This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Goby configure 2.0.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/goby-cpp-2.0.1 --enable-shared --disable-static ## --------- ## ## Platform. ## ## --------- ## hostname = mr-fox uname -m = x86_64 uname -r = 4.7.7-hardened uname -s = Linux uname -v = #1 SMP Tue Oct 11 19:45:21 CEST 2016 /usr/bin/uname -p = Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib/portage/python3.4/ebuild-helpers/xattr PATH: /usr/lib/portage/python3.4/ebuild-helpers PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /opt/bin PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 PATH: /opt/vmware/bin PATH: /usr/bin/cdsclient ## ----------- ## ## Core tests. ## ## ----------- ## configure:2765: checking build system type configure:2779: result: x86_64-pc-linux-gnu configure:2799: checking host system type configure:2812: result: x86_64-pc-linux-gnu configure:2832: checking target system type configure:2845: result: x86_64-pc-linux-gnu configure:2887: checking for a BSD-compatible install configure:2955: result: /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c configure:2966: checking whether build environment is sane configure:3021: result: yes configure:3172: checking for a thread-safe mkdir -p configure:3211: result: /bin/mkdir -p configure:3218: checking for gawk configure:3234: found /usr/bin/gawk configure:3245: result: gawk configure:3256: checking whether make sets $(MAKE) configure:3278: result: yes configure:3307: checking whether make supports nested variables configure:3324: result: yes configure:3475: checking for x86_64-pc-linux-gnu-g++ configure:3491: found /usr/bin/x86_64-pc-linux-gnu-g++ configure:3502: result: x86_64-pc-linux-gnu-g++ configure:3573: checking for C++ compiler version configure:3582: x86_64-pc-linux-gnu-g++ --version >&5 x86_64-pc-linux-gnu-g++ (Gentoo 6.2.0-r1 p1.1) 6.2.0 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3593: $? = 0 configure:3582: x86_64-pc-linux-gnu-g++ -v >&5 Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp Thread model: posix gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) configure:3593: $? = 0 configure:3582: x86_64-pc-linux-gnu-g++ -V >&5 x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V' x86_64-pc-linux-gnu-g++: fatal error: no input files compilation terminated. configure:3593: $? = 1 configure:3582: x86_64-pc-linux-gnu-g++ -qversion >&5 x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-qversion'; did you mean '--version'? x86_64-pc-linux-gnu-g++: fatal error: no input files compilation terminated. configure:3593: $? = 1 configure:3613: checking whether the C++ compiler works configure:3635: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:3639: $? = 0 configure:3687: result: yes configure:3690: checking for C++ compiler default output file name configure:3692: result: a.out configure:3698: checking for suffix of executables configure:3705: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:3709: $? = 0 configure:3731: result: configure:3753: checking whether we are cross compiling configure:3761: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:3765: $? = 0 configure:3772: ./conftest configure:3776: $? = 0 configure:3791: result: no configure:3796: checking for suffix of object files configure:3818: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:3822: $? = 0 configure:3843: result: o configure:3847: checking whether we are using the GNU C++ compiler configure:3866: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:3866: $? = 0 configure:3875: result: yes configure:3884: checking whether x86_64-pc-linux-gnu-g++ accepts -g configure:3904: x86_64-pc-linux-gnu-g++ -c -g conftest.cpp >&5 configure:3904: $? = 0 configure:3945: result: yes configure:3979: checking for style of include used by make configure:4007: result: GNU configure:4033: checking dependency style of x86_64-pc-linux-gnu-g++ configure:4144: result: none configure:4167: checking for x86_64-pc-linux-gnu-gcc configure:4183: found /usr/bin/x86_64-pc-linux-gnu-gcc configure:4194: result: x86_64-pc-linux-gnu-gcc configure:4463: checking for C compiler version configure:4472: x86_64-pc-linux-gnu-gcc --version >&5 x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4483: $? = 0 configure:4472: x86_64-pc-linux-gnu-gcc -v >&5 Using built-in specs. COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper Target: x86_64-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp Thread model: posix gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) configure:4483: $? = 0 configure:4472: x86_64-pc-linux-gnu-gcc -V >&5 x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V' x86_64-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4483: $? = 1 configure:4472: x86_64-pc-linux-gnu-gcc -qversion >&5 