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Gentoo's Bugzilla – Attachment 447980 Details for
Bug 595156
sci-physics/espresso-3.3.1 : configure: error: failed to find required module numpy
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sci-physics:espresso-3.3.1:20160926-005651.log
sci-physics:espresso-3.3.1:20160926-005651.log (text/plain), 13.07 KB, created by
Toralf Förster
on 2016-09-26 07:45:22 UTC
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Description:
sci-physics:espresso-3.3.1:20160926-005651.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2016-09-26 07:45:22 UTC
Size:
13.07 KB
patch
obsolete
> * Package: sci-physics/espresso-3.3.1 > * Repository: gentoo > * Maintainer: ottxor@gentoo.org sci-physics@gentoo.org > * USE: X abi_x86_64 amd64 elibc_glibc fftw kernel_linux python python_targets_python2_7 userland_GNU > * FEATURES: preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking espresso-3.3.1.tar.gz to /var/tmp/portage/sci-physics/espresso-3.3.1/work >>>> Source unpacked in /var/tmp/portage/sci-physics/espresso-3.3.1/work >>>> Preparing source in /var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1 ... > * econf: updating espresso-3.3.1/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating espresso-3.3.1/config/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/espresso-3.3.1 --htmldir=/usr/share/doc/espresso-3.3.1/html --libdir=/usr/lib64 --with-fftw --without-cuda --with-python-interface --without-mpi --without-tk --with-x >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >/var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1/config/missing: Unknown '--is-lightweight' option >Try '/var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1/config/missing --help' for more information >configure: WARNING: 'missing' script is too old or missing >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking whether UID '250' is supported by ustar format... yes >checking whether GID '250' is supported by ustar format... yes >checking how to create a ustar tar archive... gnutar >checking whether to enable maintainer-specific portions of Makefiles... no >checking whether make supports nested variables... (cached) yes >checking whether we are using development sources... no >**************************************************************** >* Checking compiler characteristics and MPI support * >**************************************************************** >checking for style of include used by make... GNU >checking whether to compile using MPI... no >checking whether the C++ compiler works... yes >checking for C++ compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >configure: WARNING: No MPI c++ compiler found, will use fake implementation! >checking whether x86_64-pc-linux-gnu-g++ understands -c and -o together... yes >**************************************************************** >* Checking for programs * >**************************************************************** >checking how to print strings... printf >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for gawk... (cached) gawk >checking for egrep... (cached) /bin/grep -E >checking whether ln -s works... yes >checking for doxygen... no >checking for dot... no >checking for pdflatex... /usr/bin/pdflatex >checking for makeindex... /usr/bin/makeindex >checking for bibtex... /usr/bin/bibtex >**************************************************************** >* Checking for standard headers * >**************************************************************** >checking for ANSI C header files... (cached) yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking for inttypes.h... (cached) yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking sys/file.h usability... yes >checking sys/file.h presence... yes >checking for sys/file.h... yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >**************************************************************** >* Checking for standard functions * >**************************************************************** >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for working memcmp... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking for sys/socket.h... (cached) yes >checking types of arguments for select... int,fd_set *,struct timeval * >checking for size_t... yes >checking for working strtod... yes >checking for atexit... yes >checking for floor... yes >checking for getcwd... yes >checking for gethostbyname... yes >checking for memset... yes >checking for pow... yes >checking for rint... yes >checking for select... yes >checking for socket... yes >checking for sqrt... yes >**************************************************************** >* Checking for required tools and libraries * >**************************************************************** >checking whether to use FFTW... yes >checking for libfftw3... yes >checking for fftw3.h... yes >checking whether to use CUDA... no >checking for nvcc... no >**************************************************************** >* Checking for Python * >**************************************************************** >checking whether /usr/bin/python2.7 version is >= 2.5... yes >checking for /usr/bin/python2.7 version... 2.7 >checking for /usr/bin/python2.7 platform... linux2 >checking for /usr/bin/python2.7 script directory... ${prefix}/lib64/python2.7/site-packages >checking for /usr/bin/python2.7 extension module directory... ${exec_prefix}/lib64/python2.7/site-packages >checking whether python -B works... yes >checking whether the python interface is wanted... yes >checking for python2.7... /usr/bin/python2.7 -B >checking for a version of Python >= '2.5'... yes >checking for python2.7-config... /usr/bin/python2.7-config >checking consistency of all components of python development environment... yes >checking for cython... /usr/bin/cython >./configure: line 19990: test: /usr/bin/python2.7: binary operator expected >checking python2.7 module: numpy... no >configure: error: failed to find required module numpy > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1/config.log > * ERROR: sci-physics/espresso-3.3.1::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 115: Called src_configure > * environment, line 2117: Called econf '--with-fftw' '--without-cuda' '--with-python-interface' '--without-mpi' '--without-tk' '--with-x' > * phase-helpers.sh, line 662: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 117: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-physics/espresso-3.3.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-physics/espresso-3.3.1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-physics:espresso-3.3.1:20160926-005651.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/espresso-3.3.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-physics/espresso-3.3.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1' > * S: '/var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1'
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