sci-libs:libgenome-1.3-r1:20160919-122150.log

sci-libs:libgenome-1.3-r1:20160919-122150.log (text/plain), 28.31 KB, created by Toralf Förster on 2016-09-19 16:20:00 UTC

 * Package:    sci-libs/libgenome-1.3-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking libgenome-1.3-r1.tar.bz2 to /var/tmp/portage/sci-libs/libgenome-1.3-r1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/libgenome-1.3-r1/work
>>> Preparing source in /var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3 ...
 * Running eautoreconf in '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3' ...
 * Running libtoolize --install --copy --force --automake ...
 [ ok ]
 * Running aclocal -I m4 ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running autoheader ...
 [ ok ]
 * Running automake --add-missing --copy --foreign --force-missing ...
 [ ok ]
 * Running elibtoolize in: libgenome-1.3/
 * Running elibtoolize in: libgenome-1.3/config/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3 ...
 * econf: updating libgenome-1.3/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating libgenome-1.3/config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64
configure: loading site script /usr/share/config.site
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
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checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking for style of include used by make... GNU
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checking whether ln -s works... yes
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checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
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checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
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checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether ln -s works... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for ANSI C header files... (cached) yes
checking for x86_64-pc-linux-gnu-doxygen... no
checking for doxygen... no
configure: WARNING: doxygen not found - will not generate any doxygen documentation
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checking for inline... inline
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libGenome/Makefile
config.status: creating libGenome-1.3.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3 ...
make -j1 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3'
Making all in libGenome
make[2]: Entering directory '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3/libGenome'
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gnSourceFactory.cpp: In member function ‘boolean genome::gnSourceFactory::PathExists(std::__cxx11::string) const’:
gnSourceFactory.cpp:294:32: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result]
  getcwd( folder, FILENAME_MAX );
                                ^
gnSourceFactory.cpp:299:17: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result]
  chdir( folder );
                 ^
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/bin/sh ../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -I..     -march=native -O2 -pipe -MT gnDefs.lo -MD -MP -MF .deps/gnDefs.Tpo -c -o gnDefs.lo gnDefs.cpp
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gnDefs.cpp: In function ‘int64 abs(int64)’:
gnDefs.cpp:8:20: error: ‘int64 abs(int64)’ conflicts with a previous declaration
 int64 abs( int64 a ){
                    ^
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/stdlib.h:36:0,
                 from ../libGenome/gnSetup.h:19,
                 from ../libGenome/gnDefs.h:24,
                 from gnDefs.cpp:5:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/cstdlib:180:3: note: previous declaration ‘long long int std::abs(long long int)’
   abs(long long __x) { return __builtin_llabs (__x); }
   ^~~
make[2]: *** [Makefile:636: gnDefs.lo] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3/libGenome'
make[1]: *** [Makefile:530: all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3'
make: *** [Makefile:438: all] Error 2
emake failed
 * ERROR: sci-libs/libgenome-1.3-r1::gentoo failed (compile phase):
 *   emake failed
 * 
 * Call stack:
 *            ebuild.sh, line  115:  Called src_compile
 *          environment, line 1548:  Called default
 *   phase-functions.sh, line  805:  Called default_src_compile
 *   phase-functions.sh, line  842:  Called __eapi2_src_compile
 *     phase-helpers.sh, line  785:  Called die
 * The specific snippet of code:
 *   		emake || die "emake failed"
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/libgenome-1.3-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/libgenome-1.3-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:libgenome-1.3-r1:20160919-122150.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/libgenome-1.3-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/libgenome-1.3-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3'
 * S: '/var/tmp/portage/sci-libs/libgenome-1.3-r1/work/libgenome-1.3'