* Package:    sci-astronomy/casacore-2.1.0
 * Repository: gentoo
 * Maintainer: sci-astronomy@gentoo.org
 * USE:        abi_x86_64 amd64 data elibc_glibc kernel_linux openmp python_targets_python2_7 userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking casacore-2.1.0.tar.gz to /var/tmp/portage/sci-astronomy/casacore-2.1.0/work
>>> Source unpacked in /var/tmp/portage/sci-astronomy/casacore-2.1.0/work
>>> Preparing source in /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 ...
 * Applying casacore-disable-tpath-test.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build"
cmake -C /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_SHARED=ON -DPYTHON_EXECUTABLE= -DDATA_DIR=/usr/share/casa/data -DBUILD_PYTHON=no -DBUILD_TESTING=no -DCXX11=no -DUSE_FFTW3=no -DUSE_HDF5=no -DUSE_OPENMP=yes -DUSE_THREADS=no -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0
loading initial cache file /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 6.2.0
-- The CXX compiler identification is GNU 6.2.0
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 6.2.0
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran
-- Check for working Fortran compiler: /usr/bin/x86_64-pc-linux-gnu-gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90
-- Checking whether /usr/bin/x86_64-pc-linux-gnu-gfortran supports Fortran 90 -- yes
-- Performing Test HAS_GXX_FORTRAN_RULES
-- Performing Test HAS_GXX_FORTRAN_RULES - Success
-- Performing Test HAS_GCC_FORTRAN_RULES
-- Performing Test HAS_GCC_FORTRAN_RULES - Success
-- Looking for pread
-- Looking for pread - found
-- Looking for pwrite
-- Looking for pwrite - found
-- Found Readline: /usr/lib64/libreadline.so  
-- Could NOT find SOFA (missing:  SOFA_LIBRARY) 
-- Found FLEX: /usr/bin/flex  
-- Found BISON: /usr/bin/bison  
-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "0.29.1") 
-- Checking for module 'blas'
--   Found blas, version 20070226
-- Found BLAS: /usr/lib64/blas/reference/libblas.so  
-- Checking for module 'lapack'
--   Found lapack, version 3.2.1
-- Found LAPACK: /usr/lib64/lapack/reference/liblapack.so;/usr/lib64/blas/reference/libblas.so  
-- Found CFITSIO: /usr/lib64/libcfitsio.so (found suitable version "3.360", minimum required is "3.030") 
-- Found WCSLIB: /usr/lib64/libwcs.so (found suitable version "5.15", minimum required is "4.7") 
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP Fortran flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp  
-- Found Pthreads: /usr/lib64/libpthread.so  
-- CMAKE_SYSTEM .......... = Linux-4.7.4-hardened
-- CMAKE_BUILD_TYPE ...... = Gentoo
-- Modules to be built ... = casa;tables;scimath_f;scimath;measures;meas;lattices;fits;ms;derivedmscal;msfits;mirlib;coordinates;images
-- BUILD_SHARED_LIBS ..... = ON
-- ENABLE_RPATH .......... = ON
-- ENABLE_TABLELOCKING ... = ON
-- USE_OPENMP ............ = yes
-- USE_STACKTRACE ........ = OFF
-- CMAKE_CXX_COMPILER .... = /usr/bin/x86_64-pc-linux-gnu-g++
-- CMAKE_CXX_FLAGS ....... = -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread
-- C++11 support ......... = no
-- DATA directory ........ = /usr/share/casa/data
-- DL library? ........... = /usr/lib64/libdl.so
-- Pthreads library? ..... = /usr/lib64/libpthread.so
-- Readline library? ..... = /usr/lib64/libreadline.so;/usr/lib64/libncurses.so
-- BLAS library? ......... = /usr/lib64/blas/reference/libblas.so
-- LAPACK library? ....... = /usr/lib64/lapack/reference/liblapack.so;/usr/lib64/blas/reference/libblas.so
-- WCS library? .......... = /usr/lib64/libwcs.so;/usr/lib64/libm.so
-- SOFA library? ......... = SOFA_LIBRARY-NOTFOUND
-- CFitsio library? ...... = /usr/lib64/libcfitsio.so;/usr/lib64/libm.so
-- HDF5 library? ......... = 
-- FFTW3 library? ........ = 
-- BUILD_PYTHON .......... = no
-- BUILD_PYTHON3 .......... = OFF
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread
C++             -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread
Linker flags:
Executable       -Wl,-O1 -Wl,--as-needed
Module           -Wl,-O1 -Wl,--as-needed
Shared           -Wl,-O1 -Wl,--as-needed

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    PYTHON_EXECUTABLE


-- Build files have been written to: /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build"
make -j1 VERBOSE=1 
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/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/CMakeFiles /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build'
make -f casa/CMakeFiles/casa_casa.dir/build.make casa/CMakeFiles/casa_casa.dir/depend
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cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa/CMakeFiles/casa_casa.dir/DependInfo.cmake
Dependee "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa/CMakeFiles/casa_casa.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa/CMakeFiles/casa_casa.dir/depend.internal".
