sci-biology:prank-140603:20160917-054845.log

sci-biology:prank-140603:20160917-054845.log (text/plain), 28.16 KB, created by Toralf Förster on 2016-09-17 08:45:20 UTC

 * Package:    sci-biology/prank-140603
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking prank.source.140603.tgz to /var/tmp/portage/sci-biology/prank-140603/work
>>> Source unpacked in /var/tmp/portage/sci-biology/prank-140603/work
>>> Preparing source in /var/tmp/portage/sci-biology/prank-140603/work/prank-msa/src ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/prank-140603/work/prank-msa/src ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/prank-140603/work/prank-msa/src ...
make -j1 LINK=x86_64-pc-linux-gnu-g++ CXX=x86_64-pc-linux-gnu-g++ 'CFLAGS=-march=native -O2 -pipe' 'CXXFLAGS=-march=native -O2 -pipe' 
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o writefile.o writefile.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o treenode.o treenode.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o translatesequences.o translatesequences.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o terminalsequence.o terminalsequence.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o terminalnode.o terminalnode.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o site.o site.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o sequence.o sequence.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o readnewick.o readnewick.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o readfile.o readfile.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o readalignment.o readalignment.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o pwsite.o pwsite.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o pwhirschberg.o pwhirschberg.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o progressivealignment.o progressivealignment.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o prank.o prank.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o postprobability.o postprobability.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o phylomatchscore.o phylomatchscore.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o node.o node.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o intmatrix.o intmatrix.cpp
x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -I. -I/usr/include -o hmmodel.o hmmodel.cpp
hmmodel.cpp: In member function ‘void HMModel::alignmentModel(AncestralNode*)’:
hmmodel.cpp:1502:57: error: no match for ‘operator<<’ (operand types are ‘std::basic_ostream<char>’ and ‘std::ostream {aka std::basic_ostream<char>}’)
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
hmmodel.cpp:1502:57: note: candidate: operator<<(int, int) <built-in>
hmmodel.cpp:1502:57: note:   no known conversion for argument 2 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘int’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:108:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, _Traits>::__ostream_type& (*)(std::basic_ostream<_CharT, _Traits>::__ostream_type&)) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(__ostream_type& (*__pf)(__ostream_type&))
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:108:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘std::basic_ostream<char>::__ostream_type& (*)(std::basic_ostream<char>::__ostream_type&) {aka std::basic_ostream<char>& (*)(std::basic_ostream<char>&)}’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:117:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, _Traits>::__ios_type& (*)(std::basic_ostream<_CharT, _Traits>::__ios_type&)) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>; std::basic_ostream<_CharT, _Traits>::__ios_type = std::basic_ios<char>]
       operator<<(__ios_type& (*__pf)(__ios_type&))
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:117:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘std::basic_ostream<char>::__ios_type& (*)(std::basic_ostream<char>::__ios_type&) {aka std::basic_ios<char>& (*)(std::basic_ios<char>&)}’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:127:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(std::ios_base& (*)(std::ios_base&)) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(ios_base& (*__pf) (ios_base&))
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:127:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘std::ios_base& (*)(std::ios_base&)’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:166:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(long __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:166:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘long int’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:170:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(unsigned long __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:170:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘long unsigned int’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:174:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(bool __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:174:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘bool’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:638:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:91:5: note: candidate: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(short int) [with _CharT = char; _Traits = std::char_traits<char>]
     basic_ostream<_CharT, _Traits>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:91:5: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘short int’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:181:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(short unsigned int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(unsigned short __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:181:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘short unsigned int’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:638:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:105:5: note: candidate: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(int) [with _CharT = char; _Traits = std::char_traits<char>]
     basic_ostream<_CharT, _Traits>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:105:5: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘int’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:192:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(unsigned int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(unsigned int __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:192:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘unsigned int’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:201:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(long long __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:201:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘long long int’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:205:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long long unsigned int) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(unsigned long long __n)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:205:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘long long unsigned int’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:220:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(double __f)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:220:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘double’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:224:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(float) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(float __f)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:224:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘float’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:232:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(long double) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(long double __f)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:232:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘long double’
