build.log

build.log (text/x-log), 28.98 KB, created by Juergen Rose on 2017-04-03 08:11:37 UTC

[32;01m * [39;49;00mPackage:    sci-libs/flann-1.9.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 doc elibc_glibc examples kernel_linux mpi octave openmp userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking flann-1.9.1.tar.gz to /var/tmp/portage/sci-libs/flann-1.9.1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/flann-1.9.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build"
cmake -C /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_C_BINDINGS=ON -DBUILD_PYTHON_BINDINGS=OFF -DPYTHON_EXECUTABLE= -DDOCDIR=share/doc/flann-1.9.1 -DBUILD_CUDA_LIB=no -DBUILD_EXAMPLES=yes -DBUILD_DOC=yes -DBUILD_TESTS=OFF -DBUILD_MATLAB_BINDINGS=yes -DUSE_MPI=yes -DUSE_OPENMP=yes -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1
loading initial cache file /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/gentoo_common_config.cmake
Re-run cmake no build system arguments
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/mpicxx
-- Check for working CXX compiler: /usr/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find PythonInterp (missing:  PYTHON_EXECUTABLE) 
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.18")  
-- Found MPI_C: /usr/lib64/libmpi.so  
-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so;/usr/lib64/libmpi.so  
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.63.0
-- Found the following Boost libraries:
--   mpi
--   system
--   serialization
--   thread
--   chrono
--   date_time
--   atomic
-- Found GTest: /usr/lib64/libgtest.so  
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:179 (if):
  if given arguments:

    "TRUE"

  An argument named "TRUE" appears in a conditional statement.  Policy
  CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
  "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindOpenMP.cmake:224 (_OPENMP_GET_SPEC_DATE)
  CMakeLists.txt:122 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
CMake Warning (dev) at /usr/share/cmake/Modules/FindOpenMP.cmake:179 (if):
  if given arguments:

    "TRUE"

  An argument named "TRUE" appears in a conditional statement.  Policy
  CMP0012 is not set: if() recognizes numbers and boolean constants.  Run
  "cmake --help-policy CMP0012" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindOpenMP.cmake:266 (_OPENMP_GET_SPEC_DATE)
  CMakeLists.txt:122 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found OpenMP: -fopenmp  
CMake Warning (dev) at src/matlab/CMakeLists.txt:19 (get_property):
  Policy CMP0026 is not set: Disallow use of the LOCATION target property.
  Run "cmake --help-policy CMP0026" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The LOCATION property should not be read from target "flann_s".  Use the
  target name directly with add_custom_command, or use the generator
  expression $<TARGET_FILE>, as appropriate.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found LATEX: /usr/bin/latex   
-- Install prefix: /usr
-- Build type: Gentoo
-- Building C bindings: ON
-- Building examples: yes
-- Building tests: OFF
-- Building documentation: yes
-- Building python bindings: OFF
-- Building matlab bindings: yes
-- Building CUDA library: no
-- Using OpenMP support: yes
-- Using MPI support: yes
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -march=native -O2 -pipe -fopenmp
C++             -march=native -O2 -pipe -fopenmp
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed 
Module          -Wl,-O1 -Wl,--as-needed
Shared          -Wl,-O1 -Wl,--as-needed

-- Configuring done
CMake Warning (dev) at cmake/UseLATEX.cmake:755 (ADD_DEPENDENCIES):
  Policy CMP0046 is not set: Error on non-existent dependency in
  add_dependencies.  Run "cmake --help-policy CMP0046" for policy details.
  Use the cmake_policy command to set the policy and suppress this warning.

  The dependency target "manual.tex" of target "html" does not exist.
Call Stack (most recent call first):
  cmake/UseLATEX.cmake:790 (ADD_LATEX_TARGETS)
  doc/CMakeLists.txt:10 (add_latex_document)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build"
make -j1 VERBOSE=1 
/usr/bin/cmake -H/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1 -B/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/CMakeFiles /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build'
make -f src/cpp/CMakeFiles/flann_cpp_s.dir/build.make src/cpp/CMakeFiles/flann_cpp_s.dir/depend
make[2]: Entering directory '/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build'
cd /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1 /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1/src/cpp /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/src/cpp /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/src/cpp/CMakeFiles/flann_cpp_s.dir/DependInfo.cmake --color=
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/usr/bin/mpicxx  -fPIC -march=native -O2 -pipe -fopenmp -Wl,-O1 -Wl,--as-needed -shared -Wl,-soname,libflann_cpp.so.1.9 -o ../../lib/libflann_cpp.so.1.9.1  -Wl,-whole-archive ../../lib/libflann_cpp_s.a -Wl,-no-whole-archive 
cd /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/src/cpp && /usr/bin/cmake -E cmake_symlink_library ../../lib/libflann_cpp.so.1.9.1 ../../lib/libflann_cpp.so.1.9 ../../lib/libflann_cpp.so
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/usr/bin/mpicxx   -march=native -O2 -pipe -fopenmp  -Wl,-O1 -Wl,--as-needed  CMakeFiles/flann_mpi_server.dir/flann/mpi/flann_mpi_server.cpp.o  -o ../../bin/flann_mpi_server -Wl,-rpath,/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/lib: -rdynamic ../../lib/libflann_cpp.so.1.9.1 -lhdf5 -lsz -lz -ldl -lm -lmpi_cxx -lmpi -lboost_mpi-mt -lboost_system-mt -lboost_serialization-mt -lboost_thread-mt -lboost_chrono-mt -lboost_date_time-mt -lboost_atomic-mt -Wl,-whole-archive ../../lib/libflann_cpp_s.a -Wl,-no-whole-archive 
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/usr/bin/mpicxx  -fPIC -march=native -O2 -pipe -fopenmp -Wl,-O1 -Wl,--as-needed -shared -Wl,-soname,libflann.so.1.9 -o ../../lib/libflann.so.1.9.1  -Wl,-whole-archive ../../lib/libflann_s.a -Wl,-no-whole-archive 
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cd /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/src/matlab && /usr/bin/mkoctfile /var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1/src/matlab/nearest_neighbors.cpp -I/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1/src/cpp -L/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build/lib -DFLANN_STATIC -lflann_s -lgomp
In file included from [01m[K/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/include/g++-v5/cstdint:35:0[m[K,
                 from [01m[K/usr/include/octave-4.2.1/octave/octave-config.h:64[m[K,
                 from [01m[K/usr/include/octave-4.2.1/octave/mex.h:51[m[K,
                 from [01m[K/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1/src/matlab/nearest_neighbors.cpp:34[m[K:
[01m[K/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/include/g++-v5/bits/c++0x_warning.h:32:2:[m[K [01;31m[Kerror: [m[K#error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
 #error This file requires compiler and library support \
[01;32m[K  ^[m[K
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make[1]: *** [CMakeFiles/Makefile2:409: src/matlab/CMakeFiles/mex_nearest_neighbors.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-libs/flann-1.9.1/work/flann-1.9.1_build'
make: *** [Makefile:150: all] Error 2
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 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/flann-1.9.1::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/flann-1.9.1/temp/build.log'.
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