Attachment 450236 Details for Bug 597142 – build.log

build.log

build.log (text/plain), 28.65 KB, created by Jeff Kowalczyk on 2016-10-14 23:29:07 UTC

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Creator: Jeff Kowalczyk

Created: 2016-10-14 23:29:07 UTC

Size: 28.65 KB

patch

obsolete

>[32;01m * [39;49;00mPackage:    dev-python/pytables-3.3.0
>[32;01m * [39;49;00mRepository: jfkw
>[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 python_targets_python3_5 userland_GNU
>[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>>> Unpacking source...
>>>> Unpacking tables-3.3.0.tar.gz to /var/tmp/portage/dev-python/pytables-3.3.0/work
>>>> Source unpacked in /var/tmp/portage/dev-python/pytables-3.3.0/work
>>>> Preparing source in /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0 ...
> [32;01m*[0m Applying pytables-3.2.0-blosc.patch ...
>[A[161C [34;01m[ [32;01mok[34;01m ][0m
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0 ...
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0 ...
> [32;01m*[0m python2_7: running distutils-r1_run_phase python_compile
>/usr/bin/python2.7 setup.py build
>warning: tables/utilsextension.pyx:802:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>warning: tables/utilsextension.pyx:802:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
>* Using Python 2.7.12 (default, Sep 30 2016, 08:06:52) 
>* USE_PKGCONFIG: True
>* Found HDF5 headers at ``/usr/include``, library at ``/usr/lib``.
>* Found LZO 2 headers at ``/usr/include``, library at ``/usr/lib64``.
>.. WARNING:: Could not find the LZO 2 runtime.
>   The LZO 2 shared library was *not* found in the default library
>   paths. In case of runtime problems, please remember to install it.
>* Skipping detection of LZO 1 since LZO 2 has already been found.
>* Found bzip2 headers at ``/usr/include``, library at ``/usr/lib64``.
>.. WARNING:: Could not find the bzip2 runtime.
>   The bzip2 shared library was *not* found in the default library
>   paths. In case of runtime problems, please remember to install it.
>* Found blosc headers at ``/usr/include``, library at ``/usr/lib64``.
>.. WARNING:: This Blosc version does not support the BitShuffle filter. Minimum desirable version is 1.8.0.  Found version: 1.5.3
>Compiling tables/utilsextension.pyx because it changed.
>[1/1] Cythonizing tables/utilsextension.pyx
>Compiling tables/hdf5extension.pyx because it changed.
>[1/1] Cythonizing tables/hdf5extension.pyx
>Compiling tables/tableextension.pyx because it changed.
>[1/1] Cythonizing tables/tableextension.pyx
>Compiling tables/linkextension.pyx because it changed.
>[1/1] Cythonizing tables/linkextension.pyx
>Compiling tables/_comp_lzo.pyx because it changed.
>[1/1] Cythonizing tables/_comp_lzo.pyx
>Compiling tables/_comp_bzip2.pyx because it changed.
>[1/1] Cythonizing tables/_comp_bzip2.pyx
>Compiling tables/lrucacheextension.pyx because it changed.
>[1/1] Cythonizing tables/lrucacheextension.pyx
>Compiling tables/indexesextension.pyx because it changed.
>[1/1] Cythonizing tables/indexesextension.pyx
>running build
>running build_py
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/parameters.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/file.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/table.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/flavor.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/expression.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/array.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/registry.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/atom.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/path.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/leaf.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/vlarray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/conditions.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/exceptions.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/unimplemented.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/undoredo.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/filters.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/group.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/node.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/index.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/description.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/attributeset.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/link.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/earray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/carray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/idxutils.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/utils.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/indexes.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>copying tables/req_versions.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes
>copying tables/nodes/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes
>copying tables/nodes/filenode.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/misc
>copying tables/misc/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/misc
>copying tables/misc/proxydict.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/misc
>copying tables/misc/enum.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/misc
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>copying tables/scripts/pttree.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>copying tables/scripts/pt2to3.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>copying tables/scripts/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>copying tables/scripts/ptrepack.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>copying tables/scripts/ptdump.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/scripts
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_garbage.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_links.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_indexvalues.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_timetype.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_queries.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_tables.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/check_leaks.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_tablesMD.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_attributes.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/common.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_do_undo.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_tree.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_aux.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_basics.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_enum.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_lists.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_array.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_all.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_index_backcompat.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_vlarray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_indexes.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_expression.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_nestedtypes.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_hdf5compat.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/create_backcompat_indexes.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_earray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_create.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_carray.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_types.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_numpy.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>copying tables/nodes/tests/__init__.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>copying tables/nodes/tests/test_filenode.py -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>copying tables/tests/scalar.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/nested-type-with-gaps.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/elink.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/flavored_vlarrays-format1.6.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_i32be.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_enum.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_f64be.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/zerodim-attrs-1.4.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/python3.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/elink2.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/ex-noattr.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/oldflavor_numeric.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_unsupptype.