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Gentoo's Bugzilla – Attachment 447890 Details for
Bug 595124
sci-physics/espresso-3.3.1 : utils.hpp:150:16: error: 'std::pmalloc' has not been declared
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config.log
config.log (text/plain), 52.38 KB, created by
Toralf Förster
on 2016-09-25 20:14:42 UTC
(
hide
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Description:
config.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2016-09-25 20:14:42 UTC
Size:
52.38 KB
patch
obsolete
>This file contains any messages produced by compilers while >running configure, to aid debugging if configure makes a mistake. > >It was created by ESPResSo configure 3.3.1, which was >generated by GNU Autoconf 2.69. Invocation command line was > > $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/espresso-3.3.1 --htmldir=/usr/share/doc/espresso-3.3.1/html --libdir=/usr/lib64 --with-fftw --without-cuda --without-python-interface --without-mpi --without-tk --with-x > >## --------- ## >## Platform. ## >## --------- ## > >hostname = mr-fox >uname -m = x86_64 >uname -r = 4.7.4-hardened-r1 >uname -s = Linux >uname -v = #1 SMP Thu Sep 22 18:21:40 CEST 2016 > >/usr/bin/uname -p = Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz >/bin/uname -X = unknown > >/bin/arch = unknown >/usr/bin/arch -k = unknown >/usr/convex/getsysinfo = unknown >/usr/bin/hostinfo = unknown >/bin/machine = unknown >/usr/bin/oslevel = unknown >/bin/universe = unknown > >PATH: /usr/lib/portage/python3.4/ebuild-helpers/xattr >PATH: /usr/lib/portage/python3.4/ebuild-helpers >PATH: /usr/local/sbin >PATH: /usr/local/bin >PATH: /usr/sbin >PATH: /usr/bin >PATH: /sbin >PATH: /bin >PATH: /opt/bin >PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 > > >## ----------- ## >## Core tests. ## >## ----------- ## > >configure:2671: checking build system type >configure:2685: result: x86_64-pc-linux-gnu >configure:2705: checking host system type >configure:2718: result: x86_64-pc-linux-gnu >configure:2738: checking target system type >configure:2751: result: x86_64-pc-linux-gnu >configure:2796: checking for a BSD-compatible install >configure:2864: result: /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c >configure:2875: checking whether build environment is sane >configure:2930: result: yes >configure:2968: WARNING: 'missing' script is too old or missing >configure:3081: checking for a thread-safe mkdir -p >configure:3120: result: /bin/mkdir -p >configure:3127: checking for gawk >configure:3143: found /usr/bin/gawk >configure:3154: result: gawk >configure:3165: checking whether make sets $(MAKE) >configure:3187: result: yes >configure:3216: checking whether make supports nested variables >configure:3233: result: yes >configure:3322: checking whether UID '250' is supported by ustar format >configure:3325: result: yes >configure:3332: checking whether GID '250' is supported by ustar format >configure:3335: result: yes >configure:3343: checking how to create a ustar tar archive >configure:3354: tar --version >tar (GNU tar) 1.29 >Copyright (C) 2015 Free Software Foundation, Inc. >License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. >This is free software: you are free to change and redistribute it. >There is NO WARRANTY, to the extent permitted by law. > >Written by John Gilmore and Jay Fenlason. >configure:3357: $? = 0 >configure:3397: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar >configure:3400: $? = 0 >configure:3404: tar -xf - <conftest.tar >configure:3407: $? = 0 >configure:3409: cat conftest.dir/file >GrepMe >configure:3412: $? = 0 >configure:3425: result: gnutar >configure:3434: checking whether to enable maintainer-specific portions of Makefiles >configure:3443: result: no >configure:3469: checking whether make supports nested variables >configure:3486: result: yes >configure:3499: checking whether we are using development sources >configure:3514: result: no >configure:3557: checking for style of include used by make >configure:3585: result: GNU >configure:3611: checking whether to compile using MPI >configure:3618: result: no >configure:3839: checking for C++ compiler version >configure:3848: x86_64-pc-linux-gnu-g++ --version >&5 >x86_64-pc-linux-gnu-g++ (Gentoo 6.2.0-r1 p1.1) 6.2.0 >Copyright (C) 2016 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:3859: $? = 0 >configure:3848: x86_64-pc-linux-gnu-g++ -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-g++ >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,java,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --disable-default-ssp >Thread model: posix >gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) >configure:3859: $? = 0 >configure:3848: x86_64-pc-linux-gnu-g++ -V >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V' >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:3859: $? = 1 >configure:3848: x86_64-pc-linux-gnu-g++ -qversion >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-qversion'; did you mean '--version'? >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:3859: $? = 1 >configure:3879: checking whether the C++ compiler works >configure:3901: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3905: $? = 0 >configure:3953: result: yes >configure:3956: checking