Dependee "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa/CMakeFiles/casa_casa.dir/depend.internal".
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cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/IPosition.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/IPosition.cc
[  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/IPosition2.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/IPosition2.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/IPosition2.cc
[  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/MaskArrMath2.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/MaskArrMath2.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/MaskArrMath2.cc
[  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Matrix2Math.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/Matrix2Math.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/Matrix2Math.cc
[  1%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Slice.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/Slice.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/Slice.cc
[  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Slicer.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/Slicer.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/Slicer.cc
[  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/Arrays/Vector_tmpl.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/Arrays/Vector_tmpl.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/Arrays/Vector_tmpl.cc
[  2%] Building CXX object casa/CMakeFiles/casa_casa.dir/BasicMath/Math.cc.o
cd /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build/casa && /usr/bin/x86_64-pc-linux-gnu-g++  -DCFITSIO_VERSION_MAJOR=3 -DCFITSIO_VERSION_MINOR=360 -DHAVE_READLINE -DUSE_THREADS -DWCSLIB_VERSION_MAJOR=5 -DWCSLIB_VERSION_MINOR=15 -Dcasa_casa_EXPORTS -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0 -I/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build   -DNDEBUG -fcx-fortran-rules -march=native -O2 -pipe  -fopenmp -pthread -fPIC   -o CMakeFiles/casa_casa.dir/BasicMath/Math.cc.o -c /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc: In function ‘casa::Bool casa::isInf(casa::Float)’:
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:181:28: error: ‘isinf’ was not declared in this scope
   return (isinf(Double(val)));
                            ^
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:181:28: note: suggested alternative:
In file included from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casacore/casa/math.h:52:0,
                 from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casacore/casa/BasicMath/Math.h:33,
                 from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:28:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/cmath:630:5: note:   ‘std::isinf’
     isinf(_Tp __x)
     ^~~~~
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc: In function ‘casa::Bool casa::isInf(casa::Double)’:
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:215:28: error: ‘isinf’ was not declared in this scope
   return (isinf(Double(val)));
                            ^
/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:215:28: note: suggested alternative:
In file included from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casacore/casa/math.h:52:0,
                 from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casacore/casa/BasicMath/Math.h:33,
                 from /var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0/casa/BasicMath/Math.cc:28:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/cmath:630:5: note:   ‘std::isinf’
     isinf(_Tp __x)
     ^~~~~
make[2]: *** [casa/CMakeFiles/casa_casa.dir/build.make:495: casa/CMakeFiles/casa_casa.dir/BasicMath/Math.cc.o] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build'
make[1]: *** [CMakeFiles/Makefile2:106: casa/CMakeFiles/casa_casa.dir/all] Error 2
make[1]: Leaving directory '/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build'
make: *** [Makefile:150: all] Error 2
 * ERROR: sci-astronomy/casacore-2.1.0::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-astronomy/casacore-2.1.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-astronomy/casacore-2.1.0::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-astronomy:casacore-2.1.0:20160918-063829.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-astronomy/casacore-2.1.0/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-astronomy/casacore-2.1.0/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0_build'
 * S: '/var/tmp/portage/sci-astronomy/casacore-2.1.0/work/casacore-2.1.0'