Attachment 447606 Details for Bug 594928 – sci-biology:amos-3.1.0-r1:20160923-145247.log

sci-biology:amos-3.1.0-r1:20160923-145247.log

sci-biology:amos-3.1.0-r1:20160923-145247.log (text/plain), 82.43 KB, created by Toralf Förster on 2016-09-23 18:15:42 UTC

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Creator: Toralf Förster

Created: 2016-09-23 18:15:42 UTC

Size: 82.43 KB

patch

obsolete

> * Package:    sci-biology/amos-3.1.0-r1
> * Repository: gentoo
> * Maintainer: sci-biology@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 qt4 userland_GNU
> * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>>> Unpacking source...
>>>> Unpacking amos-3.1.0.tar.gz to /var/tmp/portage/sci-biology/amos-3.1.0-r1/work
>>>> Source unpacked in /var/tmp/portage/sci-biology/amos-3.1.0-r1/work
>>>> Preparing source in /var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0 ...
> * Applying amos-3.1.0-gcc-4.7.patch ...
> [ ok ]
> * Applying amos-3.1.0-goBambus2.py-indent-and-cleanup.patch ...
> [ ok ]
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0 ...
> * econf: updating amos-3.1.0/config/config.sub with /usr/share/gnuconfig/config.sub
> * econf: updating amos-3.1.0/config/config.guess with /usr/share/gnuconfig/config.guess
>./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64
>checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
>checking whether build environment is sane... yes
>checking for a thread-safe mkdir -p... /bin/mkdir -p
>checking for gawk... gawk
>checking whether make sets $(MAKE)... yes
>checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
>checking whether the C++ compiler works... yes
>checking for C++ compiler default output file name... a.out
>checking for suffix of executables... 
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C++ compiler... yes
>checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
>checking for style of include used by make... GNU
>checking dependency style of x86_64-pc-linux-gnu-g++... none
>checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
>checking whether we are using the GNU C compiler... yes
>checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
>checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
>checking dependency style of x86_64-pc-linux-gnu-gcc... none
>checking for gawk... (cached) gawk
>checking whether ln -s works... yes
>checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
>checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
>checking for perl... /usr/bin/perl
>checking for python... /usr/bin/python
>checking for nucmer... /usr/bin/nucmer
>checking for delta-filter... /usr/bin/delta-filter
>checking for show-coords... /usr/bin/show-coords
>checking for blat... /usr/bin/blat
>checking for perl module Statistics::Descriptive... ok
>checking for perl module XML::Parser... ok
>checking for perl module DBI... ok
>checking for pow in -lm... yes
>checking for fopen in -lc... yes
>checking for main in -lz... yes
>checking for dirent.h that defines DIR... yes
>checking for library containing opendir... none required
>checking for grep that handles long lines and -e... /bin/grep
>checking for egrep... /bin/grep -E
>checking for ANSI C header files... yes
>checking for sys/wait.h that is POSIX.1 compatible... yes
>checking for sys/types.h... yes
>checking for sys/stat.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for memory.h... yes
>checking for strings.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for unistd.h... yes
>checking fcntl.h usability... yes
>checking fcntl.h presence... yes
>checking for fcntl.h... yes
>checking for inttypes.h... (cached) yes
>checking limits.h usability... yes
>checking limits.h presence... yes
>checking for limits.h... yes
>checking for stdlib.h... (cached) yes
>checking for unistd.h... (cached) yes
>checking for stdbool.h that conforms to C99... yes
>checking for _Bool... yes
>checking for an ANSI C-conforming const... yes
>checking for inline... inline
>checking for pid_t... yes
>checking for size_t... yes
>checking for mode_t... yes
>checking whether struct tm is in sys/time.h or time.h... time.h
>checking whether byte ordering is bigendian... no
>checking for special C compiler options needed for large files... no
>checking for _FILE_OFFSET_BITS value needed for large files... no
>checking whether bitfields are packed htol... no
>checking for X... libraries , headers 
>checking for gethostbyname... yes
>checking for connect... yes
>checking for remove... yes
>checking for shmat... yes
>checking for IceConnectionNumber in -lICE... yes
>checking for Qt4... yes
>checking whether Qt4 works... no
>checking for Boost... no
>checking whether Boost works... no
>checking for CA... no
>checking whether CA works... no
>checking getopt.h usability... yes
>checking getopt.h presence... yes
>checking for getopt.h... yes
>checking for getopt_long_only... yes
>checking for working strtod... yes
>checking for isascii... yes
>checking for strtol... yes
>checking vfork.h usability... no
>checking vfork.h presence... no
>checking for vfork.h... no
>checking for fork... yes
>checking for vfork... yes
>checking for working fork... yes
>checking for working vfork... (cached) yes
>checking sys/select.h usability... yes
>checking sys/select.h presence... yes
>checking for sys/select.h... yes
>checking sys/socket.h usability... yes
>checking sys/socket.h presence... yes
>checking for sys/socket.h... yes
>checking types of arguments for select... int,fd_set *,struct timeval *
>checking for strftime... yes
>checking for dup2... yes
>checking for floor... yes
>checking for localtime... yes
>checking for lstat... yes
>checking for memmove... yes
>checking for memset... yes
>checking for mkdir... yes
>checking for pow... yes
>checking for rmdir... yes