for C++ compiler default output file name >configure:3958: result: a.out >configure:3964: checking for suffix of executables >configure:3971: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3975: $? = 0 >configure:3997: result: >configure:4019: checking whether we are cross compiling >configure:4027: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:4031: $? = 0 >configure:4038: ./conftest >configure:4042: $? = 0 >configure:4057: result: no >configure:4062: checking for suffix of object files >configure:4084: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:4088: $? = 0 >configure:4109: result: o >configure:4113: checking whether we are using the GNU C++ compiler >configure:4132: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:4132: $? = 0 >configure:4141: result: yes >configure:4157: checking dependency style of x86_64-pc-linux-gnu-g++ >configure:4268: result: none >configure:4401: WARNING: No MPI c++ compiler found, will use fake implementation! >configure:4600: checking whether x86_64-pc-linux-gnu-g++ understands -c and -o together >configure:4624: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c conftest.cpp -o conftest2.o >&5 >configure:4628: $? = 0 >configure:4635: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -c conftest.cpp -o conftest2.o >&5 >configure:4639: $? = 0 >configure:4647: result: yes >configure:4713: checking how to print strings >configure:4740: result: printf >configure:4769: checking for x86_64-pc-linux-gnu-gcc >configure:4785: found /usr/bin/x86_64-pc-linux-gnu-gcc >configure:4796: result: x86_64-pc-linux-gnu-gcc >configure:5065: checking for C compiler version >configure:5074: x86_64-pc-linux-gnu-gcc --version >&5 >x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0 >Copyright (C) 2016 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:5085: $? = 0 >configure:5074: x86_64-pc-linux-gnu-gcc -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,java,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --disable-default-ssp >Thread model: posix >gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) >configure:5085: $? = 0 >configure:5074: x86_64-pc-linux-gnu-gcc -V >&5 >x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V' >x86_64-pc-linux-gnu-gcc: fatal error: no input files >compilation terminated. >configure:5085: $? = 1 >configure:5074: x86_64-pc-linux-gnu-gcc -qversion >&5 >x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? >x86_64-pc-linux-gnu-gcc: fatal error: no input files >compilation terminated. >configure:5085: $? = 1 >configure:5089: checking whether we are using the GNU C compiler >configure:5108: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:5108: $? = 0 >configure:5117: result: yes >configure:5126: checking whether x86_64-pc-linux-gnu-gcc accepts -g >configure:5146: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 >configure:5146: $? = 0 >configure:5187: result: yes >configure:5204: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 >configure:5267: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:5267: $? = 0 >configure:5280: result: none needed >configure:5302: checking dependency style of x86_64-pc-linux-gnu-gcc >configure:5413: result: none >configure:5428: checking for a sed that does not truncate output >configure:5492: result: /bin/sed >configure:5510: checking for grep that handles long lines and -e >configure:5568: result: /bin/grep >configure:5573: checking for egrep >configure:5635: result: /bin/grep -E >configure:5640: checking for fgrep >configure:5702: result: /bin/grep -F >configure:5737: checking for ld used by x86_64-pc-linux-gnu-gcc >configure:5804: result: /usr/x86_64-pc-linux-gnu/bin/ld >configure:5811: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld >configure:5826: result: yes >configure:5838: checking for BSD- or MS-compatible name lister (nm) >configure:5887: result: /usr/bin/nm -B >configure:6017: checking the name lister (/usr/bin/nm -B) interface >configure:6024: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:6027: /usr/bin/nm -B "conftest.o" >configure:6030: output >0000000000000000 B some_variable >configure:6037: result: BSD nm >configure:6040: checking whether ln -s works >configure:6044: result: yes >configure:6052: checking the maximum length of command line arguments >configure:6182: result: 1572864 >configure:6199: checking whether the shell understands some XSI constructs >configure:6209: result: yes >configure:6213: checking whether the shell understands "+=" >configure:6219: result: yes >configure:6254: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format >configure:6294: result: func_convert_file_noop >configure:6301: checking how to convert x86_64-pc-linux-gnu file names to toolchain format >configure:6321: result: func_convert_file_noop >configure:6328: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files >configure:6335: result: -r >configure:6369: checking for x86_64-pc-linux-gnu-objdump >configure:6385: found /usr/bin/x86_64-pc-linux-gnu-objdump >configure:6396: result: x86_64-pc-linux-gnu-objdump >configure:6468: checking how to recognize dependent libraries >configure:6670: result: pass_all >configure:6715: checking for x86_64-pc-linux-gnu-dlltool >configure:6745: result: no >configure:6755: checking for dlltool >configure:6785: result: no >configure:6815: checking how to associate runtime and link libraries >configure:6842: result: printf %s\n >configure:6858: checking for x86_64-pc-linux-gnu-ar >configure:6874: found /usr/bin/x86_64-pc-linux-gnu-ar >configure:6885: result: x86_64-pc-linux-gnu-ar >configure:6966: checking for archiver @FILE support >configure:6983: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:6983: $? = 0 >configure:6986: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 >configure:6989: $? = 0 >configure:6994: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 >x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory >configure:6997: $? = 1 >configure:7009: result: @ >configure:7027: checking for x86_64-pc-linux-gnu-strip >configure:7043: found /usr/bin/x86_64-pc-linux-gnu-strip >configure:7054: result: x86_64-pc-linux-gnu-strip >configure:7126: checking for x86_64-pc-linux-gnu-ranlib >configure:7142: found /usr/bin/x86_64-pc-linux-gnu-ranlib >configure:7153: result: x86_64-pc-linux-gnu-ranlib >configure:7295: checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object >configure:7415: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:7418: $? = 0 >configure:7422: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm >configure:7425: $? = 0 >configure:7491: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp conftstm.o >&5 >configure:7494: $? = 0 >configure:7532: result: ok >configure:7569: checking for sysroot >configure:7599: result: no >configure:7677: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:7680: $? = 0 >configure:7816: checking for x86_64-pc-linux-gnu-mt >configure:7846: result: no >configure:7856: checking for mt >configure:7872: found /usr/sbin/mt >configure:7883: result: mt >configure:7906: checking if mt is a manifest tool >configure:7912: mt '-?' >usage: mt [-v] [--version] [-h] [ -f device ] command [ count ] >configure:7920: result: no >configure:8562: checking how to run the C preprocessor >configure:8593: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:8593: $? = 0 >configure:8607: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:8607: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "ESPResSo" >| #define PACKAGE_TARNAME "espresso" >| #define PACKAGE_VERSION "3.3.1" >| #define PACKAGE_STRING "ESPResSo 3.3.1" >| #define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >| #define PACKAGE_URL "" >| #define PACKAGE "espresso" >| #define VERSION "3.3.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:8632: result: x86_64-pc-linux-gnu-gcc -E >configure:8652: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:8652: $? = 0 >configure:8666: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:8666: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "ESPResSo" >| #define PACKAGE_TARNAME "espresso" >| #define PACKAGE_VERSION "3.3.1" >| #define PACKAGE_STRING "ESPResSo 3.3.1" >| #define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >| #define PACKAGE_URL "" >| #define PACKAGE "espresso" >| #define VERSION "3.3.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:8695: checking for ANSI C header files >configure:8715: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8715: $? = 0 >configure:8788: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:8788: $? = 0 >configure:8788: ./conftest >configure:8788: $? = 0 >configure:8799: result: yes >configure:8812: checking for sys/types.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for sys/stat.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for stdlib.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for string.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for memory.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for strings.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for inttypes.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for stdint.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8812: checking for unistd.h >configure:8812: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8812: $? = 0 >configure:8812: result: yes >configure:8826: checking for dlfcn.h >configure:8826: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8826: $? = 0 >configure:8826: result: yes >configure:9041: checking for objdir >configure:9056: result: .libs >configure:9327: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions >configure:9345: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 >cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C >configure:9349: $? = 0 >configure:9362: result: no >configure:9689: checking for x86_64-pc-linux-gnu-gcc option to produce PIC >configure:9696: result: -fPIC -DPIC >configure:9704: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works >configure:9722: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.c >&5 >configure:9726: $? = 0 >configure:9739: result: yes >configure:9768: checking if x86_64-pc-linux-gnu-gcc static flag -static works >configure:9796: result: yes >configure:9811: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:9832: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -o out/conftest2.o conftest.c >&5 >configure:9836: $? = 0 >configure:9858: result: yes >configure:9866: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:9913: result: yes >configure:9946: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:11099: result: yes >configure:11136: checking whether -lc should be explicitly linked in >configure:11144: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:11147: $? = 0 >configure:11162: x86_64-pc-linux-gnu-gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 >configure:11165: $? = 0 >configure:11179: result: no >configure:11339: checking dynamic linker characteristics >configure:11850: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5 >configure:11850: $? = 0 >configure:12072: result: GNU/Linux ld.so >configure:12179: checking how to hardcode library paths into programs >configure:12204: result: immediate >configure:12744: checking whether stripping libraries is possible >configure:12749: result: yes >configure:12784: checking if libtool supports shared libraries >configure:12786: result: yes >configure:12789: checking whether to build shared libraries >configure:12810: result: yes >configure:12813: checking whether to build static libraries >configure:12817: result: no >configure:12840: checking how to run the C++ preprocessor >configure:12867: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:12867: $? = 0 >configure:12881: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:12881: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "ESPResSo" >| #define PACKAGE_TARNAME "espresso" >| #define PACKAGE_VERSION "3.3.1" >| #define PACKAGE_STRING "ESPResSo 3.3.1" >| #define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >| #define PACKAGE_URL "" >| #define PACKAGE "espresso" >| #define VERSION "3.3.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:12906: result: x86_64-pc-linux-gnu-g++ -E >configure:12926: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:12926: $? = 0 >configure:12940: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:12940: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "ESPResSo" >| #define PACKAGE_TARNAME "espresso" >| #define PACKAGE_VERSION "3.3.1" >| #define PACKAGE_STRING "ESPResSo 3.3.1" >| #define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >| #define PACKAGE_URL "" >| #define PACKAGE "espresso" >| #define VERSION "3.3.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:13109: checking for ld used by x86_64-pc-linux-gnu-g++ >configure:13176: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >configure:13183: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld >configure:13198: result: yes >configure:13253: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:14258: result: yes >configure:14294: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:14297: $? = 0 >configure:14817: checking for x86_64-pc-linux-gnu-g++ option to produce PIC >configure:14824: result: -fPIC -DPIC >configure:14832: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works >configure:14850: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.cpp >&5 >configure:14854: $? = 0 >configure:14867: result: yes >configure:14890: checking if x86_64-pc-linux-gnu-g++ static flag -static works >configure:14918: result: yes >configure:14930: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:14951: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -o out/conftest2.o conftest.cpp >&5 >configure:14955: $? = 0 >configure:14977: result: yes >configure:14982: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:15029: result: yes >configure:15059: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:15095: result: yes >configure:15236: checking dynamic linker characteristics >configure:15903: result: GNU/Linux ld.so >configure:15956: checking how to hardcode library paths into programs >configure:15981: result: immediate >configure:16046: checking for gawk >configure:16073: result: gawk >configure:16084: checking for egrep >configure:16146: result: /bin/grep -E >configure:16152: checking whether ln -s works >configure:16156: result: yes >configure:16165: checking for doxygen >configure:16196: result: no >configure:16214: checking for dot >configure:16245: result: no >configure:16281: checking for pdflatex >configure:16312: result: no >configure:16322: checking for makeindex >configure:16353: result: no >configure:16363: checking for bibtex >configure:16394: result: no >configure:16423: checking for ANSI C header files >configure:16527: result: yes >configure:16540: checking arpa/inet.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking arpa/inet.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for arpa/inet.h >configure:16540: result: yes >configure:16540: checking fcntl.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking fcntl.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for fcntl.h >configure:16540: result: yes >configure:16540: checking float.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking float.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for float.h >configure:16540: result: yes >configure:16540: checking for inttypes.h >configure:16540: result: yes >configure:16540: checking limits.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking limits.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for limits.h >configure:16540: result: yes >configure:16540: checking netdb.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking netdb.