[patch] 0001-dev-python-rpy-bump-to-2.8.3.patch

0001-dev-python-rpy-bump-to-2.8.3.patch (text/plain), 4.00 KB, created by eroen on 2016-11-05 18:04:19 UTC

From f0bddbe4656837cb60a8baa9ad3bf13caed3c1a5 Mon Sep 17 00:00:00 2001
From: eroen <[e-mail]>
Date: Sat, 5 Nov 2016 19:02:04 +0100
Subject: [PATCH] dev-python/rpy - bump to 2.8.3

X-Gentoo-Bug: 598970
X-Gentoo-Bug-URL: https://bugs.gentoo.org/show_bug.cgi?id=598970
---
 dev-python/rpy/Manifest         |  1 +
 dev-python/rpy/rpy-2.8.3.ebuild | 63 +++++++++++++++++++++++++++++++++++++++++
 2 files changed, 64 insertions(+)
 create mode 100644 dev-python/rpy/rpy-2.8.3.ebuild

diff --git a/dev-python/rpy/Manifest b/dev-python/rpy/Manifest
index b5e9402..7c90d58 100644
--- a/dev-python/rpy/Manifest
+++ b/dev-python/rpy/Manifest
@@ -6,3 +6,4 @@ DIST rpy2-2.7.5.tar.gz 177407 SHA256 0d88f7fff21fbef523c8678ed8f850a36052edca4ce
 DIST rpy2-2.7.6.tar.gz 177562 SHA256 ea35a2f37fd36e8af069731bf1421fbb2d3f8550bcb55fde3bebf0bcb1b00a5a SHA512 03c1f62aa367049815504ecea8bb3ff82dee779167ab59eea148e8d631e50151d4ce1805327ddf3b06821a767aab162c613a32d73e814a832d79158b455aab9c WHIRLPOOL 2df3db91e8a8132dbf25703fbb60aa7f17eb63faa56101c5e1697e9a37a21b7545629382643ac5d9420a9953c4d41ef2dc196dd50547d4d1119ec08fb5e0262e
 DIST rpy2-2.7.7.tar.gz 178098 SHA256 bf17d49c83f856a9ca537a7746c5e5edced23c3a181b89b61cb959a5db90339f SHA512 66bb901150d256a2373aa52a4d05bd5cb93acf58e3f21cd55bf5d0f8f204953898b6dc5ebffa26e06b9ab76982a1cc31f0011b8520a059b071033f54e0b8836b WHIRLPOOL 1621345954c54b7250a93ec8fb1ca1ce110d6d9e4391ca023436eef1a70c69b4cdee0a8b01982706e4b6daba5f0fc74770b0ac4517642fb6c4d4ed148ef4eb97
 DIST rpy2-2.7.8.tar.gz 178334 SHA256 4f51bcdddea01a63e624f4b38de4f6b10a2466d82fd7e890791a07b06e51781d SHA512 adbc83c8003963219038b541e0b5d1736eb515fda77e277462e87cd1dfdc39b225bb73a659f62dc7fb1d7678a415047153fa4861328dc0ecf8ba450b3748150e WHIRLPOOL 4c1ffcbd88875223d80f1b078dbf1d8c59b85765b8b106a577d00f0d219560dbba6f5d2b7b66ac59434791781c0b1665c5bbee19f402fa4e1a0fdaa6b4db3852
+DIST rpy2-2.8.3.tar.gz 186785 SHA256 24c2ea1c0d7321e6913d5d185efa19f29e920ff8e8afbc5c757f894f61c96873 SHA512 ce6798a1d9301e15b4974f00b4901b535899a7fc0e5d5d751b35875830796d78697987beda6c1f91945d80acaf430019614793b97470ac9a2cc6e72f702874bd WHIRLPOOL f7a772132f353511e8af305a34cfea88c9dc11ae708e528b9bc26d44f3fde0f92f6039acc65a82aabdd4ad2ef40e6021fc9783c04e2d758a859fde6db696da31
diff --git a/dev-python/rpy/rpy-2.8.3.ebuild b/dev-python/rpy/rpy-2.8.3.ebuild
new file mode 100644
index 00000000..e55e593
--- /dev/null
+++ b/dev-python/rpy/rpy-2.8.3.ebuild
@@ -0,0 +1,63 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
+PYTHON_REQ_USE="sqlite"
+
+inherit distutils-r1 flag-o-matic virtualx
+
+MYSLOT=2
+MY_PN=${PN}${MYSLOT}
+MY_P=${MY_PN}-${PV}
+
+DESCRIPTION="Python interface to the R Programming Language"
+HOMEPAGE="http://rpy.sourceforge.net/ https://pypi.python.org/pypi/rpy2"
+SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz"
+
+LICENSE="AGPL-3 GPL-2 LGPL-2.1 MPL-1.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+
+RDEPEND="
+	>=dev-lang/R-3.2
+	dev-python/numpy[${PYTHON_USEDEP}]
+	>=dev-python/pandas-0.13.1[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
+	virtual/python-singledispatch[${PYTHON_USEDEP}]
+"
+DEPEND="${RDEPEND}
+	test? ( >=dev-lang/R-3.2[X,png] )
+	dev-python/setuptools[${PYTHON_USEDEP}]"
+PDEPEND="dev-python/ipython[${PYTHON_USEDEP}]"
+
+# ggplot2 is an optional test dep but not in portage
+S="${WORKDIR}/${MY_P}"
+
+# Tarball absent of doc files in doc folder
+# https://bitbucket.org/rpy2/rpy2/issues/229
+
+python_prepare() {
+	if ! python_is_python3; then
+		# https://bitbucket.org/rpy2/rpy2/pull-requests/56
+		sed -e '1i# coding=utf-8' \
+			-i rpy/rinterface/tests/test_SexpClosure.py \
+			-i rpy/rinterface/tests/test_SexpEnvironment.py || die
+	fi
+}
+
+python_compile() {
+	if ! python_is_python3; then
+		local CFLAGS=${CFLAGS}
+		append-cflags -fno-strict-aliasing
+	fi
+	distutils-r1_python_compile
+}
+
+python_test() {
+	cd "${BUILD_DIR}"/lib || die
+	virtx ${PYTHON} -m 'rpy2.tests' || die
+}
-- 
2.10.2