sci-chemistry:sparky-3.115-r1:20161003-045724.log

sci-chemistry:sparky-3.115-r1:20161003-045724.log (text/plain), 7.09 KB, created by Toralf Förster on 2016-10-03 08:18:44 UTC

 * Package:    sci-chemistry/sparky-3.115-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking sparky-source-3.115.tar.gz to /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ...
 * Applying 3.115-ldflags.patch ...
 [ ok ]
 * Applying 3.115-wrapper-r1.patch ...
 [ ok ]
 * Applying 3.115-paths.patch ...
 [ ok ]
 * Applying 3.115-makefile.patch ...
 [ ok ]
 * Adjusting to prefix /
 *   sparky ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ...
make -j1 SPARKY=/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky PYTHON_VERSION=2.7 PYTHON_PREFIX=/usr PYTHON_LIB=/usr/lib64 PYTHON_INC=/usr/include/python2.7 TK_PREFIX=/usr TCLTK_VERSION=8.6 'TKLIBS=-L/usr/lib64/ -ltk -ltcl -lX11' CXX=x86_64-pc-linux-gnu-g++ CC=x86_64-pc-linux-gnu-gcc LDSHARED=-shared binaries 
cd /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++ && make -f /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++/Makefile -e sparky-no-python ucsfdata pipe2ucsf vnmr2ucsf bruk2ucsf peaks2ucsf matrix2ucsf debug-sparky
make[1]: Entering directory '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++'
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c main.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c assignguess.cc
assignguess.cc: In function ‘void append_unique(int, List&)’:
assignguess.cc:428:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
   { if (!list.contains((void *) i)) list.append((void *) i); }
                                 ^
assignguess.cc:428:58: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
   { if (!list.contains((void *) i)) list.append((void *) i); }
                                                          ^
assignguess.cc: In function ‘bool acceptable_index(const Guess_Assignments&, Resonance*, int, const List&)’:
assignguess.cc:465:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     accept = ilist.contains((void *) gnum);
                                      ^~~~
assignguess.cc:467:45: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     accept = ilist.contains((void *) (gnum+1));
                                             ^
assignguess.cc:469:39: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     accept = (ilist.contains((void *) gnum) ||
                                       ^~~~
assignguess.cc:470:39: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
        ilist.contains((void *) (gnum+1)));
                                       ^
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c assigncopy.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c attacheddata.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c atom.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c axismap.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c binaryIO.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c blockfile.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c brukerfile.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c color.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c command.cc
command.cc: In function ‘void add_standard_menu_accelerators(Command_Dispatcher&)’:
command.cc:287:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
     NULL);
         ^
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c condition.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contour.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contourplane.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contourstream.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c crosspeak.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c dataregion.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c felixfile.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c format.cc
format.cc: In function ‘Line* restore_line_v1(FILE*, Spectrum*)’:
format.cc:1064:28: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
     atoi(next_token(&rest));  // not used
                            ^
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c grid.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c group.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c integrate.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c label.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c line.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c linefit.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c lusolve.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c list.cc
x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c memalloc.cc
memalloc.cc: In function ‘void* operator new(size_t)’:
memalloc.cc:42:7: error: declaration of ‘void* operator new(size_t) throw (std::bad_alloc)’ has a different exception specifier
 void *operator new(size_t size) throw(std::bad_alloc)
       ^~~~~~~~
In file included from memalloc.cc:10:0:
memalloc.h:23:7: note: from previous declaration ‘void* operator new(std::size_t)’
 void *operator new(size_t size) throw(std::bad_alloc);
       ^~~~~~~~
memalloc.cc: In function ‘void* operator new [](size_t)’:
memalloc.cc:75:7: error: declaration of ‘void* operator new [](size_t) throw (std::bad_alloc)’ has a different exception specifier
 void *operator new[](size_t size) throw(std::bad_alloc)
       ^~~~~~~~
In file included from memalloc.cc:10:0:
memalloc.h:26:7: note: from previous declaration ‘void* operator new [](std::size_t)’
 void *operator new[](size_t size) throw(std::bad_alloc);
       ^~~~~~~~
make[1]: *** [/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++/Makefile:106: memalloc.o] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++'
make: *** [Makefile:55: binaries] Error 2
 * ERROR: sci-chemistry/sparky-3.115-r1::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-chemistry/sparky-3.115-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-chemistry/sparky-3.115-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-chemistry:sparky-3.115-r1:20161003-045724.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky'
 * S: '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky'