_sequence.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c read-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-read-mhmm.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c rdb-matrix.c -o libcommon_la-rdb-matrix.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall 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-Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-red-black-tree.lo `test -f 'red-black-tree.c' || echo './'`red-black-tree.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-regex-utils.lo `test -f 'regex-utils.c' || echo './'`regex-utils.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c red-black-tree.c -fPIC -DPIC -o .libs/libcommon_la-red-black-tree.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-regress.lo `test -f 'regress.c' || echo './'`regress.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c regex-utils.c -fPIC -DPIC -o .libs/libcommon_la-regex-utils.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c red-black-tree.c -o libcommon_la-red-black-tree.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c regress.c -fPIC -DPIC -o .libs/libcommon_la-regress.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c regex-utils.c -o libcommon_la-regex-utils.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c regress.c -o libcommon_la-regress.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-reservoir.lo `test -f 'reservoir.c' || echo './'`reservoir.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c reservoir.c -fPIC -DPIC -o .libs/libcommon_la-reservoir.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-sax-parser-utils.lo `test -f 'sax-parser-utils.c' || echo './'`sax-parser-utils.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-scanned-sequence.lo `test -f 'scanned-sequence.c' || echo './'`scanned-sequence.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c reservoir.c -o libcommon_la-reservoir.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c sax-parser-utils.c -fPIC -DPIC -o .libs/libcommon_la-sax-parser-utils.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c scanned-sequence.c -fPIC -DPIC -o .libs/libcommon_la-scanned-sequence.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-scored-sites.lo `test -f 'scored-sites.c' || echo './'`scored-sites.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c scanned-sequence.c -o libcommon_la-scanned-sequence.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-seq.lo `test -f 'seq.c' || echo './'`seq.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c scored-sites.c -fPIC -DPIC -o .libs/libcommon_la-scored-sites.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c seq.c -fPIC -DPIC -o .libs/libcommon_la-seq.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c sax-parser-utils.c -o libcommon_la-sax-parser-utils.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c scored-sites.c -o libcommon_la-scored-sites.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c seq.c -o libcommon_la-seq.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-seq-reader-from-fasta.lo `test -f 'seq-reader-from-fasta.c' || echo './'`seq-reader-from-fasta.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-simple-getopt.lo `test -f 'simple-getopt.c' || echo './'`simple-getopt.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c seq-reader-from-fasta.c -fPIC -DPIC -o .libs/libcommon_la-seq-reader-from-fasta.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c simple-getopt.c -fPIC -DPIC -o .libs/libcommon_la-simple-getopt.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c simple-getopt.c -o libcommon_la-simple-getopt.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-spearman-rank-correlation.lo `test -f 'spearman-rank-correlation.c' || echo './'`spearman-rank-correlation.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-string-builder.lo `test -f 'string-builder.c' || echo './'`string-builder.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c spearman-rank-correlation.c -fPIC -DPIC -o .libs/libcommon_la-spearman-rank-correlation.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-builder.c -fPIC -DPIC -o .libs/libcommon_la-string-builder.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c seq-reader-from-fasta.c -o libcommon_la-seq-reader-from-fasta.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c spearman-rank-correlation.c -o libcommon_la-spearman-rank-correlation.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-builder.c -o libcommon_la-string-builder.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-string-list.lo `test -f 'string-list.c' || echo './'`string-list.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-string-match.lo `test -f 'string-match.c' || echo './'`string-match.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-list.c -fPIC -DPIC -o .libs/libcommon_la-string-list.