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:245:7: note: candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(const void*) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__ostream_type = std::basic_ostream<char>]
       operator<<(const void* __p)
       ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:245:7: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘const void*’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:638:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:119:5: note: candidate: std::basic_ostream<_CharT, _Traits>& std::basic_ostream<_CharT, _Traits>::operator<<(std::basic_ostream<_CharT, _Traits>::__streambuf_type*) [with _CharT = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, _Traits>::__streambuf_type = std::basic_streambuf<char>]
     basic_ostream<_CharT, _Traits>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:119:5: note:   no known conversion for argument 1 from ‘std::ostream {aka std::basic_ostream<char>}’ to ‘std::basic_ostream<char>::__streambuf_type* {aka std::basic_streambuf<char>*}’
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/string:52:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/locale_classes.h:40,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ios_base.h:41,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/basic_string.h:5325:5: note: candidate: template<class _CharT, class _Traits, class _Alloc> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&)
     operator<<(basic_ostream<_CharT, _Traits>& __os,
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/basic_string.h:5325:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   ‘std::ostream {aka std::basic_ostream<char>}’ is not derived from ‘const std::__cxx11::basic_string<_CharT, _Traits, _Alloc>’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ios_base.h:46:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ios:42,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:38,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/system_error:209:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const std::error_code&)
     operator<<(basic_ostream<_CharT, _Traits>& __os, const error_code& __e)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/system_error:209:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘const std::error_code&’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:497:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, _CharT)
     operator<<(basic_ostream<_CharT, _Traits>& __out, _CharT __c)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:497:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   deduced conflicting types for parameter ‘_CharT’ (‘char’ and ‘std::basic_ostream<char>’)
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:502:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, char)
     operator<<(basic_ostream<_CharT, _Traits>& __out, char __c)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:502:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘char’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:508:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, char)
     operator<<(basic_ostream<char, _Traits>& __out, char __c)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:508:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘char’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:514:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, signed char)
     operator<<(basic_ostream<char, _Traits>& __out, signed char __c)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:514:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘signed char’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:519:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, unsigned char)
     operator<<(basic_ostream<char, _Traits>& __out, unsigned char __c)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:519:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘unsigned char’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:539:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const _CharT*)
     operator<<(basic_ostream<_CharT, _Traits>& __out, const _CharT* __s)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:539:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   mismatched types ‘const _CharT*’ and ‘std::basic_ostream<char>’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:638:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:321:5: note: candidate: template<class _CharT, class _Traits> std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&, const char*)
     operator<<(basic_ostream<_CharT, _Traits>& __out, const char* __s)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/bits/ostream.tcc:321:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘const char*’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:556:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, const char*)
     operator<<(basic_ostream<char, _Traits>& __out, const char* __s)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:556:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘const char*’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:569:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, const signed char*)
     operator<<(basic_ostream<char, _Traits>& __out, const signed char* __s)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:569:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘const signed char*’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:574:5: note: candidate: template<class _Traits> std::basic_ostream<char, _Traits>& std::operator<<(std::basic_ostream<char, _Traits>&, const unsigned char*)
     operator<<(basic_ostream<char, _Traits>& __out, const unsigned char* __s)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:574:5: note:   template argument deduction/substitution failed:
hmmodel.cpp:1502:59: note:   cannot convert ‘std::cout’ (type ‘std::ostream {aka std::basic_ostream<char>}’) to type ‘const unsigned char*’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
                                                           ^~~~
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/istream:39:0,
                 from /usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/fstream:38,
                 from hmmodel.cpp:24:
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:628:5: note: candidate: std::basic_ostream<_CharT, _Traits>& std::operator<<(std::basic_ostream<_CharT, _Traits>&&, const _Tp&) [with _CharT = char; _Traits = std::char_traits<char>; _Tp = std::basic_ostream<char>] <near match>
     operator<<(basic_ostream<_CharT, _Traits>&& __os, const _Tp& __x)
     ^~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6/ostream:628:5: note:   conversion of argument 1 would be ill-formed:
hmmodel.cpp:1502:13: error: cannot bind ‘std::basic_ostream<char>’ lvalue to ‘std::basic_ostream<char>&&’
         cout<<"HMModel::alignmentModel: impossible 'as'"<<cout;
         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make: *** [Makefile:406: hmmodel.o] Error 1
 * ERROR: sci-biology/prank-140603::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/prank-140603::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/prank-140603::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:prank-140603:20160917-054845.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/prank-140603/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/prank-140603/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/prank-140603/work/prank-msa/src'
 * S: '/var/tmp/portage/sci-biology/prank-140603/work/prank-msa/src'