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/slink.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_compound_chunked.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/bug-idx.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_i32le.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/indexes_2_1.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/times-nested-be.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/idx-std-1.x.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/issue_368.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/Tables_lzo2_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_i64le.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/vlunicode_endian.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_f64le.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/array_mdatom.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_SDSextendible.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/Tables_lzo1.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/python2.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/zerodim-attrs-1.3.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/vlstr_attr.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/attr-u16.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/non-chunked-table.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_szip.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/blosc_bigendian.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/smpl_i64be.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/indexes_2_0.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/Tables_lzo2.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/float.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/issue_560.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/Tables_lzo1_shuffle.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/time-table-vlarray-1_x.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/matlab_file.mat -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_ref_array1.mat -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/tests/test_ref_array2.mat -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/tests
>copying tables/nodes/tests/test_filenode.dat -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>copying tables/nodes/tests/test_filenode.xbm -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>copying tables/nodes/tests/test_filenode_v1.h5 -> /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/lib/tables/nodes/tests
>warning: build_py: byte-compiling is disabled, skipping.
>
>running build_ext
>building 'tables.utilsextension' extension
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/tables
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/src
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/hdf5-blosc
>creating /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src
>x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c tables/utilsextension.c -o /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/tables/utilsextension.o -march=core2 -O2 -pipe -fno-strict-aliasing -Isrc -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2
>In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
>                 from tables/utilsextension.c:284:
>/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it by " \
>  ^
>tables/utilsextension.c: In function â__pyx_pf_6tables_14utilsextension_16_dump_h5_backtraceâ:
>tables/utilsextension.c:4070:57: warning: passing argument 3 of âH5Ewalk2â from incompatible pointer type [-Wincompatible-pointer-types]
>   __pyx_t_2 = ((H5Ewalk(H5E_DEFAULT, H5E_WALK_DOWNWARD, __pyx_f_6tables_14utilsextension_e_walk_cb, ((void *)__pyx_v_bt)) < 0) != 0);
>                                                         ^
>In file included from /usr/include/hdf5.h:28:0,
>                 from tables/utilsextension.c:286:
>/usr/include/H5Epublic.h:171:15: note: expected âH5E_walk2_t {aka int (*)(unsigned int,  const struct H5E_error2_t *, void *)}â but argument is of type âherr_t (*)(unsigned int,  H5E_error2_t *, void *) {aka int (*)(unsigned int,  struct H5E_error2_t *, void *)}â
> H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func,
>               ^
>x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/utils.c -o /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/src/utils.o -march=core2 -O2 -pipe -fno-strict-aliasing -Isrc -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2
>In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
>                 from src/utils.h:2,
>                 from src/utils.c:2:
>/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it by " \
>  ^
>x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ARRAY.c -o /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/src/H5ARRAY.o -march=core2 -O2 -pipe -fno-strict-aliasing -Isrc -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2
>In file included from /usr/include/python2.7/Python.h:8:0,
>                 from src/utils.h:1,
>                 from src/H5ARRAY.c:4:
>/usr/include/python2.7/pyconfig.h:1193:0: warning: "_POSIX_C_SOURCE" redefined
> #define _POSIX_C_SOURCE 200112L
> ^
>In file included from /usr/include/H5public.h:37:0,
>                 from /usr/include/hdf5.h:24,
>                 from src/H5ATTR.h:19,
>                 from src/H5ARRAY.c:1:
>/usr/include/features.h:225:0: note: this is the location of the previous definition
> # define _POSIX_C_SOURCE 200809L
> ^
>In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
>                 from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
>                 from src/utils.h:2,
>                 from src/H5ARRAY.c:4:
>/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
> #warning "Using deprecated NumPy API, disable it by " \
>  ^
>x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c src/H5ATTR.c -o /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/src/H5ATTR.o -march=core2 -O2 -pipe -fno-strict-aliasing -Isrc -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2
>x86_64-pc-linux-gnu-gcc -march=core2 -O2 -pipe -fno-strict-aliasing -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c hdf5-blosc/src/blosc_filter.c -o /var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0-python2_7/temp.linux-x86_64-2.7/hdf5-blosc/src/blosc_filter.o -march=core2 -O2 -pipe -fno-strict-aliasing -Isrc -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2
>hdf5-blosc/src/blosc_filter.c: In function âblosc_filterâ:
>hdf5-blosc/src/blosc_filter.c:172:19: error: âBLOSC_BITSHUFFLEâ undeclared (first use in this function)
>  if (doshuffle == BLOSC_BITSHUFFLE) {
>                   ^
>hdf5-blosc/src/blosc_filter.c:172:19: note: each undeclared identifier is reported only once for each function it appears in
>error: command 'x86_64-pc-linux-gnu-gcc' failed with exit status 1
> [31;01m*[0m ERROR: dev-python/pytables-3.3.0::jfkw failed (compile phase):
> [31;01m*[0m   (no error message)
> [31;01m*[0m 
> [31;01m*[0m Call stack:
> [31;01m*[0m     ebuild.sh, line  115:  Called src_compile
> [31;01m*[0m   environment, line 3684:  Called distutils-r1_src_compile
> [31;01m*[0m   environment, line  938:  Called _distutils-r1_run_foreach_impl 'python_compile'
> [31;01m*[0m   environment, line  340:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile'
> [31;01m*[0m   environment, line 3197:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
> [31;01m*[0m   environment, line 2301:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
> [31;01m*[0m   environment, line 2299:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile'
> [31;01m*[0m   environment, line  607:  Called distutils-r1_run_phase 'python_compile'
> [31;01m*[0m   environment, line  931:  Called python_compile
> [31;01m*[0m   environment, line 2785:  Called distutils-r1_python_compile
> [31;01m*[0m   environment, line  806:  Called esetup.py 'build'
> [31;01m*[0m   environment, line 1437:  Called die
> [31;01m*[0m The specific snippet of code:
> [31;01m*[0m       "${@}" || die "${die_args[@]}";
> [31;01m*[0m 
> [31;01m*[0m If you need support, post the output of `emerge --info '=dev-python/pytables-3.3.0::jfkw'`,
> [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-python/pytables-3.3.0::jfkw'`.
> [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-python/pytables-3.3.0/temp/build.log'.
> [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-python/pytables-3.3.0/temp/environment'.
> [31;01m*[0m Working directory: '/var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0'
> [31;01m*[0m S: '/var/tmp/portage/dev-python/pytables-3.3.0/work/tables-3.3.0'

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Attachments on bug 597142: 450232 | 450234 | 450236