>checking for sqrt... yes
>checking for stat... yes
>checking for strchr... yes
>checking for strdup... yes
>checking for strstr... yes
>checking build system type... x86_64-pc-linux-gnu
>checking host system type... x86_64-pc-linux-gnu
>checking whether to build AMOScmp... (cached) no
>checking whether to build minimus... (cached) no
>checking whether to build Simulator... (cached) no
>checking whether to build Experimental... (cached) no
>checking whether to build all... (cached) yes
>configure: creating ./config.status
>config.status: creating Makefile
>config.status: creating doc/Makefile
>config.status: creating src/Makefile
>config.status: creating src/GNU/Makefile
>config.status: creating src/AMOS/Makefile
>config.status: creating src/Bambus/Makefile
>config.status: creating src/Bambus/Bundler/Makefile
>config.status: creating src/Bambus/Output/Makefile
>config.status: creating src/Bambus/Untangler/Makefile
>config.status: creating src/Common/Makefile
>config.status: creating src/Graph/Makefile
>config.status: creating src/Slice/Makefile
>config.status: creating src/CelMsg/Makefile
>config.status: creating src/Message/Makefile
>config.status: creating src/Bank/Makefile
>config.status: creating src/Align/Makefile
>config.status: creating src/Tigger/Makefile
>config.status: creating src/Compare/Makefile
>config.status: creating src/Casm/Makefile
>config.status: creating src/CtgTrim/Makefile
>config.status: creating src/Sim/Makefile
>config.status: creating src/Validation/Makefile
>config.status: creating src/Converters/Makefile
>config.status: creating src/Utils/Makefile
>config.status: creating src/PerlModules/Makefile
>config.status: creating src/PythonModules/Makefile
>config.status: creating src/Pipeline/Makefile
>config.status: creating src/Staden/Makefile
>config.status: creating src/Staden/read/Makefile
>config.status: creating src/Staden/progs/Makefile
>config.status: creating src/Contig/Makefile
>config.status: creating src/Foundation/Makefile
>config.status: creating src/hawkeye/Makefile
>config.status: creating src/Experimental/Makefile
>config.status: creating config.h
>config.status: executing depfiles commands
>
>-- AMOS Assembler 3.1.0 Configuration Results --
>  C compiler:          x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe
>  C++ compiler:        x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe
>  GCC version:         x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0
>  Host System type:    x86_64-pc-linux-gnu
>  Install prefix:      /usr
>  Install eprefix:     ${prefix}
>
>  See config.h for further configuration information.
>  Email <amos-help@lists.sourceforge.net> with questions and bug reports.
>
>WARNING! Qt4 toolkit malfunctioning but is required to run AMOS GUIs
>   try compiling GUIs manually or reinstall Qt4 toolkit to build GUIs
>   see config.log for more information on what went wrong
>WARNING! Boost graph toolkit was not found but is required to run parts of the AMOS Scaffolder (Bambus 2)
>   install Boost or locate Boost with configure to build Scaffolder
>   see config.log for more information on what went wrong
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0 ...
>make -j1 -j1 
>make  all-recursive
>make[1]: Entering directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0'
>Making all in src
>make[2]: Entering directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src'
>Making all in GNU
>make[3]: Entering directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/GNU'
>make  all-am
>make[4]: Entering directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/GNU'
>x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c gnu.c
>rm -f libGNU.a
>ar cru libGNU.a gnu.o 
>x86_64-pc-linux-gnu-ranlib libGNU.a
>make[4]: Leaving directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/GNU'
>make[3]: Leaving directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/GNU'
>Making all in AMOS
>make[3]: Entering directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/AMOS'
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-BankStream_AMOS.o `test -f 'BankStream_AMOS.cc' || echo './'`BankStream_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Bank_AMOS.hh:22,
>                 from BankStream_AMOS.hh:13,
>                 from BankStream_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Bank_AMOS.hh:22,
>                 from BankStream_AMOS.hh:13,
>                 from BankStream_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Bank_AMOS.o `test -f 'Bank_AMOS.cc' || echo './'`Bank_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Bank_AMOS.hh:22,
>                 from Bank_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Bank_AMOS.hh:22,
>                 from Bank_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-ContigEdge_AMOS.o `test -f 'ContigEdge_AMOS.cc' || echo './'`ContigEdge_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from ContigEdge_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from ContigEdge_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-ContigIterator_AMOS.o `test -f 'ContigIterator_AMOS.cc' || echo './'`ContigIterator_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Contig_AMOS.hh:13,
>                 from ContigIterator_AMOS.hh:15,
>                 from ContigIterator_AMOS.cc:3:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Contig_AMOS.hh:13,
>                 from ContigIterator_AMOS.hh:15,
>                 from ContigIterator_AMOS.cc:3:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-ContigLink_AMOS.o `test -f 'ContigLink_AMOS.cc' || echo './'`ContigLink_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from ContigLink_AMOS.hh:13,
>                 from ContigLink_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from ContigLink_AMOS.hh:13,