x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? x86_64-pc-linux-gnu-gcc: fatal error: no input files compilation terminated. configure:4483: $? = 1 configure:4487: checking whether we are using the GNU C compiler configure:4506: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:4506: $? = 0 configure:4515: result: yes configure:4524: checking whether x86_64-pc-linux-gnu-gcc accepts -g configure:4544: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 configure:4544: $? = 0 configure:4585: result: yes configure:4602: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 configure:4665: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:4665: $? = 0 configure:4678: result: none needed configure:4703: checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together configure:4725: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4728: $? = 0 configure:4725: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o configure:4728: $? = 0 configure:4740: result: yes configure:4759: checking dependency style of x86_64-pc-linux-gnu-gcc configure:4870: result: none configure:4932: checking how to print strings configure:4959: result: printf configure:4980: checking for a sed that does not truncate output configure:5044: result: /bin/sed configure:5062: checking for grep that handles long lines and -e configure:5120: result: /bin/grep configure:5125: checking for egrep configure:5187: result: /bin/grep -E configure:5192: checking for fgrep configure:5254: result: /bin/grep -F configure:5289: checking for ld used by x86_64-pc-linux-gnu-gcc configure:5356: result: /usr/x86_64-pc-linux-gnu/bin/ld configure:5363: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld configure:5378: result: yes configure:5390: checking for BSD- or MS-compatible name lister (nm) configure:5444: result: /usr/bin/x86_64-pc-linux-gnu-nm -B configure:5574: checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface configure:5581: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:5584: /usr/bin/x86_64-pc-linux-gnu-nm -B "conftest.o" configure:5587: output 0000000000000000 B some_variable configure:5594: result: BSD nm configure:5597: checking whether ln -s works configure:5601: result: yes configure:5609: checking the maximum length of command line arguments configure:5740: result: 1572864 configure:5788: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:5828: result: func_convert_file_noop configure:5835: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:5855: result: func_convert_file_noop configure:5862: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files configure:5869: result: -r configure:5903: checking for x86_64-pc-linux-gnu-objdump configure:5919: found /usr/bin/x86_64-pc-linux-gnu-objdump configure:5930: result: x86_64-pc-linux-gnu-objdump configure:6002: checking how to recognize dependent libraries configure:6202: result: pass_all configure:6247: checking for x86_64-pc-linux-gnu-dlltool configure:6277: result: no configure:6287: checking for dlltool configure:6317: result: no configure:6347: checking how to associate runtime and link libraries configure:6374: result: printf %s\n configure:6391: checking for x86_64-pc-linux-gnu-ar configure:6407: found /usr/bin/x86_64-pc-linux-gnu-ar configure:6418: result: x86_64-pc-linux-gnu-ar configure:6499: checking for archiver @FILE support configure:6516: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:6516: $? = 0 configure:6519: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 configure:6522: $? = 0 configure:6527: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory configure:6530: $? = 1 configure:6542: result: @ configure:6560: checking for x86_64-pc-linux-gnu-strip configure:6576: found /usr/bin/x86_64-pc-linux-gnu-strip configure:6587: result: x86_64-pc-linux-gnu-strip configure:6659: checking for x86_64-pc-linux-gnu-ranlib configure:6675: found /usr/bin/x86_64-pc-linux-gnu-ranlib configure:6686: result: x86_64-pc-linux-gnu-ranlib configure:6828: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object configure:6981: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:6984: $? = 0 configure:6988: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6991: $? = 0 configure:7057: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp conftstm.o >&5 configure:7060: $? = 0 configure:7098: result: ok configure:7145: checking for sysroot configure:7175: result: no configure:7182: checking for a working dd configure:7220: result: /bin/dd configure:7224: checking how to truncate binary pipes configure:7239: result: /bin/dd bs=4096 count=1 configure:7376: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:7379: $? = 0 configure:7529: checking for x86_64-pc-linux-gnu-mt configure:7559: result: no configure:7569: checking for mt configure:7585: found /usr/sbin/mt configure:7596: result: mt