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Gentoo's Bugzilla – Attachment 433644 Details for
Bug 575686
sci-physics/root-6.04.06 (with gsl-2.1) - GSLMultiFit.h:157:45: error: ‘struct gsl_multifit_fdfsolver’ has no member named ‘J’
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An ebuild using the gsl-2 patch
root-6.04.06.ebuild (text/plain), 14.50 KB, created by
Juergen Rose
on 2016-05-08 12:08:08 UTC
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Description:
An ebuild using the gsl-2 patch
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2016-05-08 12:08:08 UTC
Size:
14.50 KB
patch
obsolete
># Copyright 1999-2016 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Id$ > >EAPI=5 > >PYTHON_COMPAT=( python2_7 ) > >inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \ > toolchain-funcs user versionator > >DESCRIPTION="C++ data analysis framework and interpreter from CERN" >HOMEPAGE="https://root.cern.ch" >SRC_URI="https://root.cern.ch/download/${PN}_v${PV}.source.tar.gz" > >SLOT="0/$(get_version_component_range 1-3 ${PV})" >LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" >KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" >IUSE="+X afs avahi doc emacs examples fits fftw gdml geocad > graphviz http kerberos ldap +math +memstat mpi mysql odbc > +opengl openmp oracle postgres prefix pythia6 pythia8 > python qt4 R shadow sqlite ssl table +tiff xinetd xml xrootd" > ># TODO: add support for: davix ># TODO: ROOT-6 supports x32 ABI, but half of its dependencies doesn't ># TODO: unbundle: cling, vdt > >REQUIRED_USE=" > !X? ( !opengl !qt4 !tiff ) > mpi? ( math !openmp ) > openmp? ( math !mpi ) > python? ( ${PYTHON_REQUIRED_USE} ) >" > >CDEPEND=" > app-arch/xz-utils:0= > >=dev-lang/cfortran-4.4-r2 > dev-libs/libpcre:3= > media-fonts/dejavu > media-libs/freetype:2= > media-libs/libpng:0= > >=sys-devel/clang-3.4:= > sys-libs/ncurses:= > sys-libs/zlib:0= > X? ( > media-libs/ftgl:0= > media-libs/glew:0= > x11-libs/libX11:0= > x11-libs/libXext:0= > x11-libs/libXpm:0= > || ( > media-libs/libafterimage:0=[gif,jpeg,png,tiff?] > >=x11-wm/afterstep-2.2.11:0=[gif,jpeg,png,tiff?] > ) > opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= ) > qt4? ( > dev-qt/qtgui:4= > dev-qt/qtopengl:4= > dev-qt/qt3support:4= > dev-qt/qtsvg:4= > dev-qt/qtwebkit:4= > dev-qt/qtxmlpatterns:4= > ) > x11-libs/libXft:0= > ) > afs? ( net-fs/openafs ) > avahi? ( net-dns/avahi:0= ) > emacs? ( virtual/emacs ) > fits? ( sci-libs/cfitsio:0= ) > fftw? ( sci-libs/fftw:3.0= ) > geocad? ( <sci-libs/opencascade-6.8.0:= ) > graphviz? ( media-gfx/graphviz:0= ) > http? ( dev-libs/fcgi:0= ) > kerberos? ( virtual/krb5 ) > ldap? ( net-nds/openldap:0= ) > math? ( > sci-libs/gsl:0= > sci-mathematics/unuran:0= > mpi? ( virtual/mpi ) > ) > mysql? ( virtual/mysql ) > odbc? ( || ( dev-db/libiodbc:0= dev-db/unixODBC:0= ) ) > oracle? ( dev-db/oracle-instantclient-basic:0= ) > postgres? ( dev-db/postgresql:= ) > pythia6? ( sci-physics/pythia:6= ) > pythia8? ( >=sci-physics/pythia-8.1.80:8= ) > python? ( ${PYTHON_DEPS} ) > R? ( dev-lang/R ) > shadow? ( virtual/shadow ) > sqlite? ( dev-db/sqlite:3= ) > ssl? ( dev-libs/openssl:0= ) > xml? ( dev-libs/libxml2:2= ) > xrootd? ( >=net-libs/xrootd-3.3.5:0= ) >" > ># TODO: ruby is not yet ported to ROOT-6, reenable when (if?) ready ># ruby? ( ># dev-lang/ruby:= ># dev-ruby/rubygems:= ># ) > >DEPEND="${CDEPEND} > virtual/pkgconfig" > >RDEPEND="${CDEPEND} > xinetd? ( sys-apps/xinetd )" > >PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )" > ># install stuff in ${P} and not ${PF} for easier tracking in root-docs >DOC_DIR="/usr/share/doc/${P}" > >OC_UNSUPPORTED="6.8.0" > >die_compiler() { > eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities" > die "Need one of the following C++$1 capable compilers:\n"\ > " >=sys-devel/gcc[cxx]-$2\n"\ > " >=sys-devel/clang-$3\n"\ > " >=dev-lang/icc-$4" >} > ># check compiler to satisfy minimal versions ># $1 - std version ># $2 - g++ ># $3 - clang++ ># $4 - icc/icpc >check_compiler() { > local cur ver > case "$(tc-getCXX)" in > *clang++*) > ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')" > cur="$3" > ;; > *g++*) > ver="$(gcc-version)" > if version_is_at_least "5" "${ver}"; then > eerror "" > eerror "GCC-5 is not yet supported in ROOT-6." > eerror "The code may build for you, but will have run-time failures." > eerror "See the following