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-match.c -fPIC -DPIC -o .libs/libcommon_la-string-match.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-subst-matrix.lo `test -f 'subst-matrix.c' || echo './'`subst-matrix.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-match.c -o libcommon_la-string-match.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c subst-matrix.c -fPIC -DPIC -o .libs/libcommon_la-subst-matrix.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c string-list.c -o libcommon_la-string-list.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c subst-matrix.c -o libcommon_la-subst-matrix.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-substmatrix-table.lo `test -f 'substmatrix-table.c' || echo './'`substmatrix-table.c >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-transfac.lo `test -f 'transfac.c' || echo './'`transfac.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c substmatrix-table.c -fPIC -DPIC -o .libs/libcommon_la-substmatrix-table.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c transfac.c -fPIC -DPIC -o .libs/libcommon_la-transfac.o >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-tree.lo `test -f 'tree.c' || echo './'`tree.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c substmatrix-table.c -o libcommon_la-substmatrix-table.o >/dev/null 2>&1 >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c tree.c -fPIC -DPIC -o .libs/libcommon_la-tree.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c transfac.c -o libcommon_la-transfac.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-utils.lo `test -f 'utils.c' || echo './'`utils.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c tree.c -o libcommon_la-tree.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-wiggle-reader.lo `test -f 'wiggle-reader.c' || echo './'`wiggle-reader.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c utils.c -fPIC -DPIC -o .libs/libcommon_la-utils.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c wiggle-reader.c -fPIC -DPIC -o .libs/libcommon_la-wiggle-reader.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c wiggle-reader.c -o libcommon_la-wiggle-reader.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-write-mhmm.lo `test -f 'write-mhmm.c' || echo './'`write-mhmm.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c utils.c -o libcommon_la-utils.o >/dev/null 2>&1 >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o libcommon_la-xlate-in.lo `test -f 'xlate-in.c' || echo './'`xlate-in.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c write-mhmm.c -fPIC -DPIC -o .libs/libcommon_la-write-mhmm.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c xlate-in.c -fPIC -DPIC -o .libs/libcommon_la-xlate-in.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -fno-strict-aliasing -I/usr/include/libxml2 -I/usr/include/libxml2 -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe 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-lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o motif-shuffle-columns motif_shuffle_columns-motif-shuffle-columns.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o pmp_bf pmp_bf-pmp_bf.o libcommon.la -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o motiph motiph-motiph.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o ramen ramen-ramen.o ramen-ramen_scan.o libcommon.la -lxml2 -lm -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o libcommon.la -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMOTIPH -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o pmp_bf pmp_bf-pmp_bf.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o ramen ramen-ramen.o ramen-ramen_scan.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o spamo spamo-cisml-sax.o spamo-spamo.o spamo-spamo-matches.o spamo-spamo-output.o spamo-spamo-scan.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o tomtom tomtom-tomtom.o libcommon.la -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o qvalue qvalue-qvalue.o libcommon.la -lm -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o ranksum_test ranksum_test-ranksum_test.o libcommon.la -lm -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -I/usr/include/libxml2 -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o tomtom tomtom-tomtom.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o libcommon.la -lm -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o qvalue qvalue-qvalue.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o ranksum_test ranksum_test-ranksum_test.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o reduce-alignment reduce_alignment-reduce-alignment.o libcommon.la -lm -lz -lm >/bin/sh ../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o libcommon.la -lm -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o reconcile-tree-alignment reconcile_tree_alignment-reconcile-tree-alignment.