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Gentoo's Bugzilla – Attachment 485224 Details for
Bug 625358
sci-libs/grib_api-1.11.0 will not build with USE python: configure: error: NumPy is not installed. Use --disable-numpy if you want to disable Numpy from the build.
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build.log
build-grib_api-11.txt (text/plain), 12.00 KB, created by
deference
on 2017-07-17 03:07:17 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
deference
Created:
2017-07-17 03:07:17 UTC
Size:
12.00 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/grib_api-1.11.0 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 doc elibc_glibc examples fortran jpeg2k kernel_linux netcdf openmp perl png python python_single_target_python3_4 python_targets_python2_7 python_targets_python3_4 static-libs threads userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox userpriv usersandbox > [32;01m*[0m Using following Fortran compiler: > [32;01m*[0m F77: x86_64-pc-linux-gnu-gfortran > [32;01m*[0m FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking grib_api-1.11.0.tar.gz to /var/tmp/portage/sci-libs/grib_api-1.11.0/work >>>> Source unpacked in /var/tmp/portage/sci-libs/grib_api-1.11.0/work >>>> Preparing source in /var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0" > * econf: updating grib_api-1.11.0/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating grib_api-1.11.0/config/config.sub with /usr/share/gnuconfig/config.sub >/var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/grib_api-1.11.0 --enable-shared --enable-static --without-perl --enable-jpeg --enable-fortran --enable-omp-packing --enable-python --enable-numpy --enable-pthread --with-netcdf=/usr --with-png-support >configure: loading site script /usr/share/config.site >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >1.11.0 >configuring grib_api 1.11.0 >checking whether build environment is sane... yes >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for x86_64-pc-linux-gnu-xlc_r... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking for bison... bison -y >checking for flex... flex >checking lex output file root... lex.yy >checking lex library... -lfl >checking whether yytext is a pointer... yes >checking for x86_64-pc-linux-gnu-pgf90... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-pgf90... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if pthreads available... yes >checking if Linux pthreads available... yes >checking if Fortran 90 compiler capitalizes .mod filenames... no >checking if double and float are ieee big endian... no >checking if double and float are ieee little endian... yes >checking if Big Endian... no >checking if inline in C... yes >checking if bus error on unaligned pointers... no >checking for posix_memalign... yes >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking if Fortran 90 compiler capitalizes .mod filenames... no >checking if Fortran 90 can resolve debug symbols in modules... yes >checking fortran 90 modules inclusion flag... -I >checking for nc_open in -lnetcdf... yes >checking for PNG ... >checking png.h usability... yes >checking png.h presence... yes >checking for png.h... yes >checking for png_read_png in -lpng... yes >checking if PNG support package is complete... yes >checking whether /usr/bin/python3.4 version >= 2.5... yes >checking for /usr/bin/python3.4 version... 3.4 >checking for /usr/bin/python3.4 platform... linux >checking for /usr/bin/python3.4 script directory... ${prefix}/lib64/python3.4/site-packages >checking for /usr/bin/python3.4 extension module directory... ${exec_prefix}/lib64/python3.4/site-packages >checking for python3.4-config... /usr/bin/python3.4-config >checking python include flags... -I/usr/include/python3.4m -I/usr/include/python3.4m >checking python link flags... -L/usr/lib64 -lpython3.4m -lpthread -ldl -lutil -lm -Xlinker -export-dynamic >checking python C flags... -I/usr/include/python3.4m -I/usr/include/python3.4m -Wno-unused-result -pipe -O2 -march=amdfam10 -mtune=amdfam10 -m3dnow -mmmx -msse -msse3 -msse4a -mpopcnt -mfpmath=sse -mabm -mfxsr -msahf -mrecip=all -minline-stringops-dynamically -frecord-gcc-switches -fwrapv -DNDEBUG >checking python libraries... -lpython3.4m -lpthread -ldl -lutil -lm >checking whether numpy is installed... no >configure: error: NumPy is not installed. Use --disable-numpy if you want to disable Numpy from the build. > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0/config.log > [31;01m*[0m ERROR: sci-libs/grib_api-1.11.0::gentoo failed (configure phase): > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 115: Called src_configure > [31;01m*[0m environment, line 4154: Called autotools-utils_src_configure > [31;01m*[0m environment, line 1021: Called econf '--docdir=/usr/share/doc/grib_api-1.11.0' '--enable-shared' '--enable-static' '--without-perl' '--enable-jpeg' '--enable-fortran' '--enable-omp-packing' '--enable-python' '--enable-numpy' '--enable-pthread' '--with-netcdf=/usr' '--with-png-support' > [31;01m*[0m phase-helpers.sh, line 665: Called __helpers_die 'econf failed' > [31;01m*[0m isolated-functions.sh, line 117: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "$@" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/grib_api-1.11.0::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/grib_api-1.11.0::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/grib_api-1.11.0/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/grib_api-1.11.0/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/grib_api-1.11.0/work/grib_api-1.11.0'
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bug 625358
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