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Gentoo's Bugzilla – Attachment 464332 Details for
Bug 600040
sci-biology/emboss-6.6.0 : configure: error: Package requirements (plplot) were not met:
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sci-biology:emboss-6.6.0:20170219-110851.log
sci-biology:emboss-6.6.0:20170219-110851.log (text/plain), 159.98 KB, created by
Toralf Förster
on 2017-02-19 12:41:40 UTC
(
hide
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Description:
sci-biology:emboss-6.6.0:20170219-110851.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2017-02-19 12:41:40 UTC
Size:
159.98 KB
patch
obsolete
> * Package: sci-biology/emboss-6.6.0 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: X abi_x86_64 amd64 elibc_glibc kernel_linux pdf png userland_GNU > * FEATURES: preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking EMBOSS-6.6.0.tar.gz to /var/tmp/portage/sci-biology/emboss-6.6.0/work >>>> Source unpacked in /var/tmp/portage/sci-biology/emboss-6.6.0/work >>>> Preparing source in /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0 ... > * Applying emboss-6.6.0_fix-build-system.patch ... > [ ok ] > * Applying emboss-6.6.0_FORTIFY_SOURCE-fix.patch ... > [ ok ] > * Applying emboss-6.6.0_plplot-declarations.patch ... > [ ok ] > * Applying emboss-6.6.0_qa-implicit-declarations.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --force-missing ... > [ ok ] > * Running elibtoolize in: EMBOSS-6.6.0/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build" > * econf: updating EMBOSS-6.6.0/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating EMBOSS-6.6.0/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/emboss-6.6.0 --enable-shared --disable-static --with-x --with-pngdriver=/usr --with-hpdf=/usr --without-mysql --without-postgresql --enable-large --without-java --enable-systemlibs >checking for gawk... gawk >checking for x86_64-pc-linux-gnu-icc... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for x86_64-pc-linux-gnu-icpc... no >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >checking whether ln -s works... yes >checking whether make sets $(MAKE)... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking whether build environment is sane... yes >checking for style of include used by make... GNU >checking whether make supports nested variables... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for ANSI C header files... (cached) yes >checking for unistd.h... (cached) yes >checking TargetConfig.h usability... no >checking TargetConfig.h presence... no >checking for TargetConfig.h... no >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking for pid_t... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking whether getpgrp requires zero arguments... yes >checking for strftime... yes >checking vfork.h usability... no >checking vfork.h presence... no >checking for vfork.h... no >checking for fork... yes >checking for vfork... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking for vprintf... yes >checking for _doprnt... no >checking for memmove... yes >checking X11/Xlib.h usability... yes >checking X11/Xlib.h presence... yes >checking for X11/Xlib.h... yes >checking for socket in -lc... yes >checking for main in -lm... yes >checking if docroot is given... no >checking if gcc profiling is selected... no >checking if gcov coverage is selected... no >configure: checking for EMBOSS pre-indexed databases >checking for /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/emboss/index/edam.xac... yes >checking for Java JNI... no >checking for Java JNI OS... no >checking for authorisation type... no >checking for threading type... no >checking whether to look for pdf support... yes >checking for HPDF_New in -lhpdf... yes >PDF support found >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether to look for axis2c support... no >checking if png driver is wanted... yes >checking for inflateEnd in -lz... yes >checking for png_destroy_read_struct in -lpng... yes >checking for gdImageCreateFromPng in -lgd... yes >PNG libraries found >checking for large file support... yes >checking for PCRE... yes >checking for EXPAT... yes >checking for ZLIB... yes >checking for PLPLOT... no >checking for PLPLOT... yes >checking for purify... no >checking for cygwin... no >checking for savestats... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating ajax/Makefile >config.status: creating ajax/acd/Makefile >config.status: creating ajax/ajaxdb/Makefile >config.status: creating ajax/core/Makefile >config.status: creating ajax/ensembl/Makefile >config.status: creating ajax/expat/Makefile >config.status: creating ajax/graphics/Makefile >config.status: creating ajax/pcre/Makefile >config.status: creating ajax/zlib/Makefile >config.status: creating doc/Makefile >config.status: creating doc/manuals/Makefile >config.status: creating doc/programs/Makefile >config.status: creating doc/programs/html/Makefile >config.status: creating doc/programs/text/Makefile >config.status: creating doc/tutorials/Makefile >config.status: creating emboss/Makefile >config.status: creating emboss/acd/Makefile >config.status: creating emboss/data/AAINDEX/Makefile >config.status: creating emboss/data/CODONS/Makefile >config.status: creating emboss/data/JASPAR_CNE/Makefile >config.status: creating emboss/data/JASPAR_CORE/Makefile >config.status: creating emboss/data/JASPAR_FAM/Makefile >config.status: creating emboss/data/JASPAR_PBM/Makefile >config.status: creating emboss/data/JASPAR_PBM_HLH/Makefile >config.status: creating emboss/data/JASPAR_PBM_HOMEO/Makefile >config.status: creating emboss/data/JASPAR_PHYLOFACTS/Makefile >config.status: creating emboss/data/JASPAR_POLII/Makefile >config.status: creating emboss/data/JASPAR_SPLICE/Makefile >config.status: creating emboss/data/Makefile >config.status: creating emboss/data/OBO/Makefile >config.status: creating emboss/data/PRINTS/Makefile >config.status: creating emboss/data/PROSITE/Makefile >config.status: creating emboss/data/REBASE/Makefile >config.status: creating emboss/data/TAXONOMY/Makefile >config.status: creating emboss/index/Makefile >config.status: creating jemboss/Makefile >config.status: creating jemboss/runJemboss.sh >config.status: creating jemboss/images/Makefile >config.status: creating jemboss/lib/Makefile >config.status: creating jemboss/lib/axis/Makefile >config.status: creating jemboss/resources/Makefile >config.status: creating jemboss/utils/Makefile >config.status: creating nucleus/Makefile >config.status: creating plplot/Makefile >config.status: creating plplot/lib/Makefile >config.status: creating test/Makefile >config.status: creating test/data/Makefile >config.status: creating test/embl/Makefile >config.status: creating test/genbank/Makefile >config.status: creating test/pir/Makefile >config.status: creating test/swiss/Makefile >config.status: creating test/swnew/Makefile >config.status: creating test/testdb/Makefile >config.status: creating ajax/core/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build" >make -j1 >Making all in ajax >make[1]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax' >Making all in core >make[2]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/core' >make all-am >make[3]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/core' >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajalign.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajalign.c -fPIC -DPIC -o .libs/libajax_la-ajalign.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajarr.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarr.c -fPIC -DPIC -o .libs/libajax_la-ajarr.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajassem.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajassem.c -fPIC -DPIC -o .libs/libajax_la-ajassem.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajassemread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajassemread.c -fPIC -DPIC -o .libs/libajax_la-ajassemread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajassemwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajassemwrite.c -fPIC -DPIC -o .libs/libajax_la-ajassemwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajassert.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajassert.c -fPIC -DPIC -o .libs/libajax_la-ajassert.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajbamindex.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c -fPIC -DPIC -o .libs/libajax_la-ajbamindex.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c: In function âbamIndexLoadCoreâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:720:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(magic, 1, 4, fp); > ^~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:731:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&idx->n, 4, 1, fp); > ^~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:747:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&n_bin, 4, 1, fp); > ^~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:756:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&binid, 4, 1, fp); > ^~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:765:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&binlist->n, 4, 1, fp); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:773:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(binlist->list, 16, binlist->n, fp); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:799:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&index2->n, 4, 1, fp); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbamindex.c:807:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(index2->offset, index2->n, 8, fp); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajbase.lo `test -f 'ajbase.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajbase.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajbase.c -fPIC -DPIC -o .libs/libajax_la-ajbase.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajcall.lo `test -f 'ajcall.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajcall.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajcall.c -fPIC -DPIC -o .libs/libajax_la-ajcall.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajcigar.lo `test -f 'ajcigar.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajcigar.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajcigar.c -fPIC -DPIC -o .libs/libajax_la-ajcigar.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajcod.lo `test -f 'ajcod.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajcod.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajcod.c -fPIC -DPIC -o .libs/libajax_la-ajcod.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajdan.lo `test -f 'ajdan.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajdan.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdan.c -fPIC -DPIC -o .libs/libajax_la-ajdan.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajdmx.lo `test -f 'ajdmx.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajdmx.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdmx.c -fPIC -DPIC -o .libs/libajax_la-ajdmx.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajdom.lo `test -f 'ajdom.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajdom.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdom.c -fPIC -DPIC -o .libs/libajax_la-ajdom.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajdomain.lo `test -f 'ajdomain.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajdomain.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdomain.c -fPIC -DPIC -o .libs/libajax_la-ajdomain.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajexcept.lo `test -f 'ajexcept.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajexcept.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajexcept.c -fPIC -DPIC -o .libs/libajax_la-ajexcept.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfeat.lo `test -f 'ajfeat.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfeat.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c -fPIC -DPIC -o .libs/libajax_la-ajfeat.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c: In function âfeatFeatTypeâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c:2114:11: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > while(isspace((ajint)*cp)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c: In function âfeatTagNameâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c:4352:11: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > while(isalpha((ajint)*cp)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c: In function âfeatTagSpecialAllCitationâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c:6084:10: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > if(!isdigit((ajint)*cp)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c: In function âfeatTagSpecialAllConsspliceâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c:6291:9: warning: implicit declaration of function âislowerâ [-Wimplicit-function-declaration] > if(islower((ajint)*cp++)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c: In function âfeatTagSpecialAllProteinidâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeat.c:7140:34: warning: implicit declaration of function âisupperâ [-Wimplicit-function-declaration] > else if(!isalpha(icp) || !isupper(icp)) > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfeatread.lo `test -f 'ajfeatread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfeatread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c -fPIC -DPIC -o .libs/libajax_la-ajfeatread.