--- ncbi-tools-2.2.26-r2.ebuild.old	2016-06-24 21:56:10.701670119 +0200
+++ ncbi-tools-2.2.26-r2.ebuild	2016-06-24 22:28:43.074164075 +0200
@@ -90,6 +90,10 @@
 		-re "s:/usr(/bin/.*sh):\1:g" \
 		-e "s:(/bin/.*sh):${EPREFIX}\1:g" \
 		-i $(find "${S}" -type f) || die
+
+	# undo the /scratch/mmokrejs/gentoo/scratch/mmokrejs/gentoo/bin/sh
+	# make CFLAGS1="-DNDEBUG -O2 -pipe -O2 -pipe -march=native -c " LDFLAGS1="-O2 -pipe -O2 -pipe -march=native -Wl,-O1" OTHERLIBS="-lm" SHELL="/scratch/mmokrejs/gentoo/scratch/mmokrejs/gentoo/bin/sh" LCL="lnx" RAN="x86_64-pc-linux-gnu-ranlib" AR="x86_64-pc-linux-gnu-ar" CC="x86_64-pc-linux-gnu-gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_GNU_SOURCE" all
+	sed -e "s#${EPREFIX}${EPREFIX}#${EPREFIX}#" -i * || die
 }
 
 src_compile() {