>                 from ContigLink_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Motif_AMOS.o `test -f 'Motif_AMOS.cc' || echo './'`Motif_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Motif_AMOS.hh:13,
>                 from Motif_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Motif_AMOS.hh:13,
>                 from Motif_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Contig_AMOS.o `test -f 'Contig_AMOS.cc' || echo './'`Contig_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Contig_AMOS.hh:13,
>                 from Contig_AMOS.cc:11:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Contig_AMOS.hh:13,
>                 from Contig_AMOS.cc:11:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Edge_AMOS.o `test -f 'Edge_AMOS.cc' || echo './'`Edge_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from Edge_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from Edge_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Feature_AMOS.o `test -f 'Feature_AMOS.cc' || echo './'`Feature_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Feature_AMOS.hh:13,
>                 from Feature_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Feature_AMOS.hh:13,
>                 from Feature_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Fragment_AMOS.o `test -f 'Fragment_AMOS.cc' || echo './'`Fragment_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Fragment_AMOS.hh:13,
>                 from Fragment_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Fragment_AMOS.hh:13,
>                 from Fragment_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Group_AMOS.o `test -f 'Group_AMOS.cc' || echo './'`Group_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Group_AMOS.hh:13,
>                 from Group_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Group_AMOS.hh:13,
>                 from Group_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-IDMap_AMOS.o `test -f 'IDMap_AMOS.cc' || echo './'`IDMap_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from IDMap_AMOS.hh:13,
>                 from IDMap_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from IDMap_AMOS.hh:13,
>                 from IDMap_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Index_AMOS.o `test -f 'Index_AMOS.cc' || echo './'`Index_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from universals_AMOS.hh:13,
>                 from Index_AMOS.hh:13,
>                 from Index_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from universals_AMOS.hh:13,
>                 from Index_AMOS.hh:13,
>                 from Index_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Kmer_AMOS.o `test -f 'Kmer_AMOS.cc' || echo './'`Kmer_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Kmer_AMOS.hh:13,
>                 from Kmer_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Kmer_AMOS.hh:13,
>                 from Kmer_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Layout_AMOS.o `test -f 'Layout_AMOS.cc' || echo './'`Layout_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Layout_AMOS.hh:13,
>                 from Layout_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Layout_AMOS.hh:13,
>                 from Layout_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Library_AMOS.o `test -f 'Library_AMOS.cc' || echo './'`Library_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Library_AMOS.hh:13,
>                 from Library_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Library_AMOS.hh:13,
>                 from Library_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Link_AMOS.o `test -f 'Link_AMOS.cc' || echo './'`Link_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Link_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Link_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Message_AMOS.o `test -f 'Message_AMOS.cc' || echo './'`Message_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Message_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Message_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Overlap_AMOS.o `test -f 'Overlap_AMOS.cc' || echo './'`Overlap_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Overlap_AMOS.hh:13,
>                 from Overlap_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Overlap_AMOS.hh:13,
>                 from Overlap_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Read_AMOS.o `test -f 'Read_AMOS.cc' || echo './'`Read_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Read_AMOS.hh:13,
>                 from Read_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Read_AMOS.hh:13,
>                 from Read_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-ScaffoldEdge_AMOS.o `test -f 'ScaffoldEdge_AMOS.cc' || echo './'`ScaffoldEdge_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ScaffoldEdge_AMOS.hh:13,
>                 from ScaffoldEdge_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ScaffoldEdge_AMOS.hh:13,
>                 from ScaffoldEdge_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-ScaffoldLink_AMOS.o `test -f 'ScaffoldLink_AMOS.cc' || echo './'`ScaffoldLink_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from ScaffoldLink_AMOS.hh:13,
>                 from ScaffoldLink_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from ScaffoldLink_AMOS.hh:13,
>                 from ScaffoldLink_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Scaffold_AMOS.o `test -f 'Scaffold_AMOS.cc' || echo './'`Scaffold_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Scaffold_AMOS.hh:13,
>                 from Scaffold_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Scaffold_AMOS.hh:13,
