* Package: sci-chemistry/sparky-3.115-r1 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking sparky-source-3.115.tar.gz to /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work >>> Preparing source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ... * Applying 3.115-ldflags.patch ... [ ok ] * Applying 3.115-wrapper-r1.patch ... [ ok ] * Applying 3.115-paths.patch ... [ ok ] * Applying 3.115-makefile.patch ... [ ok ] * Adjusting to prefix / * sparky ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky ... make -j1 SPARKY=/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky PYTHON_VERSION=2.7 PYTHON_PREFIX=/usr PYTHON_LIB=/usr/lib64 PYTHON_INC=/usr/include/python2.7 TK_PREFIX=/usr TCLTK_VERSION=8.6 'TKLIBS=-L/usr/lib64/ -ltk -ltcl -lX11' CXX=x86_64-pc-linux-gnu-g++ CC=x86_64-pc-linux-gnu-gcc LDSHARED=-shared binaries cd /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++ && make -f /var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++/Makefile -e sparky-no-python ucsfdata pipe2ucsf vnmr2ucsf bruk2ucsf peaks2ucsf matrix2ucsf debug-sparky make[1]: Entering directory '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++' x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c main.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c assignguess.cc assignguess.cc: In function ‘void append_unique(int, List&)’: assignguess.cc:428:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] { if (!list.contains((void *) i)) list.append((void *) i); } ^ assignguess.cc:428:58: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] { if (!list.contains((void *) i)) list.append((void *) i); } ^ assignguess.cc: In function ‘bool acceptable_index(const Guess_Assignments&, Resonance*, int, const List&)’: assignguess.cc:465:38: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] accept = ilist.contains((void *) gnum); ^~~~ assignguess.cc:467:45: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] accept = ilist.contains((void *) (gnum+1)); ^ assignguess.cc:469:39: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] accept = (ilist.contains((void *) gnum) || ^~~~ assignguess.cc:470:39: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] ilist.contains((void *) (gnum+1))); ^ x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c assigncopy.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c attacheddata.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c atom.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c axismap.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c binaryIO.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c blockfile.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c brukerfile.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c color.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c command.cc command.cc: In function ‘void add_standard_menu_accelerators(Command_Dispatcher&)’: command.cc:287:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] NULL); ^ x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c condition.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contour.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contourplane.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c contourstream.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c crosspeak.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c dataregion.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c felixfile.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c format.cc format.cc: In function ‘Line* restore_line_v1(FILE*, Spectrum*)’: format.cc:1064:28: warning: ignoring return value of ‘int atoi(const char*)’, declared with attribute warn_unused_result [-Wunused-result] atoi(next_token(&rest)); // not used ^ x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c grid.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c group.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c integrate.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c label.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c line.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c linefit.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c lusolve.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c list.cc x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c memalloc.cc memalloc.cc: In function ‘void* operator new(size_t)’: memalloc.cc:42:7: error: declaration of ‘void* operator new(size_t) throw (std::bad_alloc)’ has a different exception specifier void *operator new(size_t size) throw(std::bad_alloc) ^~~~~~~~ In file included from memalloc.cc:10:0: memalloc.h:23:7: note: from previous declaration ‘void* operator new(std::size_t)’ void *operator new(size_t size) throw(std::bad_alloc); ^~~~~~~~ memalloc.cc: In function ‘void* operator new [](size_t)’: memalloc.cc:75:7: error: declaration of ‘void* operator new [](size_t) throw (std::bad_alloc)’ has a different exception specifier void *operator new[](size_t size) throw(std::bad_alloc) ^~~~~~~~ In file included from memalloc.cc:10:0: memalloc.h:26:7: note: from previous declaration ‘void* operator new [](std::size_t)’ void *operator new[](size_t size) throw(std::bad_alloc); ^~~~~~~~ make[1]: *** [/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++/Makefile:106: memalloc.o] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky/c++' make: *** [Makefile:55: binaries] Error 2 * ERROR: sci-chemistry/sparky-3.115-r1::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/sparky-3.115-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/sparky-3.115-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:sparky-3.115-r1:20161003-045724.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky' * S: '/var/tmp/portage/sci-chemistry/sparky-3.115-r1/work/sparky'