build.log

build.log (text/plain), 18.06 KB, created by Thomas Beutin on 2016-12-19 09:05:53 UTC

[32;01m * [39;49;00mPackage:    sci-mathematics/octave-4.2.0
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        X abi_x86_64 amd64 curl elibc_glibc fftw glpk gnuplot hdf5 imagemagick java kernel_linux opengl openssl portaudio postscript qhull qrupdate qt5 readline sndfile sparse userland_GNU zlib
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
 [32;01m*[0m Using: oracle-jdk-bin-1.8
>>> Unpacking source...
>>> Unpacking octave-4.2.0.tar.gz to /var/tmp/portage/sci-mathematics/octave-4.2.0/work
>>> Source unpacked in /var/tmp/portage/sci-mathematics/octave-4.2.0/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0 ...
 [32;01m*[0m Applying octave-4.2.0-texi.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-disable-getcwd-path-max-test-as-it-is-too-slow.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-imagemagick-configure.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-imagemagick.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-pkgbuilddir.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-ncurses-pkgconfig.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying octave-4.2.0-zlib-underlinking.patch ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0' ...
 [32;01m*[0m Running libtoolize --install --copy --force --automake ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal -I m4 ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf --force ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoheader ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --force-missing ...
[A[160C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: octave-4.2.0/
 [32;01m*[0m Running elibtoolize in: octave-4.2.0/build-aux/
 [32;01m*[0m   Applying portage/1.2.0 patch ...
 [32;01m*[0m   Applying sed/1.5.6 patch ...
 [32;01m*[0m   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0 ...
 * econf: updating octave-4.2.0/build-aux/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating octave-4.2.0/build-aux/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/octave-4.2.0 --htmldir=/usr/share/doc/octave-4.2.0/html --libdir=/usr/lib64 --with-magick=ImageMagick --localstatedir=/var/state/octave --with-blas=-lptf77blas  --with-lapack=-lptlapack -lptf77blas -lptcblas  --disable-64 --disable-jit --enable-shared --with-z --with-bz2 --without-OSMesa --disable-static --disable-docs --enable-java --enable-readline --with-curl --with-fftw3 --with-fftw3f --enable-fftw-threads --with-glpk --with-hdf5 --with-opengl --with-fltk --with-openssl --with-portaudio --with-qhull --with-qrupdate --with-qt=5 --with-sndfile --with-arpack --with-umfpack --with-colamd --with-ccolamd --with-cholmod --with-cxsparse --with-x
checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether UID '250' is supported by ustar format... yes
checking whether GID '250' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... -std=gnu11
checking dependency style of mpicc -std=gnu11... none
checking how to run the C preprocessor... mpicc -std=gnu11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
defining octlibdir to be ${libdir}/octave/${version}
defining archlibdir to be ${libexecdir}/octave/${version}/exec/${canonical_host_type}
defining localarchlibdir to be ${libexecdir}/octave/site/exec/${canonical_host_type}
defining localapiarchlibdir to be ${libexecdir}/octave/${api_version}/site/exec/${canonical_host_type}
defining localverarchlibdir to be ${libexecdir}/octave/${version}/site/exec/${canonical_host_type}
defining octfiledir to be ${libdir}/octave/${version}/oct/${canonical_host_type}
defining localoctfiledir to be ${libdir}/octave/site/oct/${canonical_host_type}
defining localapioctfiledir to be ${libdir}/octave/site/oct/${api_version}/${canonical_host_type}
defining localveroctfiledir to be ${libdir}/octave/${version}/site/oct/${canonical_host_type}
defining octincludedir to be ${includedir}/octave-${version}/octave
defining fcnfiledir to be ${datadir}/octave/${version}/m
defining localfcnfiledir to be ${datadir}/octave/site/m
defining localapifcnfiledir to be ${datadir}/octave/site/${api_version}/m
defining localverfcnfiledir to be ${datadir}/octave/${version}/site/m
defining octetcdir to be ${datadir}/octave/${version}/etc
defining octlocaledir to be ${datadir}/octave/${version}/locale
defining doc_cache_file to be ${octetcdir}/doc-cache
defining octtestsdir to be ${octetcdir}/tests
defining texi_macros_file to be ${octetcdir}/macros.texi
defining imagedir to be ${datadir}/octave/${version}/imagelib
defining octdatadir to be ${datadir}/octave/${version}/data
defining startupfiledir to be ${fcnfiledir}/startup
defining localstartupfiledir to be ${localfcnfiledir}/startup
defining man1dir to be ${mandir}/man1
defining man1ext to be .1
defining infofile to be ${infodir}/octave.info
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for gawk... (cached) gawk
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for gfind... no
checking for find... find
checking for a usable sed... /bin/sed
checking for perl... perl
checking for gperf... gperf
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
defining LFLAGS to be -I
checking for bison... bison -y
checking syntax of bison api.prefix (or name-prefix) declaration... api brace
checking syntax of bison push/pull declaration... dash 
checking for makeinfo... makeinfo
checking for texi2dvi... texi2dvi
checking for texi2pdf... texi2pdf
checking whether ln -s works... yes
checking for desktop-file-install... desktop-file-install
checking for gs... gs
checking for gnuplot... gnuplot
checking for less... less
checking for python... python
checking for icotool... no
configure: WARNING: 

I didn't find icotool, but it's only a problem if you need to
reconstruct octave-logo.ico, which is the case if you're building from
VCS sources.