>                 from Scaffold_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Sequence_AMOS.o `test -f 'Sequence_AMOS.cc' || echo './'`Sequence_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Sequence_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Sequence_AMOS.hh:13,
>                 from Sequence_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-Universal_AMOS.o `test -f 'Universal_AMOS.cc' || echo './'`Universal_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Universal_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Universal_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-datatypes_AMOS.o `test -f 'datatypes_AMOS.cc' || echo './'`datatypes_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from datatypes_AMOS.hh:17,
>                 from datatypes_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from datatypes_AMOS.hh:17,
>                 from datatypes_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-universals_AMOS.o `test -f 'universals_AMOS.cc' || echo './'`universals_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from universals_AMOS.hh:13,
>                 from universals_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from Message_AMOS.hh:14,
>                 from Universal_AMOS.hh:13,
>                 from Link_AMOS.hh:13,
>                 from Edge_AMOS.hh:13,
>                 from ContigEdge_AMOS.hh:13,
>                 from universals_AMOS.hh:13,
>                 from universals_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..     -march=native -O2 -pipe -c -o libAMOS_a-utility_AMOS.o `test -f 'utility_AMOS.cc' || echo './'`utility_AMOS.cc
>In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ext/hash_map:60:0,
>                 from utility_AMOS.hh:48,
>                 from utility_AMOS.cc:10:
>/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp]
> #warning \
>  ^~~~~~~
>In file included from utility_AMOS.hh:13:0,
>                 from utility_AMOS.cc:10:
>inttypes_AMOS.hh: In function âstd::__cxx11::string AMOS::Decode(AMOS::NCode_t)â:
>inttypes_AMOS.hh:78:25: warning: narrowing conversion of â(ncode & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                         ^
>inttypes_AMOS.hh:78:55: warning: narrowing conversion of â((ncode >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>   char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX,
>                                                       ^
>inttypes_AMOS.hh:79:35: warning: narrowing conversion of â(((ncode >> 8) >> 8) & 127u)â from âAMOS::NCode_t {aka unsigned int}â to âcharâ inside { } [-Wnarrowing]
>     ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'};
>                                   ^
>utility_AMOS.cc: At global scope:
>utility_AMOS.cc:35:3: error: narrowing conversion of â128â from âintâ to âcharâ inside { } [-Wnarrowing]
>   };
>   ^
>utility_AMOS.cc:35:3: error: narrowing conversion of â129â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â130â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â131â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â132â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â133â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â134â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â135â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â136â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â137â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â138â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â139â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â140â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â141â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â142â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â143â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â144â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â145â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â146â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â147â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â148â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â149â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â150â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â151â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â152â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â153â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â154â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â155â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â156â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â157â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â158â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â159â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â160â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â161â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â162â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â163â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â164â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â165â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â166â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â167â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â168â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â169â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â170â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â171â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â172â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â173â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â174â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â175â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â176â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â177â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â178â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â179â