configure:7619: checking if mt is a manifest tool configure:7625: mt '-?' usage: mt [-v] [--version] [-h] [ -f device ] command [ count ] configure:7633: result: no configure:8310: checking how to run the C preprocessor configure:8341: x86_64-pc-linux-gnu-gcc -E conftest.c configure:8341: $? = 0 configure:8355: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8355: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | /* end confdefs.h. */ | #include configure:8380: result: x86_64-pc-linux-gnu-gcc -E configure:8400: x86_64-pc-linux-gnu-gcc -E conftest.c configure:8400: $? = 0 configure:8414: x86_64-pc-linux-gnu-gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8414: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | /* end confdefs.h. */ | #include configure:8443: checking for ANSI C header files configure:8463: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8463: $? = 0 configure:8536: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 configure:8536: $? = 0 configure:8536: ./conftest configure:8536: $? = 0 configure:8547: result: yes configure:8560: checking for sys/types.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for sys/stat.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for stdlib.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for string.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for memory.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for strings.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for inttypes.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for stdint.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8560: checking for unistd.h configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8560: $? = 0 configure:8560: result: yes configure:8574: checking for dlfcn.h configure:8574: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:8574: $? = 0 configure:8574: result: yes configure:8840: checking for objdir configure:8855: result: .libs configure:9119: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions configure:9137: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:9141: $? = 0 configure:9154: result: no configure:9512: checking for x86_64-pc-linux-gnu-gcc option to produce PIC configure:9519: result: -fPIC -DPIC configure:9527: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works configure:9545: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.c >&5 configure:9549: $? = 0 configure:9562: result: yes configure:9591: checking if x86_64-pc-linux-gnu-gcc static flag -static works configure:9619: result: yes configure:9634: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o configure:9655: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -o out/conftest2.o conftest.c >&5 configure:9659: $? = 0 configure:9681: result: yes configure:9689: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o configure:9736: result: yes configure:9769: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:11028: result: yes configure:11065: checking whether -lc should be explicitly linked in configure:11073: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 configure:11076: $? = 0 configure:11091: x86_64-pc-linux-gnu-gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:11094: $? = 0 configure:11108: result: no configure:11268: checking dynamic linker characteristics configure:11862: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11862: $? = 0 configure:12099: result: GNU/Linux ld.so configure:12221: checking how to hardcode library paths into programs configure:12246: result: immediate configure:12794: checking whether stripping libraries is possible configure:12799: result: yes configure:12834: checking if libtool supports shared libraries configure:12836: result: yes configure:12839: checking whether to build shared libraries configure:12864: result: yes configure:12867: checking whether to build static libraries configure:12871: result: no configure:12894: checking how to run the C++ preprocessor configure:12921: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:12921: $? = 0 configure:12935: x86_64-pc-linux-gnu-g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:12935: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12960: result: x86_64-pc-linux-gnu-g++ -E configure:12980: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:12980: $? = 0 configure:12994: x86_64-pc-linux-gnu-g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:12994: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13156: checking for ld used by x86_64-pc-linux-gnu-g++ configure:13223: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 configure:13230: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld configure:13245: result: yes configure:13300: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:14373: result: yes