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o reduce-alignment reduce_alignment-reduce-alignment.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -DMAIN -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o remove-alignment-gaps remove_alignment_gaps-remove-alignment-gaps.o -Wl,--as-needed ./.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >Making all in parallel >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/parallel' >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-banner.o `test -f '../banner.c' || echo './'`../banner.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-branching_search.o `test -f '../branching_search.c' || echo './'`../branching_search.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-calculate_p_y.o `test -f '../calculate_p_y.c' || echo './'`../calculate_p_y.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-discretize.o `test -f '../discretize.c' || echo './'`../discretize.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-display.o `test -f '../display.c' || echo './'`../display.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-dpalign.o `test -f '../dpalign.c' || echo './'`../dpalign.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-em.o `test -f '../em.c' || echo './'`../em.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-exec_parallel.o `test -f '../exec_parallel.c' || echo './'`../exec_parallel.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-fisher_exact.o `test -f '../fisher_exact.c' || echo './'`../fisher_exact.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-init.o `test -f '../init.c' || echo './'`../init.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-justlike.o `test -f '../justlike.c' || echo './'`../justlike.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-likelihood.o `test -f '../likelihood.c' || echo './'`../likelihood.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-llr.o `test -f '../llr.c' || echo './'`../llr.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-logs.o `test -f '../logs.c' || echo './'`../logs.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-meme.o `test -f '../meme.c' || echo './'`../meme.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-meme_util.o `test -f '../meme_util.c' || echo './'`../meme_util.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-message.o `test -f '../message.c' || echo './'`../message.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-mp.o `test -f '../mp.c' || echo './'`../mp.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-oops.o `test -f '../oops.c' || echo './'`../oops.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-partition.o `test -f '../partition.c' || echo './'`../partition.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-prior.o `test -f '../prior.c' || echo './'`../prior.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-psp.o `test -f '../psp.c' || echo './'`../psp.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-read_seq_file.o `test -f '../read_seq_file.c' || echo './'`../read_seq_file.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-seed.o `test -f '../seed.c' || echo './'`../seed.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-seed_diffs.o `test -f '../seed_diffs.c' || echo './'`../seed_diffs.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-seq2theta.o `test -f '../seq2theta.c' || echo './'`../seq2theta.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-sp_matrix.o `test -f '../sp_matrix.c' || echo './'`../sp_matrix.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-starts.o `test -f '../starts.c' || echo './'`../starts.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-subseq7.o `test -f '../subseq7.c' || echo './'`../subseq7.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-tcm.o `test -f '../tcm.c' || echo './'`../tcm.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-ushuffle.o `test -f '../ushuffle.c' || echo './'`../ushuffle.c >x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -DUNIX -D__USE_FIXED_PROTOTYPES__ -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -c -o ../meme-verbosity.o `test -f '../verbosity.c' || echo './'`../verbosity.c >/bin/sh ../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I.. -I/usr/include/libxml2 -DMPI_CMD="" -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -o meme ../meme-banner.