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Gentoo's Bugzilla – Attachment 472270 Details for
Bug 618114
sci-mathematics/cgal-4.9: please stabilise
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graph-tool-2.19:20170510-135011.log
graph-tool-2.19:20170510-135011.log (text/plain), 95.33 KB, created by
Agostino Sarubbo
on 2017-05-10 14:39:52 UTC
(
hide
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Description:
graph-tool-2.19:20170510-135011.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2017-05-10 14:39:52 UTC
Size:
95.33 KB
patch
obsolete
> * Package: dev-python/graph-tool-2.19 > * Repository: gentoo > * Maintainer: python@gentoo.org > * USE: abi_x86_64 amd64 cairo elibc_glibc kernel_linux openmp python_targets_python2_7 python_targets_python3_4 userland_GNU > * FEATURES: preserve-libs sandbox splitdebug userpriv usersandbox >>>> Unpacking source... >>>> Unpacking graph-tool-2.19.tar.bz2 to /var/tmp/portage/dev-python/graph-tool-2.19/work >>>> Source unpacked in /var/tmp/portage/dev-python/graph-tool-2.19/work >>>> Preparing source in /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19 ... > * Will copy sources from /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19 > * python2_7: copying to /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7 > * python3_4: copying to /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python3_4 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19 ... > * python2_7: running run_in_build_dir configure > * econf: updating graph-tool-2.19-python3_4/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.19-python3_4/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.19-python2_7/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.19-python2_7/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.19/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.19/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/graph-tool-2.19 --htmldir=/usr/share/doc/graph-tool-2.19/html --libdir=/usr/lib64 --disable-static --disable-optimization --enable-openmp --enable-cairo --with-boost-python=2.7-mt >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for library containing strerror... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ANSI C header files... (cached) yes >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features by default... no >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features with -std=gnu++14... yes >checking whether to enable debug info... no >checking whether to enable optimizations... no >checking whether to enable symbol visibility manipulation... yes >checking whether to enable parallel algorithms with openmp... yes >checking whether to enable cairo drawing... yes >checking for main in -lm... yes >checking for main in -lbz2... yes >checking for main in -lexpat... yes >================ >Detecting python >================ >checking whether /usr/bin/python2.7 version is >= 2.6... yes >checking for /usr/bin/python2.7 version... 2.7 >checking for /usr/bin/python2.7 platform... linux2 >checking for /usr/bin/python2.7 script directory... ${prefix}/lib64/python2.7/site-packages >checking for /usr/bin/python2.7 extension module directory... ${exec_prefix}/lib64/python2.7/site-packages >checking for python2.7... /usr/bin/python2.7 >checking for a version of Python >= '2.1.0'... yes >checking for a version of Python == '2.7.12'... yes >checking for the distutils Python package... yes >checking for Python include path... -I/usr/include/python2.7 >checking for Python library path... -L/usr/lib64 -lpython2.7 >checking for Python site-packages path... /usr/lib64/python2.7/site-packages >checking python extra libraries... -lpthread -ldl -lutil -lm >checking python extra linking flags... -Xlinker -export-dynamic >checking consistency of all components of python development environment... yes >graph-tool will be installed at: /usr/lib64/python2.7/site-packages >=========================== >Using python version: 2.7.12 >=========================== >checking for boostlib >= 1.54.0... yes >checking whether the Boost::Python library is available... yes >checking whether 2.7-mt is the correct library... no >checking whether boost_python-2.7-mt is the correct library... yes >checking whether the Boost::IOStreams library is available... yes >checking for exit in -lboost_iostreams-mt... yes >checking whether the Boost::Regex library is available... yes >checking for exit in -lboost_regex-mt... yes >checking whether the Boost::Coroutine library is available... no >configure: WARNING: No usable boost::coroutine found! Some functionality will be disabled in the library. >checking whether the Boost::Graph library is available... yes >checking for exit in -lboost_graph-mt... yes >checking for main in -lCGAL... yes >checking whether to enable cgal debbuging with valgrind... no >checking python2.7 module: numpy... yes >checking for /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h... yes >checking python2.7 module: scipy... yes >checking expat.h usability... yes >checking expat.h presence... yes >checking for expat.h... yes >checking CGAL/version.h usability... yes >checking CGAL/version.h presence... yes >checking for CGAL/version.h... yes >checking for CAIROMM... yes >checking python2.7 module: cairo... yes >checking pycairo/pycairo.h usability... yes >checking pycairo/pycairo.h presence... yes >checking for pycairo/pycairo.h... yes >checking whether to enable sparsehash... yes >checking for SPARSEHASH... yes >checking sparsehash/dense_hash_set usability... yes >checking sparsehash/dense_hash_set presence... yes >checking for sparsehash/dense_hash_set... yes >configure: pkgconfig directory is ${libdir}/pkgconfig >checking our pkgconfig libname... graph-tool-py2.7 >checking our pkgconfig version... 