bugs:" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7285" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7319" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7654" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7721" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7818" > eerror "https://sft.its.cern.ch/jira/browse/ROOT-7895" > eerror "https://bugs.gentoo.org/show_bug.cgi?id=564306" > eerror "" > eerror "Please use GCC-4.9 for now." > eerror "" > die "gcc-5 is not yet supported" > fi > cur="$2" > ;; > *icc*|*icpc*) > ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')" > eerror "ROOT-6 is known not to build with ICC." > eerror "Please report any isuses upstream." > cur="$4" > ;; > *) > ewarn "You are using an unsupported compiler." > ewarn "Please report any issues upstream." > return 0 > ;; > esac > version_is_at_least "${cur}" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}" >} > >pkg_setup() { > fortran-2_pkg_setup > use python && python-single-r1_pkg_setup > echo > elog "There are extra options on packages not yet in Gentoo:" > elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," > elog "HDFS, Monalisa, MaxDB/SapDB, SRP." > elog "You can use the env variable EXTRA_ECONF variable for this." > elog "For example, for SRP, you would set: " > elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\"" > echo > > enewgroup rootd > enewuser rootd -1 -1 /var/spool/rootd rootd > > if use math; then > if use openmp; then > if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then > ewarn "You are using a g++ without OpenMP capabilities" > die "Need an OpenMP capable compiler" > else > export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1 > fi > elif use mpi; then > export USE_MPI=1 USE_PARALLEL_MINUIT2=1 > fi > fi > > # c++11 support is mandatory > check_compiler "11" "4.8" "3.4" "13" > > # Active version of opencascade may be >= $OC_UNSUPPORTED, > # so we need to eselect proper version (it must exist due to DEPEND requirement) > if use geocad; then > oc_current=$(eselect opencascade show) > # Proceed only if active version is unsupported > if version_is_at_least "${OC_UNSUPPORTED}" "${oc_current}"; then > local -a vlist > vlist=( $(version_sort $(eselect opencascade list | awk '/^ / { print $2 }')) ) > local i > # search for higehr version < $OC_UNSUPPORTED > # list is sorted acsending, so loop backwards > for (( i=$(( ${#vlist[@]} -1 )); i>=0; i-- )); do > version_is_at_least "${OC_UNSUPPORTED}" "${vlist[i]}" || break > done > [[ $i == "-1" ]] && die "No suitable opencascade eselect slot is available (<${OC_UNSUPPORTED})" > > einfo "Switching opencascade to supported slot: ${oc_current} -> ${vlist[i]}" > eselect opencascade set ${vlist[i]} > /dev/null || die "eselect opencascade set ${vlist[i]} failed!" > else > # forget it, effectively disabling eselect cleanup > unset oc_current > fi > fi >} > >src_prepare() { > # Second version of makepch is required in order to generate > # PCH file appropriate for Gentoo include headers layout. > # This can be done only at install stage, when files are placed > # as appropriate. Premature modification of makepch.sh will > # broke build process, however. > #cp "etc/dictpch/makepch.sh" "etc/dictpch/makepch-gentoo.sh" || die > > epatch \ > "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ > "${FILESDIR}"/${PN}-5.32.00-afs.patch \ > "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ > "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ > "${FILESDIR}"/${PN}-5.34.13-unuran.patch \ > "${FILESDIR}"/${PN}-6.00.01-dotfont.patch \ > "${FILESDIR}"/${PN}-6.00.01-llvm.patch \ > "${FILESDIR}"/${PN}-6.00.01-nobyte-compile.patch \ > "${FILESDIR}"/${P}-prop-flags.patch \ > "${FILESDIR}"/${P}_gsl-2.patch > # "${FILESDIR}"/${PN}-6.02.05-xrootd4.patch > # "${FILESDIR}"/${PN}-6.02.05-dictpch.patch \ > > # make sure we use system libs and headers > rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die > rm -r graf2d/asimage/src/libAfterImage || die > rm -r graf3d/ftgl/{inc,src} || die > rm -r graf2d/freetype/src || die > rm -r graf3d/glew/{inc,src} || die > rm -r core/pcre/src || die > rm -r math/unuran/src/unuran-*.tar.gz || die > LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \ > xargs -0 rm || die > rm -r core/lzma/src/*.tar.gz || die > rm graf3d/gl/{inc,src}/gl2ps.