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o ../libcommon.la -lxml2 -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -I.. -I/usr/include/libxml2 -DMPI_CMD= -std=gnu89 -Wall -Wno-unused -march=native -mtune=native -O2 -pipe -Wl,-O1 -o meme ../meme-banner.o ../meme-branching_search.o ../meme-calculate_p_y.o ../meme-discretize.o ../meme-display.o ../meme-dpalign.o ../meme-em.o ../meme-exec_parallel.o ../meme-fisher_exact.o ../meme-init.o ../meme-justlike.o ../meme-likelihood.o ../meme-llr.o ../meme-logs.o ../meme-meme.o ../meme-meme_util.o ../meme-message.o ../meme-mp.o ../meme-oops.o ../meme-partition.o ../meme-prior.o ../meme-psp.o ../meme-read_seq_file.o ../meme-seed.o ../meme-seed_diffs.o ../meme-seq2theta.o ../meme-sp_matrix.o ../meme-starts.o ../meme-subseq7.o ../meme-tcm.o ../meme-ushuffle.o ../meme-verbosity.o -Wl,--as-needed ../.libs/libcommon.a -lexslt -lxslt -ldl -lgcrypt -lgpg-error -lxml2 -lz -lm >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src/parallel' >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/src' >Making all in scripts >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts' >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' ama-qvalues.pl.in > ama-qvalues; \ > chmod +x ama-qvalues >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' beeml2meme.pl.in > beeml2meme; \ > chmod +x beeml2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' dreme.py.in > dreme; \ > chmod +x dreme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' dreme_xml_to_html.pl.in > dreme_xml_to_html; \ > chmod +x dreme_xml_to_html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' dreme_xml_to_txt.pl.in > dreme_xml_to_txt; \ > chmod +x dreme_xml_to_txt >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' elm2meme.pl.in > elm2meme; \ > chmod +x elm2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-center.pl.in > fasta-center; \ > chmod +x fasta-center >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-dinucleotide-shuffle.py.in > fasta-dinucleotide-shuffle; \ > chmod +x fasta-dinucleotide-shuffle >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-fetch.pl.in > fasta-fetch; \ > chmod +x fasta-fetch >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-hamming-enrich.py.in > fasta-hamming-enrich; \ > chmod +x fasta-hamming-enrich >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-make-index.pl.in > fasta-make-index; \ > chmod +x fasta-make-index >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-most.pl.in > fasta-most; \ > chmod +x fasta-most >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-subsample.pl.in > fasta-subsample; \ > chmod +x fasta-subsample >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' fasta-unique-names.pl.in > fasta-unique-names; \ > chmod +x fasta-unique-names >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' glam2html.py.in > glam2html; \ > chmod +x glam2html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' glam2psfm.py.in > glam2psfm; \ > chmod +x glam2psfm >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' glam2scan2html.py.in > glam2scan2html; \ > chmod +x glam2scan2html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' chen2meme.pl.in > chen2meme; \ > chmod +x chen2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' jaspar2meme.pl.in > jaspar2meme; \ > chmod +x jaspar2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' hart2meme-bkg.pl.in > hart2meme-bkg; \ > chmod +x hart2meme-bkg >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' hartemink2psp.pl.in > hartemink2psp; \ > chmod +x hartemink2psp >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' iupac2meme.pl.in > iupac2meme; \ > chmod +x iupac2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' mast_xml_to_html.pl.in > mast_xml_to_html; \ > chmod +x mast_xml_to_html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' mast_xml_to_txt.pl.in > mast_xml_to_txt; \ > chmod +x mast_xml_to_txt >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' matrix2meme.pl.in > matrix2meme; \ > chmod +x matrix2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' meme-chip.pl.in > meme-chip; \ > chmod +x meme-chip >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' meme-rename.pl.in > meme-rename; \ > chmod +x meme-rename >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' meme_xml_to_html.pl.in > meme_xml_to_html; \ > chmod +x meme_xml_to_html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' nmica2meme.pl.in > nmica2meme; \ > chmod +x nmica2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' priority2meme.pl.in > priority2meme; \ > chmod +x priority2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' psp-gen.pl.in > psp-gen; \ > chmod +x psp-gen >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' rsat-retrieve-seq.pl.in > rsat-retrieve-seq; \ > chmod +x rsat-retrieve-seq >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' rsat-supported-organisms.pl.in > rsat-supported-organisms; \ > chmod +x rsat-supported-organisms >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' rna2meme.pl.in > rna2meme; \ > chmod +x rna2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' scpd2meme.pl.in > scpd2meme; \ > chmod +x scpd2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' sites2meme.pl.in > sites2meme; \ > chmod +x