2.19 >checking our pkgconfig_libdir... ${libdir}/pkgconfig >expanded our pkgconfig_libdir... /usr/lib64/pkgconfig >checking our pkgconfig_libfile... graph-tool-py2.7.pc >checking our package / suffix... graph-tool / >checking our pkgconfig description... graph-tool Python library >checking our pkgconfig requires... >checking our pkgconfig ext libs... -lboost_python-2.7-mt >checking our pkgconfig cppflags... -ftemplate-depth-250 -I/usr/include/python2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/lib64/python2.7/site-packages/graph_tool/include -I/usr/lib64/python2.7/site-packages/graph_tool/include/boost-workaround >checking our pkgconfig ldflags... >noninstalled pkgconfig -L /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7/src/.libs >noninstalled pkgconfig -I /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7/. >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/graph/Makefile >config.status: creating src/graph/centrality/Makefile >config.status: creating src/graph/clustering/Makefile >config.status: creating src/graph/community_old/Makefile >config.status: creating src/graph/correlations/Makefile >config.status: creating src/graph/draw/Makefile >config.status: creating src/graph/flow/Makefile >config.status: creating src/graph/generation/Makefile >config.status: creating src/graph/inference/Makefile >config.status: creating src/graph/layout/Makefile >config.status: creating src/graph/search/Makefile >config.status: creating src/graph/spectral/Makefile >config.status: creating src/graph/stats/Makefile >config.status: creating src/graph/topology/Makefile >config.status: creating src/graph/util/Makefile >config.status: creating src/graph_tool/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing graph-tool-py2.7.pc commands >config.status: creating graph-tool-py2.7.pc.in >config.status: creating graph-tool-py2.7.pc >config.status: creating graph-tool-py2.7-uninstalled.pc >config.status: creating graph-tool-py2.7-uninstalled.sh > * python3_4: running run_in_build_dir configure > * econf: updating graph-tool-2.19-python3_4/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.19-python3_4/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.19-python2_7/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.19-python2_7/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.19/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.19/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/graph-tool-2.19 --htmldir=/usr/share/doc/graph-tool-2.19/html --libdir=/usr/lib64 --disable-static --disable-optimization --enable-openmp --enable-cairo --with-boost-python=3.4-mt >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether make supports nested variables... (cached) yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for library containing strerror... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ANSI C header files... (cached) yes >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features by default... no >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features with -std=gnu++14... yes >checking whether to enable debug info... no >checking whether to enable optimizations... no >checking whether to enable symbol visibility manipulation... yes >checking whether to enable parallel algorithms with openmp... yes >checking whether to enable cairo drawing... yes >checking for main in -lm... yes >checking for main in -lbz2... yes >checking for main in -lexpat... yes >================ >Detecting python >================ >checking whether /usr/bin/python3.4 version is >= 2.6... yes >checking for /usr/bin/python3.4 version... 3.4 >checking for /usr/bin/python3.4 platform... linux >checking for /usr/bin/python3.4 script directory... ${prefix}/lib64/python3.4/site-packages >checking for /usr/bin/python3.4 extension module directory... ${exec_prefix}/lib64/python3.4/site-packages >checking for python3.4... /usr/bin/python3.4 >checking for a version of Python >= '2.1.0'... yes >checking for a version of Python == '3.4.5'... yes >checking for the distutils Python package... yes >checking for Python include path... -I/usr/include/python3.4m >checking for Python library path... -L/usr/lib64 -lpython3.4m >checking for Python site-packages path... /usr/lib64/python3.4/site-packages >checking python extra libraries... -lpthread -ldl -lutil -lm >checking python extra linking flags... -Xlinker -export-dynamic >checking consistency of all components of python development environment... yes >graph-tool will be installed at: /usr/lib64/python3.4/site-packages >=========================== >Using python version: 3.4.5 >=========================== >checking for boostlib >= 1.54.0... yes >checking whether the Boost::Python library is available... yes >checking whether 3.4-mt is the correct library... no >checking whether boost_python-3.4-mt is the correct library... yes >checking whether the Boost::IOStreams library is available... yes >checking for exit in -lboost_iostreams-mt... yes >checking whether the Boost::Regex library is available... yes >checking for exit in -lboost_regex-mt... yes >checking whether the Boost::Coroutine library is available... no >configure: WARNING: No usable boost::coroutine