configure:14409: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:14412: $? = 0 configure:14893: checking for x86_64-pc-linux-gnu-g++ option to produce PIC configure:14900: result: -fPIC -DPIC configure:14908: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works configure:14926: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14930: $? = 0 configure:14943: result: yes configure:14966: checking if x86_64-pc-linux-gnu-g++ static flag -static works configure:14994: result: yes configure:15006: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o configure:15027: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -o out/conftest2.o conftest.cpp >&5 configure:15031: $? = 0 configure:15053: result: yes configure:15058: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o configure:15105: result: yes configure:15135: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries configure:15175: result: yes configure:15316: checking dynamic linker characteristics configure:16074: result: GNU/Linux ld.so configure:16139: checking how to hardcode library paths into programs configure:16164: result: immediate configure:16227: checking for stdbool.h that conforms to C99 configure:16294: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp:26:15: error: expected unqualified-id before string constant "error: bool is not defined" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ conftest.cpp:44:48: error: 's' does not name a type struct s { _Bool s: 1; _Bool t; } s; ^ conftest.cpp:54:28: error: 's' was not declared in this scope char i[sizeof s.t]; ^ conftest.cpp: In function 'int main()': conftest.cpp:72:24: error: 's' was not declared in this scope bool e = &s; ^ conftest.cpp:76:63: error: 'i' was not declared in this scope return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l ^ configure:16294: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | #include | #ifndef bool | "error: bool is not defined" | #endif | #ifndef false | "error: false is not defined" | #endif | #if false | "error: false is not 0" | #endif | #ifndef true | "error: true is not defined" | #endif | #if true != 1 | "error: true is not 1" | #endif | #ifndef __bool_true_false_are_defined | "error: __bool_true_false_are_defined is not defined" | #endif | | struct s { _Bool s: 1; _Bool t; } s; | | char a[true == 1 ? 1 : -1]; | char b[false == 0 ? 1 : -1]; | char c[__bool_true_false_are_defined == 1 ? 1 : -1]; | char d[(bool) 0.5 == true ? 1 : -1]; | /* See body of main program for 'e'. */ | char f[(_Bool) 0.0 == false ? 1 : -1]; | char g[true]; | char h[sizeof (_Bool)]; | char i[sizeof s.t]; | enum { j = false, k = true, l = false * true, m = true * 256 }; | /* The following fails for | HP aC++/ANSI C B3910B A.05.55 [Dec 04 2003]. */ | _Bool n[m]; | char o[sizeof n == m * sizeof n[0] ? 1 : -1]; | char p[-1 - (_Bool) 0 < 0 && -1 - (bool) 0 < 0 ? 1 : -1]; | /* Catch a bug in an HP-UX C compiler. See | http://gcc.gnu.org/ml/gcc-patches/2003-12/msg02303.html | http://lists.gnu.org/archive/html/bug-coreutils/2005-11/msg00161.html | */ | _Bool q = true; | _Bool *pq = &q; | | int | main () | { | | bool e = &s; | *pq |= q; | *pq |= ! q; | /* Refer to every declared value, to avoid compiler optimizations. */ | return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | + !m + !n + !o + !p + !q + !pq); | | ; | return 0; | } configure:16301: result: no configure:16303: checking for _Bool configure:16303: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:59:13: error: '_Bool' was not declared in this scope if (sizeof (_Bool)) ^~~~~ configure:16303: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof (_Bool)) | return 0; | ; | return 0; | } configure:16303: result: no configure:16321: checking for ANSI C header files configure:16425: result: yes configure:16433: checking for an ANSI C-conforming const configure:16499: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16499: $? = 0 configure:16506: result: yes configure:16514: checking for inline configure:16530: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16530: $? = 0 configure:16538: result: inline configure:16556: checking for off_t configure:16556: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16556: $? = 0 configure:16556: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:60:19: error: expected primary-expression before ')' token if (sizeof ((off_t))) ^ configure:16556: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:16556: result: yes configure:16567: checking for size_t configure:16567: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16567: $? = 0 configure:16567: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:60:20: error: expected primary-expression before ')' token if (sizeof ((size_t))) ^ configure:16567: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Goby" | #define PACKAGE_TARNAME "goby" | #define