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c: In function âfeatGff3ProcessTagvalâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c:3139:16: warning: implicit declaration of function âisupperâ [-Wimplicit-function-declaration] > if(isupper((int)cp)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c: In function âfeatEmblOperOutâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c:4099:9: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > if(!isalpha((ajint)*cp)) return ajFalse; /* starts with location */ > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c:4100:9: warning: implicit declaration of function âislowerâ [-Wimplicit-function-declaration] > if(!islower((ajint)*cp)) return ajFalse; /* starts with location */ > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c: In function âfeatEmblLocâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatread.c:4371:21: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > if(!isdigit((ajint) *cp)) > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfeatwrite.lo `test -f 'ajfeatwrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfeatwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfeatwrite.c -fPIC -DPIC -o .libs/libajax_la-ajfeatwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfile.lo `test -f 'ajfile.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfile.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c -fPIC -DPIC -o .libs/libajax_la-ajfile.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFileNewListinPathWildâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:1527:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(dp,(struct dirent *)buf,&de) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFileNewListinPathWildExcludeâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:1629:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(dp,(struct dirent *)buf,&de) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilebuffNewPathWildâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:3222:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(dp,(struct dirent *)buf,&de) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilebuffNewPathWildExcludeâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:3325:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(dp,(struct dirent *)buf,&de) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilewildnameExistsDirâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:7138:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(dp,(struct dirent *)buf,&de) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajDirnamePrintRecursiveIgnoreâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:7475:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddDirectoryâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:7703:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddPathâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:7876:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddPathDirâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:7997:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddPathWildâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:8106:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddPathWildDirâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:8217:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFilelistAddPathWildRecursiveIgnoreâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:8423:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > !readdir_r(indir,(struct dirent *)buf,&dp) > ^ >In file included from /usr/include/features.h:410:0, > from /usr/include/sys/types.h:25, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajarch.h:33, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajdefine.h:48, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlib.h:34, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > extern int __REDIRECT (readdir_r, > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c: In function âajFileSetEofâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfile.c:2408:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&c, 1, 1, file->fp); > ^~~~~~~~~~~~~~~~~~~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfiledata.lo `test -f 'ajfiledata.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfiledata.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfiledata.c -fPIC -DPIC -o .libs/libajax_la-ajfiledata.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfileio.lo `test -f 'ajfileio.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfileio.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfileio.c -fPIC -DPIC -o .libs/libajax_la-ajfileio.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajfmt.lo `test -f 'ajfmt.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajfmt.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajfmt.c -fPIC -DPIC -o .libs/libajax_la-ajfmt.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajftp.lo `test -f 'ajftp.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajftp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajftp.c -fPIC -DPIC -o .libs/libajax_la-ajftp.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajhttp.lo `test -f 'ajhttp.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajhttp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajhttp.c -fPIC -DPIC -o .libs/libajax_la-ajhttp.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajhttp.c: In function âajHttpUrlrefParseCâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajhttp.c:719:6: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > if (isspace((int) *p)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajhttp.c: In function âajHttpUrlrefSplitPortâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajhttp.c:813:9: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > if(!isdigit((int) *p)) > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajindex.lo `test -f 'ajindex.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajindex.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajindex.c -fPIC -DPIC -o .libs/libajax_la-ajindex.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajjava.lo `test -f 'ajjava.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajjava.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajjava.c -fPIC -DPIC -o .libs/libajax_la-ajjava.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajlist.lo `test -f 'ajlist.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajlist.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajlist.c -fPIC -DPIC -o .libs/libajax_la-ajlist.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajmath.lo `test -f 'ajmath.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajmath.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajmath.c -fPIC -DPIC -o .libs/libajax_la-ajmath.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajmatrices.lo `test -f 'ajmatrices.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajmatrices.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajmatrices.c -fPIC -DPIC -o .libs/libajax_la-ajmatrices.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajmem.lo `test -f 'ajmem.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajmem.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajmem.c -fPIC -DPIC -o .libs/libajax_la-ajmem.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajmess.lo `test -f 'ajmess.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajmess.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajmess.c -fPIC -DPIC -o .libs/libajax_la-ajmess.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajnam.lo `test -f 'ajnam.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajnam.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajnam.c -fPIC -DPIC -o .libs/libajax_la-ajnam.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajnam.c: In function âajNamIsDbnameâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajnam.c:4624:10: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > if (!isalpha((int)*cp++)) > ^~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajnam.c:4632:6: warning: implicit declaration of function âisalnumâ [-Wimplicit-function-declaration] > if(!isalnum((int)*cp) && (*cp != '_')) > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajnexus.lo `test -f 'ajnexus.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajnexus.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH 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-I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajobo.c -fPIC -DPIC -o .libs/libajax_la-ajobo.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajoboread.lo `test -f 'ajoboread.c' || echo 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-O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajobowrite.lo `test -f 'ajobowrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajobowrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajobowrite.c -fPIC -DPIC -o .libs/libajax_la-ajobowrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajpat.lo `test -f 'ajpat.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajpat.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajpat.c -fPIC -DPIC -o .libs/libajax_la-ajpat.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajpdb.lo `test -f 'ajpdb.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajpdb.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajpdb.c -fPIC -DPIC -o .libs/libajax_la-ajpdb.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajpdbio.lo `test -f 'ajpdbio.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajpdbio.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajpdbio.c -fPIC -DPIC -o .libs/libajax_la-ajpdbio.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajphylo.lo `test -f 'ajphylo.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajphylo.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajphylo.c -fPIC -DPIC -o .libs/libajax_la-ajphylo.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajphylo.c: In function âajPhyloStateReadâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajphylo.c:1694:14: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > if(*cp && !isspace((int)*cp)) > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajquery.lo `test -f 'ajquery.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajquery.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajquery.c -fPIC -DPIC -o .libs/libajax_la-ajquery.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajrange.lo `test -f 'ajrange.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajrange.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajrange.c -fPIC -DPIC -o .libs/libajax_la-ajrange.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajreg.lo `test -f 'ajreg.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajreg.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajreg.c -fPIC -DPIC -o .libs/libajax_la-ajreg.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajreport.lo `test -f 'ajreport.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajreport.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajreport.c -fPIC -DPIC -o .libs/libajax_la-ajreport.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajrefseq.lo `test -f 'ajrefseq.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajrefseq.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajrefseq.c -fPIC -DPIC -o .libs/libajax_la-ajrefseq.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajrefseqread.lo `test -f 'ajrefseqread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajrefseqread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajrefseqread.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajrefseqwrite.lo `test -f 'ajrefseqwrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajrefseqwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajrefseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajresource.lo `test -f 'ajresource.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajresource.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajresource.c -fPIC -DPIC -o .libs/libajax_la-ajresource.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajresourceread.lo `test -f 'ajresourceread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajresourceread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajresourceread.c -fPIC -DPIC -o .libs/libajax_la-ajresourceread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajresourcewrite.lo `test -f 'ajresourcewrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajresourcewrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajresourcewrite.c -fPIC -DPIC -o .libs/libajax_la-ajresourcewrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseq.lo `test -f 'ajseq.