checking for rsvg-convert... rsvg-convert
configure: WARNING: building documentation disabled; make dist will fail
configure: defining __NO_MATH_INLINES avoids buggy GNU libc exp function
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking for mpicxx option to enable C++11 features... -std=gnu++11
checking dependency style of mpicxx -std=gnu++11... none
checking how to run the C++ preprocessor... mpicxx -std=gnu++11 -E
checking how to run the C preprocessor... mpicc -std=gnu11 -E
checking whether mpicc -std=gnu11 needs -traditional... no
checking for Minix Amsterdam compiler... no
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar
checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking C compiler version number... 4.9.3
checking C++ compiler version number... 4.9.3
checking whether stl_algo.h is broken... no
checking if compiler needs -Werror to reject unknown flags... no
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for OpenMP flag of C compiler... -fopenmp
checking for OpenMP flag of C++ compiler... -fopenmp
checking omp.h usability... yes
checking omp.h presence... yes
checking for omp.h... yes
checking for omp_get_num_threads... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by mpicc -std=gnu11... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... (cached) x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from mpicc -std=gnu11 object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc -std=gnu11 supports -fno-rtti -fno-exceptions... no
checking for mpicc -std=gnu11 option to produce PIC... -fPIC -DPIC
checking if mpicc -std=gnu11 PIC flag -fPIC -DPIC works... yes
checking if mpicc -std=gnu11 static flag -static works... no
checking if mpicc -std=gnu11 supports -c -o file.o... yes
checking if mpicc -std=gnu11 supports -c -o file.o... (cached) yes
checking whether the mpicc -std=gnu11 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... yes
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... mpicxx -std=gnu++11 -E
checking for ld used by mpicxx -std=gnu++11... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the mpicxx -std=gnu++11 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for mpicxx -std=gnu++11 option to produce PIC... -fPIC -DPIC
checking if mpicxx -std=gnu++11 PIC flag -fPIC -DPIC works... yes
checking if mpicxx -std=gnu++11 static flag -static works... no
checking if mpicxx -std=gnu++11 supports -c -o file.o... yes
checking if mpicxx -std=gnu++11 supports -c -o file.o... (cached) yes
checking whether the mpicxx -std=gnu++11 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: defining FPICFLAG to be -fPIC
configure: defining CPICFLAG to be -fPIC
configure: defining CXXPICFLAG to be -fPIC
configure: defining SH_LD to be mpicxx -std=gnu++11
configure: defining SH_LDFLAGS to be -shared
configure: defining DL_LD to be mpicxx -std=gnu++11
configure: defining DL_LDFLAGS to be -shared
configure: defining MKOCTFILE_DL_LDFLAGS to be -shared -Wl,-Bsymbolic
configure: defining NO_OCT_FILE_STRIP to be false
configure: defining TEMPLATE_AR to be x86_64-pc-linux-gnu-ar
configure: defining TEMPLATE_ARFLAGS to be cr
configure: defining CRUFT_DLL_DEFS to be 
configure: defining OCTAVE_DLL_DEFS to be 
configure: defining OCTINTERP_DLL_DEFS to be 
configure: defining OCTGUI_DLL_DEFS to be 
configure: defining OCTGRAPHICS_DLL_DEFS to be 
configure: defining library_path_var to be LD_LIBRARY_PATH
checking for sin in -lm... yes
checking for x86_64-pc-linux-gnu-gfortran... mpif77
checking whether we are using the GNU Fortran 77 compiler... no
checking whether mpif77 accepts -g... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for mpif77 option to produce PIC... 
checking if mpif77 static flag  works... no
checking if mpif77 supports -c -o file.o... no
checking if mpif77 supports -c -o file.o... (cached) no
checking whether the mpif77 linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether a usable Fortran compiler was found... yes
checking how to get verbose linking output from mpif77... configure: WARNING: compilation failed

checking for Fortran 77 libraries of mpif77... 
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... configure: error: in `/var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0':
configure: error: cannot compile a simple Fortran program
See `config.log' for more details

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0/config.log
 [31;01m*[0m ERROR: sci-mathematics/octave-4.2.0::gentoo failed (configure phase):
 [31;01m*[0m   econf failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m               ebuild.sh, line  115:  Called src_configure
 [31;01m*[0m             environment, line 5209:  Called econf '--with-magick=ImageMagick' '--localstatedir=/var/state/octave' '--with-blas=-lptf77blas ' '--with-lapack=-lptlapack -lptf77blas -lptcblas ' '--disable-64' '--disable-jit' '--enable-shared' '--with-z' '--with-bz2' '--without-OSMesa' '--disable-static' '--disable-docs' '--enable-java' '--enable-readline' '--with-curl' '--with-fftw3' '--with-fftw3f' '--enable-fftw-threads' '--with-glpk' '--with-hdf5' '--with-opengl' '--with-fltk' '--with-openssl' '--with-portaudio' '--with-qhull' '--with-qrupdate' '--with-qt=5' '--with-sndfile' '--with-arpack' '--with-umfpack' '--with-colamd' '--with-ccolamd' '--with-cholmod' '--with-cxsparse' '--with-x'
 [31;01m*[0m        phase-helpers.sh, line  662:  Called __helpers_die 'econf failed'
 [31;01m*[0m   isolated-functions.sh, line  117:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		die "$@"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-mathematics/octave-4.2.0::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-mathematics/octave-4.2.0::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=oracle-jdk-bin-1.8  CLASSPATH="" JAVA_HOME="/opt/oracle-jdk-bin-1.8.0.112"
JAVACFLAGS="-source 1.6 -target 1.6" COMPILER=""
and of course, the output of emerge --info =octave-4.2.0
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-mathematics/octave-4.2.0/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/octave-4.2.0/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0'
 [31;01m*[0m S: '/var/tmp/portage/sci-mathematics/octave-4.2.0/work/octave-4.2.0'