PACKAGE_VERSION "2.0.1" | #define PACKAGE_STRING "Goby 2.0.1" | #define PACKAGE_BUGREPORT "icb@med.cornell.edu" | #define PACKAGE_URL "" | #define PACKAGE "goby" | #define VERSION "2.0.1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:16567: result: yes configure:16582: checking size of unsigned long configure:16587: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16587: $? = 0 configure:16587: ./conftest configure:16587: $? = 0 configure:16601: result: 8 configure:16615: checking size of unsigned long long configure:16620: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16620: $? = 0 configure:16620: ./conftest configure:16620: $? = 0 configure:16634: result: 8 configure:16647: checking fcntl.h usability configure:16647: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16647: $? = 0 configure:16647: result: yes configure:16647: checking fcntl.h presence configure:16647: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:16647: $? = 0 configure:16647: result: yes configure:16647: checking for fcntl.h configure:16647: result: yes configure:16659: checking malloc.h usability configure:16659: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 configure:16659: $? = 0 configure:16659: result: yes configure:16659: checking malloc.h presence configure:16659: x86_64-pc-linux-gnu-g++ -E conftest.cpp configure:16659: $? = 0 configure:16659: result: yes configure:16659: checking for malloc.h configure:16659: result: yes configure:16673: checking for getcwd configure:16673: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16673: $? = 0 configure:16673: result: yes configure:16684: checking for memset configure:16684: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16684: $? = 0 configure:16684: result: yes configure:16695: checking for putenv configure:16695: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16695: $? = 0 configure:16695: result: yes configure:16706: checking for realpath configure:16706: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16706: $? = 0 configure:16706: result: yes configure:16717: checking for setenv configure:16717: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16717: $? = 0 configure:16717: result: yes configure:16728: checking for strerror configure:16728: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16728: $? = 0 configure:16728: result: yes configure:16740: checking for stdlib.h configure:16740: result: yes configure:16750: checking for GNU libc compatible malloc configure:16774: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16774: $? = 0 configure:16774: ./conftest configure:16774: $? = 0 configure:16784: result: yes configure:16807: checking for stdlib.h configure:16807: result: yes configure:16817: checking for GNU libc compatible realloc configure:16841: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16841: $? = 0 configure:16841: ./conftest configure:16841: $? = 0 configure:16851: result: yes configure:16872: checking whether lstat correctly handles trailing slash configure:16898: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16898: $? = 0 configure:16898: ./conftest configure:16898: $? = 0 configure:16915: result: yes configure:16934: checking whether stat accepts an empty string configure:16954: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 configure:16954: $? = 0 configure:16954: ./conftest configure:16954: $? = 0 configure:16964: result: no configure:16981: checking whether lstat correctly handles trailing slash configure:17024: result: yes configure:17068: checking for x86_64-pc-linux-gnu-pkg-config configure:17086: found /usr/bin/x86_64-pc-linux-gnu-pkg-config configure:17098: result: /usr/bin/x86_64-pc-linux-gnu-pkg-config configure:17166: checking pkg-config is at least version 0.9.0 configure:17169: result: yes configure:17179: checking for PROTOBUF configure:17186: $PKG_CONFIG --exists --print-errors "protobuf >= 2.4.1" configure:17189: $? = 0 configure:17203: $PKG_CONFIG --exists --print-errors "protobuf >= 2.4.1" configure:17206: $? = 0 configure:17264: result: yes configure:17272: checking for LIBPCRECPP configure:17279: $PKG_CONFIG --exists --print-errors "libpcrecpp >= 8.10" configure:17282: $? = 0 configure:17296: $PKG_CONFIG --exists --print-errors "libpcrecpp >= 8.10" configure:17299: $? = 0 configure:17357: result: yes configure:17473: checking that generated files are newer than configure configure:17479: result: done configure:17506: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by Goby config.status 2.0.1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on mr-fox config.status:1177: creating Makefile config.status:1177: creating src/Makefile config.status:1177: creating goby.pc config.status:1177: creating config.h config.status:1391: executing depfiles commands