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseq.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseq.c -fPIC -DPIC -o .libs/libajax_la-ajseq.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseq.c: In function âajSeqTraceâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseq.c:4505:5: warning: this âifâ clause does not guard... [-Wmisleading-indentation] > if(ajStrGetLen(seq->Doc)) > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseq.c:4508:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the âifâ > ajDebug( "Sequence:...\n%S\n", seq->Seq); > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseqabi.lo `test -f 'ajseqabi.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseqabi.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqabi.c -fPIC -DPIC -o .libs/libajax_la-ajseqabi.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseqbam.lo `test -f 'ajseqbam.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseqbam.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqbam.c -fPIC -DPIC -o .libs/libajax_la-ajseqbam.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseqread.lo `test -f 'ajseqread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseqread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqread.c -fPIC -DPIC -o .libs/libajax_la-ajseqread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseqtype.lo `test -f 'ajseqtype.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseqtype.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqtype.c -fPIC -DPIC -o .libs/libajax_la-ajseqtype.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajseqwrite.lo `test -f 'ajseqwrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajseqwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajseqwrite.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqwrite.c: In function âajSeqoutGetCheckgcgâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajseqwrite.c:10031:19: warning: implicit declaration of function âtoupperâ [-Wimplicit-function-declaration] > check += count * toupper((ajint) cp[i]); > ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajsort.lo `test -f 'ajsort.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajsort.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH 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-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajurlwrite.c -fPIC -DPIC -o .libs/libajax_la-ajurlwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajutil.lo `test -f 'ajutil.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajutil.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH 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-DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajvarwrite.lo `test -f 'ajvarwrite.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajvarwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajvarwrite.c -fPIC -DPIC -o .libs/libajax_la-ajvarwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH 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-DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajxml.lo `test -f 'ajxml.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajxml.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajxml.c -fPIC -DPIC -o .libs/libajax_la-ajxml.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c -o libajax_la-ajxmlread.lo `test -f 'ajxmlread.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/'`ajxmlread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c 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-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core/ajxmlwrite.c -fPIC -DPIC -o .libs/libajax_la-ajxmlwrite.o >/bin/sh ../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wall -O2 -version-info 6:5:0 -Wl,-O1 -Wl,--as-needed -o libajax.la -rpath /usr/lib64 libajax_la-ajalign.lo libajax_la-ajarr.lo libajax_la-ajassem.lo libajax_la-ajassemread.lo libajax_la-ajassemwrite.lo libajax_la-ajassert.lo libajax_la-ajbamindex.lo libajax_la-ajbase.lo libajax_la-ajcall.lo libajax_la-ajcigar.lo libajax_la-ajcod.lo libajax_la-ajdan.lo libajax_la-ajdmx.lo libajax_la-ajdom.lo libajax_la-ajdomain.lo libajax_la-ajexcept.lo libajax_la-ajfeat.lo libajax_la-ajfeatread.lo libajax_la-ajfeatwrite.lo libajax_la-ajfile.lo libajax_la-ajfiledata.lo libajax_la-ajfileio.lo libajax_la-ajfmt.lo libajax_la-ajftp.lo libajax_la-ajhttp.lo libajax_la-ajindex.lo libajax_la-ajjava.lo libajax_la-ajlist.lo libajax_la-ajmath.lo libajax_la-ajmatrices.lo libajax_la-ajmem.lo libajax_la-ajmess.lo libajax_la-ajnam.lo libajax_la-ajnexus.lo libajax_la-ajobo.lo libajax_la-ajoboread.lo libajax_la-ajobowrite.lo libajax_la-ajpat.lo libajax_la-ajpdb.lo libajax_la-ajpdbio.lo libajax_la-ajphylo.lo libajax_la-ajquery.lo libajax_la-ajrange.lo libajax_la-ajreg.lo libajax_la-ajreport.lo libajax_la-ajrefseq.lo libajax_la-ajrefseqread.lo libajax_la-ajrefseqwrite.lo libajax_la-ajresource.lo libajax_la-ajresourceread.lo libajax_la-ajresourcewrite.lo libajax_la-ajseq.lo libajax_la-ajseqabi.lo libajax_la-ajseqbam.lo libajax_la-ajseqread.lo libajax_la-ajseqtype.lo libajax_la-ajseqwrite.lo libajax_la-ajsort.lo libajax_la-ajsql.lo libajax_la-ajstr.lo libajax_la-ajsys.lo libajax_la-ajtable.lo libajax_la-ajtagval.lo libajax_la-ajtax.lo libajax_la-ajtaxread.lo libajax_la-ajtaxwrite.lo libajax_la-ajtext.lo libajax_la-ajtextread.lo libajax_la-ajtextwrite.lo libajax_la-ajtime.lo libajax_la-ajtranslate.lo libajax_la-ajtree.lo libajax_la-ajurl.lo libajax_la-ajurlread.lo libajax_la-ajurlwrite.lo libajax_la-ajutil.lo libajax_la-ajvar.lo libajax_la-ajvarbcf.lo libajax_la-ajvarread.lo libajax_la-ajvarwrite.lo libajax_la-ajvector.lo libajax_la-ajxml.lo libajax_la-ajxmlread.lo libajax_la-ajxmlwrite.lo -lexpat -lpcre -lz -lm -lhpdf -lgd -lpng -lz -lm >libtool: link: x86_64-pc-linux-gnu-gcc -shared -fPIC -DPIC .libs/libajax_la-ajalign.o .libs/libajax_la-ajarr.o .libs/libajax_la-ajassem.o .libs/libajax_la-ajassemread.o .libs/libajax_la-ajassemwrite.o .libs/libajax_la-ajassert.o .libs/libajax_la-ajbamindex.o .libs/libajax_la-ajbase.o .libs/libajax_la-ajcall.o .libs/libajax_la-ajcigar.o .libs/libajax_la-ajcod.o .libs/libajax_la-ajdan.o .libs/libajax_la-ajdmx.o .libs/libajax_la-ajdom.o .libs/libajax_la-ajdomain.o .libs/libajax_la-ajexcept.o .libs/libajax_la-ajfeat.o .libs/libajax_la-ajfeatread.o .libs/libajax_la-ajfeatwrite.o .libs/libajax_la-ajfile.o .libs/libajax_la-ajfiledata.o .libs/libajax_la-ajfileio.o .libs/libajax_la-ajfmt.o .libs/libajax_la-ajftp.o .libs/libajax_la-ajhttp.o .libs/libajax_la-ajindex.o .libs/libajax_la-ajjava.o .libs/libajax_la-ajlist.o .libs/libajax_la-ajmath.o .libs/libajax_la-ajmatrices.o .libs/libajax_la-ajmem.o .libs/libajax_la-ajmess.o .libs/libajax_la-ajnam.o .libs/libajax_la-ajnexus.o .libs/libajax_la-ajobo.o .libs/libajax_la-ajoboread.o .libs/libajax_la-ajobowrite.o .libs/libajax_la-ajpat.o .libs/libajax_la-ajpdb.o .libs/libajax_la-ajpdbio.o .libs/libajax_la-ajphylo.o .libs/libajax_la-ajquery.o .libs/libajax_la-ajrange.o .libs/libajax_la-ajreg.o .libs/libajax_la-ajreport.o .libs/libajax_la-ajrefseq.o .libs/libajax_la-ajrefseqread.o .libs/libajax_la-ajrefseqwrite.o .libs/libajax_la-ajresource.o .libs/libajax_la-ajresourceread.o .libs/libajax_la-ajresourcewrite.o .libs/libajax_la-ajseq.o .libs/libajax_la-ajseqabi.o .libs/libajax_la-ajseqbam.o .libs/libajax_la-ajseqread.o .libs/libajax_la-ajseqtype.o .libs/libajax_la-ajseqwrite.o .libs/libajax_la-ajsort.o .libs/libajax_la-ajsql.o .libs/libajax_la-ajstr.o .libs/libajax_la-ajsys.o .libs/libajax_la-ajtable.o .libs/libajax_la-ajtagval.o .libs/libajax_la-ajtax.o .libs/libajax_la-ajtaxread.o .libs/libajax_la-ajtaxwrite.o .libs/libajax_la-ajtext.o .libs/libajax_la-ajtextread.o .libs/libajax_la-ajtextwrite.o .libs/libajax_la-ajtime.o .libs/libajax_la-ajtranslate.o .libs/libajax_la-ajtree.o .libs/libajax_la-ajurl.o .libs/libajax_la-ajurlread.o .libs/libajax_la-ajurlwrite.o .libs/libajax_la-ajutil.o .libs/libajax_la-ajvar.o .libs/libajax_la-ajvarbcf.o .libs/libajax_la-ajvarread.o .libs/libajax_la-ajvarwrite.o .libs/libajax_la-ajvector.o .libs/libajax_la-ajxml.o .libs/libajax_la-ajxmlread.o .libs/libajax_la-ajxmlwrite.o -Wl,--as-needed -lexpat -lpcre /usr/lib64/libhpdf.so -L/usr/lib -lgd -lpng -lz -lm -O2 -march=native -O2 -Wl,-O1 -Wl,-soname -Wl,libajax.so.6 -o .libs/libajax.so.6.0.5 >libtool: link: (cd ".libs" && rm -f "libajax.so.6" && ln -s "libajax.so.6.0.5" "libajax.so.6") >libtool: link: (cd ".libs" && rm -f "libajax.so" && ln -s "libajax.so.6.0.5" "libajax.so") >libtool: link: ( cd ".libs" && rm -f "libajax.la" && ln -s "../libajax.la" "libajax.la" ) >make[3]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/core' >make[2]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/core' >Making all in graphics >make[2]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/graphics' >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics -I../../ajax/core -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/plplot -O2 -pipe -march=native -Wall -O2 -c -o libajaxg_la-ajgraph.lo `test -f 'ajgraph.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/'`ajgraph.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics -I../../ajax/core -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/plplot -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c -fPIC -DPIC -o .libs/libajaxg_la-ajgraph.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsGetCharsizeâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1843:9: warning: passing argument 1 of âc_plgchrâ from incompatible pointer type [-Wincompatible-pointer-types] > plgchr(defheight,currentscale); > ^~~~~~~~~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1109:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgchr( PLFLT_NC_SCALAR p_def, PLFLT_NC_SCALAR p_ht ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1843:19: warning: passing argument 2 of âc_plgchrâ from incompatible pointer type [-Wincompatible-pointer-types] > plgchr(defheight,currentscale); > ^~~~~~~~~~~~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1109:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgchr( PLFLT_NC_SCALAR p_def, PLFLT_NC_SCALAR p_ht ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsGetParamsPageâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1908:10: warning: passing argument 1 of âc_plgpageâ from incompatible pointer type [-Wincompatible-pointer-types] > plgpage(xp,yp,xleng,yleng,xoff,yoff); > ^~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1189:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgpage( PLFLT_NC_SCALAR p_xp, PLFLT_NC_SCALAR p_yp, > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1908:13: warning: passing argument 2 of âc_plgpageâ from incompatible pointer type [-Wincompatible-pointer-types] > plgpage(xp,yp,xleng,yleng,xoff,yoff); > ^~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1189:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgpage( PLFLT_NC_SCALAR p_xp, PLFLT_NC_SCALAR p_yp, > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposBoxâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2333:16: warning: passing argument 2 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2333:20: warning: passing argument 3 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposBoxFillâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2378:15: warning: passing argument 2 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2378:19: warning: passing argument 3 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposCircleâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2422:21: warning: passing argument 2 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(361, xa,ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2422:24: warning: passing argument 3 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(361, xa,ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposDiaâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2463:19: warning: passing argument 2 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2463:23: warning: passing argument 3 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposDiaFillâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2502:18: warning: passing argument 2 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2502:22: warning: passing argument 3 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposRectâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2588:16: warning: passing argument 2 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2588:20: warning: passing argument 3 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(5, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawposRectFillâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2634:15: warning: passing argument 2 