found! Some functionality will be disabled in the library. >checking whether the Boost::Graph library is available... yes >checking for exit in -lboost_graph-mt... yes >checking for main in -lCGAL... yes >checking whether to enable cgal debbuging with valgrind... no >checking python3.4 module: numpy... yes >checking for /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h... yes >checking python3.4 module: scipy... yes >checking expat.h usability... yes >checking expat.h presence... yes >checking for expat.h... yes >checking CGAL/version.h usability... yes >checking CGAL/version.h presence... yes >checking for CGAL/version.h... yes >checking for CAIROMM... yes >checking python3.4 module: cairo... yes >checking pycairo/py3cairo.h usability... yes >checking pycairo/py3cairo.h presence... yes >checking for pycairo/py3cairo.h... yes >checking whether to enable sparsehash... yes >checking for SPARSEHASH... yes >checking sparsehash/dense_hash_set usability... yes >checking sparsehash/dense_hash_set presence... yes >checking for sparsehash/dense_hash_set... yes >configure: pkgconfig directory is ${libdir}/pkgconfig >checking our pkgconfig libname... graph-tool-py3.4 >checking our pkgconfig version... 2.19 >checking our pkgconfig_libdir... ${libdir}/pkgconfig >expanded our pkgconfig_libdir... /usr/lib64/pkgconfig >checking our pkgconfig_libfile... graph-tool-py3.4.pc >checking our package / suffix... graph-tool / >checking our pkgconfig description... graph-tool Python library >checking our pkgconfig requires... >checking our pkgconfig ext libs... -lboost_python-3.4-mt >checking our pkgconfig cppflags... -ftemplate-depth-250 -I/usr/include/python3.4m -I/usr/lib64/python3.4/site-packages/numpy/core/include -I/usr/include -I/usr/lib64/python3.4/site-packages/graph_tool/include -I/usr/lib64/python3.4/site-packages/graph_tool/include/boost-workaround >checking our pkgconfig ldflags... >noninstalled pkgconfig -L 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>config.status: creating src/graph/stats/Makefile >config.status: creating src/graph/topology/Makefile >config.status: creating src/graph/util/Makefile >config.status: creating src/graph_tool/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing graph-tool-py3.4.pc commands >config.status: creating graph-tool-py3.4.pc.in >config.status: creating graph-tool-py3.4.pc >config.status: creating graph-tool-py3.4-uninstalled.pc >config.status: creating graph-tool-py3.4-uninstalled.sh >>>> Source configured. >>>> Compiling source in /var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19 ... > * python2_7: running run_in_build_dir emake -j1 >make -j8 -j1 >make all-recursive >make[1]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7' >Making all in src >make[2]: Entering directory 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-march=native -O2 -ggdb3 -frounding-math -fopenmp -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wno-unknown-pragmas -ftemplate-depth-250 -DNDEBUG -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -ggdb3 -c graph_rewiring.cc -fPIC -DPIC -o .libs/graph_rewiring.o >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/python2.7 -fopenmp -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wno-unknown-pragmas -ftemplate-depth-250 -DNDEBUG -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -ggdb3 -frounding-math -fopenmp -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wno-unknown-pragmas -ftemplate-depth-250 -DNDEBUG -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -ggdb3 -c -o graph_triangulation.lo graph_triangulation.cc >libtool: compile: x86_64-pc-linux-gnu-g++ -std=gnu++14 -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/python2.7 -fopenmp -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wno-unknown-pragmas -ftemplate-depth-250 -DNDEBUG -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -ggdb3 -frounding-math -fopenmp -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wno-unknown-pragmas -ftemplate-depth-250 -DNDEBUG -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -ggdb3 -c graph_triangulation.cc -fPIC -DPIC -o .libs/graph_triangulation.o >graph_triangulation.cc:55:61: fatal error: CGAL/Periodic_3_Delaunay_triangulation_traits_3.h: No such file or directory >compilation terminated. >make[4]: *** [Makefile:556: graph_triangulation.lo] Error 1 >make[4]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7/src/graph/generation' >make[3]: *** [Makefile:742: all-recursive] Error 1 >make[3]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7/src/graph' >make[2]: *** [Makefile:412: all-recursive] Error 1 >make[2]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7/src' >make[1]: *** [Makefile:584: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7' >make: *** [Makefile:471: all] Error 2 > * ERROR: dev-python/graph-tool-2.19::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=dev-python/graph-tool-2.19::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-python/graph-tool-2.19::gentoo'`. > * The complete build log is located at '/var/log/log/build/dev-python/graph-tool-2.19:20170510-135011.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/graph-tool-2.19/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-python/graph-tool-2.19/temp/environment'. > * Working directory: '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19-python2_7' > * S: '/var/tmp/portage/dev-python/graph-tool-2.19/work/graph-tool-2.19'
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