config.status:1391: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' ac_cv_env_LIBPCRECPP_CFLAGS_set= ac_cv_env_LIBPCRECPP_CFLAGS_value= ac_cv_env_LIBPCRECPP_LIBS_set= ac_cv_env_LIBPCRECPP_LIBS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set=set ac_cv_env_PKG_CONFIG_PATH_value=/usr/lib64/pkgconfig ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_PROTOBUF_CFLAGS_set= ac_cv_env_PROTOBUF_CFLAGS_value= ac_cv_env_PROTOBUF_LIBS_set= ac_cv_env_PROTOBUF_LIBS_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-pc-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-pc-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_getcwd=yes ac_cv_func_lstat_dereferences_slashed_symlink=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_memset=yes ac_cv_func_putenv=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_realpath=yes ac_cv_func_setenv=yes ac_cv_func_stat_empty_string_bug=no ac_cv_func_strerror=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdbool_h=no ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_PKG_CONFIG=/usr/bin/x86_64-pc-linux-gnu-pkg-config ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=x86_64-pc-linux-gnu-ar ac_cv_prog_AWK=gawk ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++ ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E' ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip ac_cv_prog_ac_ct_MANIFEST_TOOL=mt ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_sizeof_unsigned_long=8 ac_cv_sizeof_unsigned_long_long=8 ac_cv_target=x86_64-pc-linux-gnu ac_cv_type__Bool=no ac_cv_type_off_t=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' pkg_cv_LIBPCRECPP_CFLAGS= pkg_cv_LIBPCRECPP_LIBS=-lpcrecpp pkg_cv_PROTOBUF_CFLAGS=-pthread pkg_cv_PROTOBUF_LIBS='-lprotobuf -pthread -lpthread' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing aclocal-1.15' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='x86_64-pc-linux-gnu-ar' AUTOCONF='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing autoconf' AUTOHEADER='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing autoheader' AUTOMAKE='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing automake-1.15' AWK='gawk' CC='x86_64-pc-linux-gnu-gcc' CCDEPMODE='depmode=none' CFLAGS='-march=native -O2 -pipe' CPP='x86_64-pc-linux-gnu-gcc -E' CPPFLAGS='' CXX='x86_64-pc-linux-gnu-g++' CXXCPP='x86_64-pc-linux-gnu-g++ -E' CXXDEPMODE='depmode=none' CXXFLAGS='-march=native -O2 -pipe' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' FGREP='/bin/grep -F' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' LDFLAGS='-Wl,-O1 -Wl,--as-needed' LIBOBJS='' LIBPCRECPP_CFLAGS='' LIBPCRECPP_LIBS='-lpcrecpp' LIBS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAKEINFO='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NM='/usr/bin/x86_64-pc-linux-gnu-nm -B' NMEDIT='' OBJDUMP='x86_64-pc-linux-gnu-objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='goby' PACKAGE_BUGREPORT='icb@med.cornell.edu' PACKAGE_NAME='Goby' PACKAGE_STRING='Goby 2.0.1' PACKAGE_TARNAME='goby' PACKAGE_URL='' PACKAGE_VERSION='2.0.1' PATH_SEPARATOR=':' PKG_CONFIG='/usr/bin/x86_64-pc-linux-gnu-pkg-config' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='/usr/lib64/pkgconfig' PROTOBUF_CFLAGS='-pthread' PROTOBUF_LIBS='-lprotobuf -pthread -lpthread' RANLIB='x86_64-pc-linux-gnu-ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='x86_64-pc-linux-gnu-strip' VERSION='2.0.1' ac_ct_AR='' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-pc-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='/usr/share' datarootdir='${prefix}/share' docdir='/usr/share/doc/goby-cpp-2.0.1' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='x86_64-pc-linux-gnu' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='/usr/share/info' install_sh='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/install-sh' libdir='/usr/lib64' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var/lib' mandir='/usr/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target='x86_64-pc-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='pc' version_info='1:0:0' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "Goby" #define PACKAGE_TARNAME "goby" #define PACKAGE_VERSION "2.0.1" #define PACKAGE_STRING "Goby 2.0.1" #define PACKAGE_BUGREPORT "icb@med.cornell.edu" #define PACKAGE_URL "" #define PACKAGE "goby" #define VERSION "2.0.1" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define STDC_HEADERS 1 #define SIZEOF_UNSIGNED_LONG 8 #define SIZEOF_UNSIGNED_LONG_LONG 8 #define HAVE_FCNTL_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GETCWD 1 #define HAVE_MEMSET 1 #define HAVE_PUTENV 1 #define HAVE_REALPATH 1 #define HAVE_SETENV 1 #define HAVE_STRERROR 1 #define HAVE_STDLIB_H 1 #define HAVE_MALLOC 1 #define HAVE_STDLIB_H 1 #define HAVE_REALLOC 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 configure: exit 0