sites2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' taipale2meme.pl.in > taipale2meme; \ > chmod +x taipale2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' tamo2meme.pl.in > tamo2meme; \ > chmod +x tamo2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' tomtom_xml_to_html.pl.in > tomtom_xml_to_html; \ > chmod +x tomtom_xml_to_html >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' transfac2meme.pl.in > transfac2meme; \ > chmod +x transfac2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' uniprobe2meme.pl.in > uniprobe2meme; \ > chmod +x uniprobe2meme >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' Globals.pm.in > Globals.pm >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' MemeWebUtils.pm.in > MemeWebUtils.pm >/bin/sed -e 's%@ARCHIVE_REVISION@%05f067b1c0a726a532a626d82e471844a3a40f54%' -e 's%@ARCHIVE_DATE@%Thu May 05 14:58:55 2016 -0700%' -e 's%@ARCHIVE_VERSION@%4.11.2%' -e 's%@TMP_DIR@%%' -e 's%@WHICHPERL@%perl%' -e 's%@WHICHPYTHON@%/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/python2.7/bin/python%' -e 's%@WHICHJAVA@%%' -e 's%@WHICHCONVERT@%convert%' -e 's%@WHICHGHOSTSCRIPT@%gs%' -e 's%@PERLLIBDIR@%/usr//lib64/perl5/vendor_perl/5.26.0%' -e 's%@PYTHONLIBDIR@%/usr/lib64/python2.7/site-packages%' -e 's%@JAVALIBDIR@%/usr/lib64/java%' -e 's%@LAM_BIN@%%' -e 's%@APPCONFIGDIR@%/etc/meme%' -e 's%@BINDIR@%/usr/bin%' -e 's%@MEMELOGS@%/var/log/meme%' -e 's%@MEMEDB@%/usr/db%' -e 's%@SITE_URL@%%' -e 's%@MAX_TIME@%18000%' -e 's%@DOCDIR@%/usr/doc/%' StatusPage.pm.in > StatusPage.pm >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts' >Making all in tests >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests' >Making all in ame >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/ame' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/ame' >Making all in clustalw2fasta >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/clustalw2fasta' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/clustalw2fasta' >Making all in centrimo >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/centrimo' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/centrimo' >Making all in common >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common' >Making all in motif.crp0 >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common/motif.crp0' >make[4]: Nothing to be done for 'all'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common/motif.crp0' >Making all in motif.Puf3p >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common/motif.Puf3p' >make[4]: Nothing to be done for 'all'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common/motif.Puf3p' >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common' >make[4]: Nothing to be done for 'all-am'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common' >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/common' >Making all in create-priors >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/create-priors' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/create-priors' >Making all in draw-mhmm >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/draw-mhmm' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/draw-mhmm' >Making all in dreme >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/dreme' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/dreme' >Making all in fasta-center >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/fasta-center' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/fasta-center' >Making all in fimo >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/fimo' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/fimo' >Making all in glam2 >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/glam2' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/glam2' >Making all in glam2scan >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/glam2scan' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/glam2scan' >Making all in gomo >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/gomo' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/gomo' >Making all in mast >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mast' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mast' >Making all in mcast >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mcast' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mcast' >Making all in meme >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/meme' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/meme' >Making all in mhmm >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmm' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmm' >Making all in mhmms >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmms' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmms' >Making all in mhmmscan >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmmscan' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/mhmmscan' >Making