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â180â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â181â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â182â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â183â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â184â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â185â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â186â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â187â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â188â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â189â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â190â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â191â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â192â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â193â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â194â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â195â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â196â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â197â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â198â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â199â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â200â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â201â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â202â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â203â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â204â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â205â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â206â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â207â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â208â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â209â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â210â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â211â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â212â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â213â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â214â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â215â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â216â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â217â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â218â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â219â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â220â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â221â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â222â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â223â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â224â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â225â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â226â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â227â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â228â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â229â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â230â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â231â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â232â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â233â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â234â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â235â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â236â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â237â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â238â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â239â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â240â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â241â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â242â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â243â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â244â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â245â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â246â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â247â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â248â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â249â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â250â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â251â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â252â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â253â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â254â from âintâ to âcharâ inside { } [-Wnarrowing]
>utility_AMOS.cc:35:3: error: narrowing conversion of â255â from âintâ to âcharâ inside { } [-Wnarrowing]
>make[3]: *** [Makefile:899: libAMOS_a-utility_AMOS.o] Error 1
>make[3]: Leaving directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src/AMOS'
>make[2]: *** [Makefile:325: all-recursive] Error 1
>make[2]: Leaving directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0/src'
>make[1]: *** [Makefile:306: all-recursive] Error 1
>make[1]: Leaving directory '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0'
>make: *** [Makefile:244: all] Error 2
> * ERROR: sci-biology/amos-3.1.0-r1::gentoo failed (compile phase):
> *   emake failed
> * 
> * If you need support, post the output of `emerge --info '=sci-biology/amos-3.1.0-r1::gentoo'`,
> * the complete build log and the output of `emerge -pqv '=sci-biology/amos-3.1.0-r1::gentoo'`.
> * The complete build log is located at '/var/log/portage/sci-biology:amos-3.1.0-r1:20160923-145247.log'.
> * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/amos-3.1.0-r1/temp/build.log'.
> * The ebuild environment file is located at '/var/tmp/portage/sci-biology/amos-3.1.0-r1/temp/environment'.
> * Working directory: '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0'
> * S: '/var/tmp/portage/sci-biology/amos-3.1.0-r1/work/amos-3.1.0'

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Attachments on bug 594928: 447602 | 447604 | 447606