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for netdb.h >configure:16540: result: yes >configure:16540: checking netinet/in.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking netinet/in.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for netinet/in.h >configure:16540: result: yes >configure:16540: checking stddef.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking stddef.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for stddef.h >configure:16540: result: yes >configure:16540: checking for stdlib.h >configure:16540: result: yes >configure:16540: checking for string.h >configure:16540: result: yes >configure:16540: checking for strings.h >configure:16540: result: yes >configure:16540: checking sys/file.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking sys/file.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for sys/file.h >configure:16540: result: yes >configure:16540: checking sys/socket.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking sys/socket.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for sys/socket.h >configure:16540: result: yes >configure:16540: checking sys/time.h usability >configure:16540: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking sys/time.h presence >configure:16540: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16540: $? = 0 >configure:16540: result: yes >configure:16540: checking for sys/time.h >configure:16540: result: yes >configure:16540: checking for unistd.h >configure:16540: result: yes >configure:16561: checking for stdlib.h >configure:16561: result: yes >configure:16571: checking for GNU libc compatible malloc >configure:16595: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16595: $? = 0 >configure:16595: ./conftest >configure:16595: $? = 0 >configure:16605: result: yes >configure:16626: checking for working memcmp >configure:16669: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16669: $? = 0 >configure:16669: ./conftest >configure:16669: $? = 0 >configure:16679: result: yes >configure:16690: checking for stdlib.h >configure:16690: result: yes >configure:16700: checking for GNU libc compatible realloc >configure:16724: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16724: $? = 0 >configure:16724: ./conftest >configure:16724: $? = 0 >configure:16734: result: yes >configure:16758: checking sys/select.h usability >configure:16758: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16758: $? = 0 >configure:16758: result: yes >configure:16758: checking sys/select.h presence >configure:16758: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16758: $? = 0 >configure:16758: result: yes >configure:16758: checking for sys/select.h >configure:16758: result: yes >configure:16758: checking for sys/socket.h >configure:16758: result: yes >configure:16768: checking types of arguments for select >configure:16796: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16796: $? = 0 >configure:16807: result: int,fd_set *,struct timeval * >configure:16830: checking for size_t >configure:16830: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16830: $? = 0 >configure:16830: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:84:20: error: expected primary-expression before ')' token > if (sizeof ((size_t))) > ^ >configure:16830: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "ESPResSo" >| #define PACKAGE_TARNAME "espresso" >| #define PACKAGE_VERSION "3.3.1" >| #define PACKAGE_STRING "ESPResSo 3.3.1" >| #define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >| #define PACKAGE_URL "" >| #define PACKAGE "espresso" >| #define VERSION "3.3.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define STDC_HEADERS 1 >| #define HAVE_ARPA_INET_H 1 >| #define HAVE_FCNTL_H 1 >| #define HAVE_FLOAT_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_LIMITS_H 1 >| #define HAVE_NETDB_H 1 >| #define HAVE_NETINET_IN_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_SYS_FILE_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_MALLOC 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_REALLOC 1 >| #define HAVE_SYS_SELECT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define SELECT_TYPE_ARG1 int >| #define SELECT_TYPE_ARG234 (fd_set *) >| #define SELECT_TYPE_ARG5 (struct timeval *) >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| int >| main () >| { >| if (sizeof ((size_t))) >| return 0; >| ; >| return 0; >| } >configure:16830: result: yes >configure:16841: checking for working strtod >configure:16882: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:90:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] > char *string = " +69"; > ^~~~~~ >conftest.cpp:101:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] > char *string = "NaN"; > ^~~~~ >configure:16882: $? = 0 >configure:16882: ./conftest >configure:16882: $? = 0 >configure:16892: result: yes >configure:16957: checking for atexit >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for floor >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for getcwd >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for gethostbyname >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for memset >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for pow >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for rint >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for