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2634:19: warning: passing argument 3 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(4, xa, ya); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawsetDotsâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2900:18: warning: passing argument 1 of âGraphSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphSymbols(xx, yy, num, 17); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:94:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphSymbols(float *xx1, float *yy1, ajuint numofdots, > ^~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:2900:22: warning: passing argument 2 of âGraphSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphSymbols(xx, yy, num, 17); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:94:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphSymbols(float *xx1, float *yy1, ajuint numofdots, > ^~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawsetPolyâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3002:21: warning: passing argument 2 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(num, xx, yy); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3002:25: warning: passing argument 3 of âGraphArrayâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphArray(num, xx, yy); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:55:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphArray(ajuint numofpoints, > ^~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawsetPolyFillâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3025:20: warning: passing argument 2 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(num, xx, yy); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3025:24: warning: passing argument 3 of âGraphFillâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphFill(num, xx, yy); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:72:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphFill(ajuint numofpoints, float *x, float *y); > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsDrawsetSymbolsâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3051:18: warning: passing argument 1 of âGraphSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphSymbols(xx, yy, num, symbol); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:94:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphSymbols(float *xx1, float *yy1, ajuint numofdots, > ^~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3051:22: warning: passing argument 2 of âGraphSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphSymbols(xx, yy, num, symbol); > ^~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:94:17: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > static void GraphSymbols(float *xx1, float *yy1, ajuint numofdots, > ^~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsCalcCharsizeâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3155:27: warning: passing argument 1 of âajGraphicsGetCharsizeâ from incompatible pointer type [-Wincompatible-pointer-types] > ajGraphicsGetCharsize(&origcharsize,&origcharht); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1829:6: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > void ajGraphicsGetCharsize(float *defheight, float *currentscale) > ^~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3155:41: warning: passing argument 2 of âajGraphicsGetCharsizeâ from incompatible pointer type [-Wincompatible-pointer-types] > ajGraphicsGetCharsize(&origcharsize,&origcharht); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:1829:6: note: expected âfloat *â but argument is of type âPLFLT * {aka double *}â > void ajGraphicsGetCharsize(float *defheight, float *currentscale) > ^~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsCalcCoordâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3198:8: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > xy = (float *)AJALLOC( 2*sizeof(float) ); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphicsUnusedâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3363:25: warning: passing argument 2 of âGraphCheckPointsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphCheckPoints(0, &f, &f); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:62:17: note: expected âconst PLFLT * {aka const double *}â but argument is of type âfloat *â > static void GraphCheckPoints(ajint n, const PLFLT *x, const PLFLT *y); > ^~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3363:29: warning: passing argument 3 of âGraphCheckPointsâ from incompatible pointer type [-Wincompatible-pointer-types] > GraphCheckPoints(0, &f, &f); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:62:17: note: expected âconst PLFLT * {aka const double *}â but argument is of type âfloat *â > static void GraphCheckPoints(ajint n, const PLFLT *x, const PLFLT *y); > ^~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âajGraphGetParamsPageâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:4618:10: warning: passing argument 1 of âc_plgpageâ from incompatible pointer type [-Wincompatible-pointer-types] > plgpage(xp,yp,xleng,yleng,xoff,yoff); > ^~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1189:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgpage( PLFLT_NC_SCALAR p_xp, PLFLT_NC_SCALAR p_yp, > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:4618:13: warning: passing argument 2 of âc_plgpageâ from incompatible pointer type [-Wincompatible-pointer-types] > plgpage(xp,yp,xleng,yleng,xoff,yoff); > ^~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1189:1: note: expected âPLFLT_NC_SCALAR {aka double *}â but argument is of type âfloat *â > c_plgpage( PLFLT_NC_SCALAR p_xp, PLFLT_NC_SCALAR p_yp, > ^~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âGraphArrayâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:7429:22: warning: passing argument 2 of âc_pllineâ from incompatible pointer type [-Wincompatible-pointer-types] > plline(numofpoints, x,y); > ^ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1379:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plline( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:7429:24: warning: passing argument 3 of âc_pllineâ from incompatible pointer type [-Wincompatible-pointer-types] > plline(numofpoints, x,y); > ^ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1379:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plline( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âGraphFillâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:7562:25: warning: passing argument 2 of âc_plfillâ from incompatible pointer type [-Wincompatible-pointer-types] > plfill(numofpoints, x, y); > ^ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1084:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plfill( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:7562:28: warning: passing argument 3 of âc_plfillâ from incompatible pointer type [-Wincompatible-pointer-types] > plfill(numofpoints, x, y); > ^ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1084:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plfill( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âGraphxyGeneralâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9643:42: warning: passing argument 2 of âajGraphicsDrawsetSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > (graphdata->x), (graphdata->y), 9); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3048:6: note: expected âPLFLT * {aka double *}â but argument is of type âfloat *â > void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy, > ^~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9643:58: warning: passing argument 3 of âajGraphicsDrawsetSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > (graphdata->x), (graphdata->y), 9); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3048:6: note: expected âPLFLT * {aka double *}â but argument is of type âfloat *â > void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy, > ^~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9712:42: warning: passing argument 2 of âajGraphicsDrawsetSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > (graphdata->x), (graphdata->y), 9); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3048:6: note: expected âPLFLT * {aka double *}â but argument is of type âfloat *â > void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy, > ^~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9712:58: warning: passing argument 3 of âajGraphicsDrawsetSymbolsâ from incompatible pointer type [-Wincompatible-pointer-types] > (graphdata->x), (graphdata->y), 9); > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:3048:6: note: expected âPLFLT * {aka double *}â but argument is of type âfloat *â > void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy, > ^~~~~~~~~~~~~~~~~~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c: In function âGraphSymbolsâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9975:22: warning: passing argument 2 of âc_plpoinâ from incompatible pointer type [-Wincompatible-pointer-types] > plpoin(numofdots,xx1,yy1, symbol); > ^~~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1557:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plpoin( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y, PLINT code ); > ^~~~~~~~ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:9975:26: warning: passing argument 3 of âc_plpoinâ from incompatible pointer type [-Wincompatible-pointer-types] > plpoin(numofdots,xx1,yy1, symbol); > ^~~ >In file included from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.h:35:0, > from /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajgraph.c:35: >/usr/include/plplot/plplot.h:1557:1: note: expected âPLFLT_VECTOR {aka const double *}â but argument is of type âfloat *â > c_plpoin( PLINT n, PLFLT_VECTOR x, PLFLT_VECTOR y, PLINT code ); > ^~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics -I../../ajax/core -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/plplot -O2 -pipe -march=native -Wall -O2 -c -o libajaxg_la-ajhist.lo `test -f 'ajhist.c' || echo '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/'`ajhist.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics -I../../ajax/core -I/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/core -DNO_AUTH -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/plplot -O2 -pipe -march=native -Wall -O2 -c /var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c -fPIC -DPIC -o .libs/libajaxg_la-ajhist.o >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c: In function âajHistDisplayâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:410:8: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[j]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:437:8: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[j]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:457:8: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[j]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:474:7: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[0]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:539:11: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[i]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:592:11: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[i]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:636:11: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > data = thys->hists[i]->data; > ^ >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c: In function âajHistDataAddâ: >/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0/ajax/graphics/ajhist.c:1122:33: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] > thys->hists[indexnum]->data = data; > ^ >/bin/sh ../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -I/usr/include/plplot -O2 -pipe -march=native -Wall -O2 -version-info 6:5:0 -Wl,-O1 -Wl,--as-needed -o libajaxg.la -rpath /usr/lib64 libajaxg_la-ajgraph.lo libajaxg_la-ajhist.lo ../core/libajax.la -Llib64 -lplplot -lm -lhpdf -lgd -lpng -lz -lm >../../libtool: line 7541: cd: lib64: No such file or directory >libtool: error: cannot determine absolute directory name of 'lib64' >make[2]: *** [Makefile:474: libajaxg.la] Error 1 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax/graphics' >make[1]: *** [Makefile:410: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build/ajax' >make: *** [Makefile:449: all-recursive] Error 1 > * ERROR: sci-biology/emboss-6.6.0::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/emboss-6.6.0::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/emboss-6.6.0::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:emboss-6.6.0:20170219-110851.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/emboss-6.6.0/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/emboss-6.6.0/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/emboss-6.6.0/work/emboss-6.6.0_build' > * S: '/var/tmp/portage/sci-biology/emboss-6.6.0/work/EMBOSS-6.6.0'
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