all in motiph >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/motiph' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/motiph' >Making all in psp-gen >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/psp-gen' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/psp-gen' >Making all in qvalue >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/qvalue' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/qvalue' >Making all in scaffold >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scaffold' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scaffold' >Making all in spamo >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/spamo' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/spamo' >Making all in tomtom >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/tomtom' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/tomtom' >Making all in web >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/web' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/web' >Making all in scripts >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make[3]: Nothing to be done for 'all'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests' >make[3]: Nothing to be done for 'all-am'. >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests' >Making all in doc >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >/bin/sed -e "/INSERT_COPYING_FILE/r ../COPYING" -e "/INSERT_COPYING_FILE/d" copyright.html.in > copyright.html >make all-recursive >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >Making all in examples >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples' >Making all in compute_prior_dist_example_output_files >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples/compute_prior_dist_example_output_files' >make[5]: Nothing to be done for 'all'. >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples/compute_prior_dist_example_output_files' >Making all in sample_opal_scripts >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples/sample_opal_scripts' >make[5]: Nothing to be done for 'all'. >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples/sample_opal_scripts' >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples' >make[5]: Nothing to be done for 'all-am'. >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples' >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/examples' >Making all in images >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/images' >make[4]: Nothing to be done for 'all'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/images' >Making all in css >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/css' >make[4]: Nothing to be done for 'all'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/css' >Making all in js >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/js' >/bin/sed -e 's%\@VERSION\@%4.11.2%g' -e 's%\@CONTACT\@%%g' -e 's%\@DEV_CONTACT\@%meme-suite@uw.edu%g' -e 's%\@URL\@%%g' -e 's%\@PREV_URL\@%%g' -e 's%\@PREV_VER\@%%g' -e 's%\@NOTICES_URL\@%./notices.txt%g' -e 's%\@NEWS_URL\@%./news.txt%g' menu-configure.js.in > menu-configure.js >make all-am >make[5]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/js' >make[5]: Nothing to be done for 'all-am'. >make[5]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/js' >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc/js' >make[4]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >make[4]: Nothing to be done for 'all-am'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/doc' >Making all in etc >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/etc' >/bin/sed -e 's%@SITE_URL@%%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' constants.js.in > constants.js >/bin/sed -e 's%@SITE_URL@%%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' constants.xsl.in > constants.xsl >perl generate_xsl_icons.pl ../doc/images/gomo_icon.png > icons.xsl >/bin/sed -e 's%@SITE_URL@%%' -e 's%@AMIGO_URL@%http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO_TERM_ID%' logging.conf.in > logging.conf >/bin/sed 's/tname/meme.css/' xsl-wrapper.in | /bin/sed '5r meme.css' > meme.css.xsl >perl generate_js_wrapped_template.pl motif_logo_template template.eps > motif_logo_template.js >/bin/sed 's/tname/utilities.js/' xsl-wrapper.in | /bin/sed '5r utilities.js' > utilities.js.xsl >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/etc' >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' >>>> Source compiled. >>>> Test phase: sci-biology/meme-4.11.2_p2 >make -j3 -j1 test >cd tests/scripts; make check >make[1]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make test_driver >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >/bin/sed -e 's%@WHICHPERL@%perl%' test_driver.pl.in > test_driver >chmod +x test_driver >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make check-TESTS >make[2]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make[3]: Entering directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >[32mPASS: ama1[0m >[32mPASS: ama2[0m >[32mPASS: ame1[0m >[32mPASS: centrimo1[0m >[32mPASS: create-priors1[0m >[32mPASS: create-priors2[0m >[31mFAIL: dreme1[0m (CRASH!) >[31mFAIL: dreme2[0m (CRASH!) >[31mFAIL: fasta-center1[0m (differences in stdout) >[32mPASS: fasta-dinucleotide-shuffle1[0m >[32mPASS: fimo1[0m >[32mPASS: fimo2[0m >[32mPASS: fimo3[0m >[32mPASS: fimo4[0m >[32mPASS: glam2_1[0m >[32mPASS: glam2scan1[0m >[32mPASS: gomo1[0m >[32mPASS: gomo2[0m >[32mPASS: mast1[0m >[32mPASS: mast2[0m >[32mPASS: mast3[0m >[32mPASS: mast4[0m >[32mPASS: mast5[0m >[32mPASS: mast6[0m >[32mPASS: mast7[0m >[32mPASS: mast8[0m >[32mPASS: mast9[0m >[32mPASS: mast10[0m >[32mPASS: mast11[0m >[32mPASS: mast12[0m >[32mPASS: mast13[0m >[32mPASS: mast14[0m >[32mPASS: mast15[0m >[32mPASS: mast16[0m >[32mPASS: mast17[0m >[32mPASS: mast18[0m >[32mPASS: mcast1[0m >[31mFAIL: meme1[0m (CRASH!) >[31mFAIL: meme2[0m (CRASH!) >[31mFAIL: meme3[0m (CRASH!) >[31mFAIL: meme4[0m (CRASH!) >[31mFAIL: meme5[0m (CRASH!) >[31mFAIL: meme6[0m (CRASH!) >[32mPASS: meme_psp[0m >[34;1mSKIP: motif-in.meme.crp0.text[0m (meme.txt missing) >[34;1mSKIP: motif-in.meme.crp0.xml[0m (meme.xml missing) >[34;1mSKIP: motif-in.meme.crp0.html[0m (meme.html missing) >[34;1mSKIP: motif-in.meme.lipocalin.text[0m (meme.txt missing) >[34;1mSKIP: motif-in.meme.lipocalin.xml[0m (meme.xml missing) >[34;1mSKIP: motif-in.meme.lipocalin.html[0m (meme.html missing) >[34;1mSKIP: motif-in.meme.puf3p.text[0m (meme.txt missing) >[34;1mSKIP: motif-in.meme.puf3p.xml[0m (meme.xml missing) >[34;1mSKIP: motif-in.meme.puf3p.html[0m (meme.html missing) >[34;1mSKIP: motif-in.meme.crp0.extdna.text[0m (meme.txt missing) >[34;1mSKIP: motif-in.meme.crp0.extdna.xml[0m (meme.xml missing) >[34;1mSKIP: motif-in.meme.crp0.extdna.html[0m (meme.html missing) >[34;1mSKIP: motif-in.dreme.klf1.text[0m (dreme.txt missing) >[34;1mSKIP: motif-in.dreme.klf1.xml[0m (dreme.xml missing) >[34;1mSKIP: motif-in.dreme.klf1.html[0m (dreme.html missing) >[34;1mSKIP: motif-in.dreme.klf1.extdna.text[0m (dreme.txt missing) >[34;1mSKIP: motif-in.dreme.klf1.extdna.xml[0m (dreme.xml missing) >[34;1mSKIP: motif-in.dreme.klf1.extdna.html[0m (dreme.html missing) >[34;1mSKIP: motif-in.dreme.puf3p.text[0m (dreme.txt missing) >[34;1mSKIP: motif-in.dreme.puf3p.xml[0m (dreme.xml missing) >[34;1mSKIP: motif-in.dreme.puf3p.html[0m (dreme.html missing) >[32mPASS: motiph1[0m >[32mPASS: motiph2[0m >[31mFAIL: psp-gen1[0m (differences in stdout) >[31mFAIL: psp-gen2[0m (differences in stdout) >[31mFAIL: psp-gen3[0m (differences in stdout) >[32mPASS: qvalue1[0m >[32mPASS: spamo1[0m >[32mPASS: spamo2[0m >[31mFAIL: tomtom_allr[0m (CRASH!) >[31mFAIL: tomtom_ed[0m (CRASH!) >[31mFAIL: tomtom_kullback[0m (CRASH!) >[31mFAIL: tomtom_pearson[0m (CRASH!) >[31mFAIL: tomtom_sandelin[0m (CRASH!) >[31mFAIL: tomtom_blic1[0m (CRASH!) >[31mFAIL: tomtom_blic5[0m (CRASH!) >[31mFAIL: tomtom_allr_cs[0m (CRASH!) >[31mFAIL: tomtom_ed_cs[0m (CRASH!) >[31mFAIL: tomtom_kullback_cs[0m (CRASH!) >[31mFAIL: tomtom_pearson_cs[0m (CRASH!) >[31mFAIL: tomtom_sandelin_cs[0m (CRASH!) >[31mFAIL: tomtom_blic1_cs[0m (CRASH!) >[31mFAIL: tomtom_blic5_cs[0m (CRASH!) >[0;31m============================================================================[m >[0;31mTestsuite summary for meme 4.11.2[m >[0;31m============================================================================[m >[1m# TOTAL: 91[m >[0;32m# PASS: 40[m >[1;34m# SKIP: 21[m ># XFAIL: 0 >[0;31m# FAIL: 26[m ># XPASS: 0 >[0;35m# ERROR: 4[m >[0;31m============================================================================[m >[0;31mSee tests/scripts/test-suite.log[m >[0;31m============================================================================[m >make[3]: *** [Makefile:584: test-suite.log] Error 1 >make[3]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make[2]: *** [Makefile:692: check-TESTS] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make[1]: *** [Makefile:756: check-am] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts' >make: *** [Makefile:1191: test] Error 2 > [31;01m*[0m ERROR: sci-biology/meme-4.11.2_p2::gentoo failed (test phase): > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-biology/meme-4.11.2_p2::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-biology/meme-4.11.2_p2::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/log/portage-build/build/sci-biology/meme-4.11.2_p2:20170718-080339.log'. > [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/meme-4.11.2_p2/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2' > [31;01m*[0m S: '/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2'
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