select >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for socket >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16957: checking for sqrt >configure:16957: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16957: $? = 0 >configure:16957: result: yes >configure:16980: checking whether to use FFTW >configure:16990: result: yes >configure:16997: checking for libfftw3 >configure:17021: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lfftw3 -lm >&5 >configure:17021: $? = 0 >configure:17057: result: yes >configure:17073: checking for fftw3.h >configure:17083: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:17083: $? = 0 >configure:17105: result: yes >configure:17151: checking whether to use CUDA >configure:17161: result: no >configure:17182: checking for nvcc >configure:17214: result: no >configure:19246: checking for a Python interpreter with version >= 2.5 >configure:19263: python -c import sys # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. # map returns an iterator in Python 3.0 and a list in 2.x minver = list(map(int, '2.5'.split('.'))) + [0, 0, 0] minverhex = 0 # xrange is not present in Python 3.0 and range returns an iterator for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex) >configure:19266: $? = 0 >configure:19272: result: python >configure:19280: checking for python >configure:19298: found /usr/bin/python >configure:19310: result: /usr/bin/python >configure:19328: checking for python version >configure:19335: result: 3.4 >configure:19347: checking for python platform >configure:19354: result: linux >configure:19380: checking for python script directory >configure:19415: result: ${prefix}/lib64/python3.4/site-packages >configure:19424: checking for python extension module directory >configure:19459: result: ${exec_prefix}/lib64/python3.4/site-packages >configure:19482: checking whether python -B works >configure:19486: result: yes >configure:19494: checking whether the python interface is wanted >configure:19504: result: no >configure:20050: checking whether to build the Tcl interface >configure:20060: result: yes >configure:20073: checking for libtcl8.6 >configure:20097: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -ltcl8.6 -lfftw3 -lm >&5 >configure:20097: $? = 0 >configure:20133: result: yes >configure:20256: checking for tcl.h >configure:20266: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:20266: $? = 0 >configure:20288: result: yes >configure:20328: checking whether to use Tk >configure:20338: result: yes >configure:21307: checking whether to use efence >configure:21400: result: no >configure:21406: checking whether the variable MYCONFIG is set >configure:21422: result: no >configure:21442: checking the number of available CPUs >configure:21485: result: 12 >configure:21636: checking that generated files are newer than configure >configure:21642: result: done >configure:21709: creating ./config.status > >## ---------------------- ## >## Running config.status. ## >## ---------------------- ## > >This file was extended by ESPResSo config.status 3.3.1, which was >generated by GNU Autoconf 2.69. Invocation command line was > > CONFIG_FILES = > CONFIG_HEADERS = > CONFIG_LINKS = > CONFIG_COMMANDS = > $ ./config.status > >on mr-fox > >config.status:1323: creating Makefile >config.status:1323: creating config/Makefile >config.status:1323: creating config/myconfig-sample-header.hpp >config.status:1323: creating src/Makefile >config.status:1323: creating src/core/Makefile >config.status:1323: creating src/tcl/Makefile >config.status:1323: creating src/python/espressomd/Makefile >config.status:1323: creating tools/Makefile >config.status:1323: creating scripts/Makefile >config.status:1323: creating testsuite/Makefile >config.status:1323: creating doc/Makefile >config.status:1323: creating doc/logo/Makefile >config.status:1323: creating doc/ug/Makefile >config.status:1323: creating doc/dg/Makefile >config.status:1323: creating doc/doxygen/Makefile >config.status:1323: creating doc/tutorials/Makefile >config.status:1323: creating doc/tutorials/01-lennard_jones/Makefile >config.status:1323: creating doc/tutorials/02-charged_system/Makefile >config.status:1323: creating doc/tutorials/03-object_in_fluid/Makefile >config.status:1323: creating doc/latexit.sh >config.status:1323: creating testsuite/runtest.sh >config.status:1323: creating tools/es_mpiexec >config.status:1323: creating src/python/pypresso >config.status:1323: creating src/acconfig.hpp >config.status:1552: executing depfiles commands >config.status:1552: executing libtool commands >config.status:1552: executing myconfig-sample.hpp commands > >## ---------------- ## >## Cache variables. ## >## ---------------- ## > >ac_cv_build=x86_64-pc-linux-gnu >ac_cv_c_compiler_gnu=yes >ac_cv_cxx_compiler_gnu=yes >ac_cv_env_CCC_set= >ac_cv_env_CCC_value= >ac_cv_env_CC_set= >ac_cv_env_CC_value= >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_CPU_COUNT_set= >ac_cv_env_CPU_COUNT_value= >ac_cv_env_CXXCPP_set= >ac_cv_env_CXXCPP_value= >ac_cv_env_CXXFLAGS_set=set >ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CXX_set=set >ac_cv_env_CXX_value=x86_64-pc-linux-gnu-g++ >ac_cv_env_LDFLAGS_set=set >ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_cv_env_LIBS_set= >ac_cv_env_LIBS_value= >ac_cv_env_MPICXX_set= >ac_cv_env_MPICXX_value= >ac_cv_env_MPIEXEC_set= >ac_cv_env_MPIEXEC_value= >ac_cv_env_MYCONFIG_set= >ac_cv_env_MYCONFIG_value= >ac_cv_env_NVCCFLAGS_set= >ac_cv_env_NVCCFLAGS_value= >ac_cv_env_NVCC_set= >ac_cv_env_NVCC_value= >ac_cv_env_PYTHON_VERSION_set= >ac_cv_env_PYTHON_VERSION_value= >ac_cv_env_PYTHON_set= >ac_cv_env_PYTHON_value= >ac_cv_env_XMKMF_set= >ac_cv_env_XMKMF_value= >ac_cv_env_build_alias_set=set >ac_cv_env_build_alias_value=x86_64-pc-linux-gnu >ac_cv_env_host_alias_set=set >ac_cv_env_host_alias_value=x86_64-pc-linux-gnu >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_func_atexit=yes >ac_cv_func_floor=yes >ac_cv_func_getcwd=yes >ac_cv_func_gethostbyname=yes >ac_cv_func_malloc_0_nonnull=yes >ac_cv_func_memcmp_working=yes >ac_cv_func_memset=yes >ac_cv_func_pow=yes >ac_cv_func_realloc_0_nonnull=yes >ac_cv_func_rint=yes >ac_cv_func_select=yes >ac_cv_func_select_args='int,fd_set *,struct timeval *' >ac_cv_func_socket=yes >ac_cv_func_sqrt=yes >ac_cv_func_strtod=yes >ac_cv_header_arpa_inet_h=yes >ac_cv_header_dlfcn_h=yes >ac_cv_header_fcntl_h=yes >ac_cv_header_float_h=yes >ac_cv_header_inttypes_h=yes >ac_cv_header_limits_h=yes >ac_cv_header_memory_h=yes >ac_cv_header_netdb_h=yes >ac_cv_header_netinet_in_h=yes >ac_cv_header_stdc=yes >ac_cv_header_stddef_h=yes >ac_cv_header_stdint_h=yes >ac_cv_header_stdlib_h=yes >ac_cv_header_string_h=yes >ac_cv_header_strings_h=yes >ac_cv_header_sys_file_h=yes >ac_cv_header_sys_select_h=yes >ac_cv_header_sys_socket_h=yes >ac_cv_header_sys_stat_h=yes >ac_cv_header_sys_time_h=yes >ac_cv_header_sys_types_h=yes >ac_cv_header_unistd_h=yes >ac_cv_host=x86_64-pc-linux-gnu >ac_cv_objext=o >ac_cv_path_BIBTEX=no >ac_cv_path_DOT=no >ac_cv_path_DOXYGEN=no >ac_cv_path_EGREP='/bin/grep -E' >ac_cv_path_FGREP='/bin/grep -F' >ac_cv_path_GREP=/bin/grep >ac_cv_path_MAKEINDEX=no >ac_cv_path_NVCC=no >ac_cv_path_PDFLATEX=no >ac_cv_path_PYTHON=/usr/bin/python >ac_cv_path_SED=/bin/sed >ac_cv_path_install='/usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c' >ac_cv_path_mkdir=/bin/mkdir >ac_cv_prog_AR=x86_64-pc-linux-gnu-ar >ac_cv_prog_AWK=gawk >ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc >ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' >ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E' >ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump >ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib >ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip >ac_cv_prog_ac_ct_MANIFEST_TOOL=mt >ac_cv_prog_cc_c89= >ac_cv_prog_cc_g=yes >ac_cv_prog_cxx_c_o=yes >ac_cv_prog_make_make_set=yes >ac_cv_target=x86_64-pc-linux-gnu >ac_cv_type_size_t=yes >am_cv_CC_dependencies_compiler_type=none >am_cv_CXX_dependencies_compiler_type=none >am_cv_make_support_nested_variables=yes >am_cv_pathless_PYTHON=python >am_cv_prog_tar_ustar=gnutar >am_cv_python_platform=linux >am_cv_python_pyexecdir='${exec_prefix}/lib64/python3.4/site-packages' >am_cv_python_pythondir='${prefix}/lib64/python3.4/site-packages' >am_cv_python_version=3.4 >lt_cv_ar_at_file=@ >lt_cv_archive_cmds_need_lc=no >lt_cv_deplibs_check_method=pass_all >lt_cv_file_magic_cmd='$MAGIC_CMD' >lt_cv_file_magic_test_file= >lt_cv_ld_reload_flag=-r >lt_cv_nm_interface='BSD nm' >lt_cv_objdir=.libs >lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld >lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >lt_cv_path_NM='/usr/bin/nm -B' >lt_cv_path_mainfest_tool=no >lt_cv_prog_compiler_c_o=yes >lt_cv_prog_compiler_c_o_CXX=yes >lt_cv_prog_compiler_pic='-fPIC -DPIC' >lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' >lt_cv_prog_compiler_pic_works=yes >lt_cv_prog_compiler_pic_works_CXX=yes >lt_cv_prog_compiler_rtti_exceptions=no >lt_cv_prog_compiler_static_works=yes >lt_cv_prog_compiler_static_works_CXX=yes >lt_cv_prog_gnu_ld=yes >lt_cv_prog_gnu_ldcxx=yes >lt_cv_sharedlib_from_linklib_cmd='printf %s\n' >lt_cv_shlibpath_overrides_runpath=yes >lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' >lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' >lt_cv_sys_max_cmd_len=1572864 >lt_cv_to_host_file_cmd=func_convert_file_noop >lt_cv_to_tool_file_cmd=func_convert_file_noop > >## ----------------- ## >## Output variables. ## >## ----------------- ## > >ACLOCAL='aclocal-1.13' >AMDEPBACKSLASH='' >AMDEP_FALSE='' >AMDEP_TRUE='#' >AMTAR='$${TAR-tar}' >AM_BACKSLASH='\' >AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' >AM_DEFAULT_VERBOSITY='1' >AM_V='$(V)' >AR='x86_64-pc-linux-gnu-ar' >AUTOCONF='autoconf' >AUTOHEADER='autoheader' >AUTOMAKE='automake-1.13' >AWK='gawk' >BIBTEX='no' >CC='x86_64-pc-linux-gnu-gcc' >CCDEPMODE='depmode=none' >CFLAGS='-march=native -O2 -pipe' >CONFIG_STATUS_DEPENDENCIES='$(top_srcdir)/src/features.def $(top_srcdir)/config/gen_sampleconfig.py' >CPP='x86_64-pc-linux-gnu-gcc -E' >CPPFLAGS='' >CPU_COUNT='12' >CUDA_FALSE='' >CUDA_TRUE='#' >CXX='x86_64-pc-linux-gnu-g++' >CXXCPP='x86_64-pc-linux-gnu-g++ -E' >CXXDEPMODE='depmode=none' >CXXFLAGS='-march=native -O2 -pipe' >CYGPATH_W='echo' >CYTHON='' >DEFS='-DHAVE_CONFIG_H' >DEPDIR='.deps' >DEVEL_SRC_FALSE='' >DEVEL_SRC_TRUE='#' >DLLTOOL='false' >DOT='no' >DOT_PATH='.' >DOXYGEN='no' >DSYMUTIL='' >DUMPBIN='' >ECHO_C='' >ECHO_N='-n' >ECHO_T='' >EGREP='/bin/grep -E' >ESPRESSO_MPIEXEC='' >EXEEXT='' >FGREP='/bin/grep -F' >GREP='/bin/grep' >HAVE_DOT='NO' >HAVE_DOXYGEN_FALSE='' >HAVE_DOXYGEN_TRUE='#' >HAVE_LATEX_FALSE='' >HAVE_LATEX_TRUE='#' >HAVE_PYTHON_FALSE='#' >HAVE_PYTHON_TRUE='' >INSTALL_DATA='${INSTALL} -m 644' >INSTALL_PROGRAM='${INSTALL}' >INSTALL_SCRIPT='${INSTALL}' >INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' >LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >LDFLAGS='-Wl,-O1 -Wl,--as-needed' >LIBOBJS='' >LIBS='-ltcl8.6 -lfftw3 -lm' >LIBTOOL='$(SHELL) $(top_builddir)/libtool' >LIPO='' >LN_S='ln -s' >LTLIBOBJS='' >MAINT='#' >MAINTAINER_MODE_FALSE='' >MAINTAINER_MODE_TRUE='#' >MAKEINDEX='no' >MAKEINFO='makeinfo' >MANIFEST_TOOL=':' >MKDIR_P='/bin/mkdir -p' >MPICXX='' >MPIEXEC='' >MPI_FAKE='yes' >MPI_FAKE_FALSE='#' >MPI_FAKE_TRUE='' >MYCONFIG='myconfig.hpp' >MYCONFIG_FALSE='' >MYCONFIG_TRUE='#' >MYMPIEXEC='' >NM='/usr/bin/nm -B' >NMEDIT='' >NVCC='no' >NVCCFLAGS='' >OBJDUMP='x86_64-pc-linux-gnu-objdump' >OBJEXT='o' >OTOOL64='' >OTOOL='' >PACKAGE='espresso' >PACKAGE_BUGREPORT='espressomd-users@nongnu.org' >PACKAGE_NAME='ESPResSo' >PACKAGE_STRING='ESPResSo 3.3.1' >PACKAGE_TARNAME='espresso' >PACKAGE_URL='' >PACKAGE_VERSION='3.3.1' >PATH_SEPARATOR=':' >PDFLATEX='no' >POW_LIB='' >PYTHON='/usr/bin/python -B' >PYTHONCONFIG='' >PYTHON_CPPFLAGS='' >PYTHON_EXEC_PREFIX='${exec_prefix}' >PYTHON_EXTRA_LDFLAGS='' >PYTHON_EXTRA_LIBS='' >PYTHON_INTERFACE_FALSE='' >PYTHON_INTERFACE_TRUE='#' >PYTHON_LDFLAGS='' >PYTHON_PLATFORM='linux' >PYTHON_PREFIX='${prefix}' >PYTHON_SITE_PKG='' >PYTHON_VERSION='3.4' >RANLIB='x86_64-pc-linux-gnu-ranlib' >SED='/bin/sed' >SET_MAKE='' >SHELL='/bin/sh' >STRIP='x86_64-pc-linux-gnu-strip' >TCL_FALSE='#' >TCL_TRUE='' >VERSION='3.3.1' >XMKMF='' >X_CFLAGS='' >X_EXTRA_LIBS='' >X_LIBS='' >X_PRE_LIBS='' >ac_ct_AR='' >ac_ct_CC='' >ac_ct_CXX='' >ac_ct_DUMPBIN='' >am__EXEEXT_FALSE='' >am__EXEEXT_TRUE='#' >am__fastdepCC_FALSE='' >am__fastdepCC_TRUE='#' >am__fastdepCXX_FALSE='' >am__fastdepCXX_TRUE='#' >am__include='include' >am__isrc='' >am__leading_dot='.' >am__nodep='' >am__quote='' >am__tar='tar --format=ustar -chf - "$$tardir"' >am__untar='tar -xf -' >bindir='${exec_prefix}/bin' >build='x86_64-pc-linux-gnu' >build_alias='x86_64-pc-linux-gnu' >build_cpu='x86_64' >build_os='linux-gnu' >build_vendor='pc' >buildscriptsdir='${abs_top_builddir}/scripts' >datadir='/usr/share' >datarootdir='${prefix}/share' >docdir='/usr/share/doc/espresso-3.3.1' >dvidir='${docdir}' >exec_prefix='${prefix}' >host='x86_64-pc-linux-gnu' >host_alias='x86_64-pc-linux-gnu' >host_cpu='x86_64' >host_os='linux-gnu' >host_vendor='pc' >htmldir='/usr/share/doc/espresso-3.3.1/html' >includedir='${prefix}/include' >infodir='/usr/share/info' >install_sh='${SHELL} /var/tmp/portage/sci-physics/espresso-3.3.1/work/espresso-3.3.1/config/install-sh' >libdir='/usr/lib64' >libexecdir='${exec_prefix}/libexec' >localedir='${datarootdir}/locale' >localstatedir='/var/lib' >mandir='/usr/share/man' >mkdir_p='$(MKDIR_P)' >objdir='.libs' >oldincludedir='/usr/include' >pdfdir='${docdir}' >pkgpyexecdir='${pyexecdir}/espresso' >pkgpythondir='${pythondir}/espresso' >prefix='/usr' >program_transform_name='s,x,x,' >psdir='${docdir}' >pyexecdir='${exec_prefix}/lib64/python3.4/site-packages' >pythondir='${prefix}/lib64/python3.4/site-packages' >sbindir='${exec_prefix}/sbin' >scriptsdir='${pkgdatadir}/scripts' >sharedstatedir='${prefix}/com' >sysconfdir='/etc' >target='x86_64-pc-linux-gnu' >target_alias='' >target_cpu='x86_64' >target_os='linux-gnu' >target_vendor='pc' >toolsdir='${pkgdatadir}/tools' > >## ----------- ## >## confdefs.h. ## >## ----------- ## > >/* confdefs.h */ >#define PACKAGE_NAME "ESPResSo" >#define PACKAGE_TARNAME "espresso" >#define PACKAGE_VERSION "3.3.1" >#define PACKAGE_STRING "ESPResSo 3.3.1" >#define PACKAGE_BUGREPORT "espressomd-users@nongnu.org" >#define PACKAGE_URL "" >#define PACKAGE "espresso" >#define VERSION "3.3.1" >#define STDC_HEADERS 1 >#define HAVE_SYS_TYPES_H 1 >#define HAVE_SYS_STAT_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_STRING_H 1 >#define HAVE_MEMORY_H 1 >#define HAVE_STRINGS_H 1 >#define HAVE_INTTYPES_H 1 >#define HAVE_STDINT_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_DLFCN_H 1 >#define LT_OBJDIR ".libs/" >#define STDC_HEADERS 1 >#define HAVE_ARPA_INET_H 1 >#define HAVE_FCNTL_H 1 >#define HAVE_FLOAT_H 1 >#define HAVE_INTTYPES_H 1 >#define HAVE_LIMITS_H 1 >#define HAVE_NETDB_H 1 >#define HAVE_NETINET_IN_H 1 >#define HAVE_STDDEF_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_STRING_H 1 >#define HAVE_STRINGS_H 1 >#define HAVE_SYS_FILE_H 1 >#define HAVE_SYS_SOCKET_H 1 >#define HAVE_SYS_TIME_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_MALLOC 1 >#define HAVE_STDLIB_H 1 >#define HAVE_REALLOC 1 >#define HAVE_SYS_SELECT_H 1 >#define HAVE_SYS_SOCKET_H 1 >#define SELECT_TYPE_ARG1 int >#define SELECT_TYPE_ARG234 (fd_set *) >#define SELECT_TYPE_ARG5 (struct timeval *) >#define HAVE_ATEXIT 1 >#define HAVE_FLOOR 1 >#define HAVE_GETCWD 1 >#define HAVE_GETHOSTBYNAME 1 >#define HAVE_MEMSET 1 >#define HAVE_POW 1 >#define HAVE_RINT 1 >#define HAVE_SELECT 1 >#define HAVE_SOCKET 1 >#define HAVE_SQRT 1 >#define FFTW /**/ >#define USE_NON_CONST 1 >#define TCL /**/ > >configure: exit 0
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