* || die > sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \ > graf3d/gl/Module.mk || die > > # In Gentoo, libPythia6 is called libpythia6 > # iodbc is in /usr/include/iodbc > # pg_config.h is checked instead of libpq-fe.h > sed -i \ > -e 's:libPythia6:libpythia6:g' \ > -e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \ > -e 's:libpq-fe.h:pg_config.h:' \ > configure || die "adjusting configure for Gentoo failed" > > # prefixify the configure script > sed -i \ > -e 's:/usr:${EPREFIX}/usr:g' \ > configure || die "prefixify configure failed" > > # CSS should use local images > sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" > > # QTDIR only used for qt3 in gentoo, and configure looks for it. > unset QTDIR >} > ># NB: ROOT uses bundled LLVM, because it is patched and API-incompatible with ># system LLVM. ># NB: As of 6.00.0.1 cmake is not ready as it can't fully replace configure, ># e.g. for afs and geocad. > >src_configure() { > local -a myconf > # Some compilers need special care > case "$(tc-getCXX)" in > *clang++*) > myconf=( > --with-clang > --with-f77="$(tc-getFC)" > ) > ;; > *icc*|*icpc*) > # For icc we need to provide architecture manually > # and not to tamper with tc-get* > use x86 && myconf=( linuxicc ) > use amd64 && myconf=( linuxx8664icc ) > ;; > *) # gcc goes here too > myconf=( > --with-cc="$(tc-getCC)" > --with-cxx="$(tc-getCXX)" > --with-f77="$(tc-getFC)" > --with-ld="$(tc-getCXX)" > ) > ;; > esac > > # the configure script is not the standard autotools > myconf+=( > --prefix="${EPREFIX}/usr" > --etcdir="${EPREFIX}/etc/root" > --libdir="${EPREFIX}/usr/$(get_libdir)/${PN}" > --docdir="${EPREFIX}${DOC_DIR}" > --tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials" > --testdir="${EPREFIX}${DOC_DIR}/examples/tests" > --disable-builtin-afterimage > --disable-builtin-ftgl > --disable-builtin-freetype > --disable-builtin-glew > --disable-builtin-lzma > --disable-builtin-pcre > --disable-builtin-zlib > --disable-werror > --enable-explicitlink > --enable-shared > --enable-soversion > --fail-on-missing > --nohowto > --with-afs-shared=yes > --with-sys-iconpath="${EPREFIX}/usr/share/pixmaps" > # Invalid option '-mtune=native'. Try ./configure --help > # --cflags=\"${CFLAGS}\" > # --cxxflags=\"${CXXFLAGS}\" > $(use_enable X x11) > $(use_enable X asimage) > $(use_enable X xft) > $(use_enable afs) > $(use_enable avahi bonjour) > $(use_enable fits fitsio) > $(use_enable fftw fftw3) > $(use_enable gdml) > $(use_enable geocad) > $(use_enable graphviz gviz) > $(use_enable http) > $(use_enable kerberos krb5) > $(use_enable ldap) > $(use_enable math genvector) > $(use_enable math gsl-shared) > $(use_enable math mathmore) > $(use_enable math minuit2) > $(use_enable math roofit) > $(use_enable math tmva) > $(use_enable math vc) > $(use_enable math vdt) > $(use_enable math unuran) > $(use_enable memstat) > $(use_enable mysql) > $(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "") > $(use_enable odbc) > $(use_enable opengl) > $(use_enable oracle) > $(use_enable postgres pgsql) > $(use_enable prefix rpath) > $(use_enable pythia6) > $(use_enable pythia8) > $(use_enable python) > $(use_enable qt4 qt) > $(use_enable qt4 qtgsi) > $(use_enable R r) > $(use_enable shadow shadowpw) > $(use_enable sqlite) > $(use_enable ssl) > $(use_enable table) > $(use_enable tiff astiff) > $(use_enable xml) > $(use_enable xrootd) > ${EXTRA_ECONF} > ) > > # usex can't be used here, because pg_config may be not > # installed with USE="-postgres" > use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) ) > > einfo "Configuring with ${myconf[@]}" > ./configure ${myconf[@]} || die "configure failed" >} > >src_compile() { > emake \ > OPT="${CXXFLAGS}" \ > F77OPT="${FFLAGS}" \ > ROOTSYS="${S}" \ > LD_LIBRARY_PATH="${S}/lib" > use emacs && elisp-compile build/misc/*.el >} > >daemon_install() { > local daemons="rootd proofd" > dodir /var/spool/rootd > fowners rootd:rootd /var/spool/rootd > dodir /var/spool/rootd/{pub,tmp} > fperms 1777 /var/spool/rootd/{pub,tmp} > > local i > for i in ${daemons}; do > newinitd "${FILESDIR}"/${i}.initd ${i} > newconfd "${FILESDIR}"/${i}.confd ${i} > done > if use xinetd; then > insinto /etc/xinetd > doins "${S}"/etc/daemons/{rootd,proofd}.xinetd > fi >} > >desktop_install() { > cd "${S}" > echo "Icon=root-system-bin" >> etc/root.desktop > domenu etc/root.desktop > doicon build/package/debian/root-system-bin.png > > insinto /usr/share/icons/hicolor/48x48/mimetypes > doins build/package/debian/application-x-root.png > > insinto /usr/share/icons/hicolor/48x48/apps > doicon build/package/debian/root-system-bin.xpm >} > >cleanup_install() { > # Cleanup of files either already distributed or unused on Gentoo > pushd "${ED}" > /dev/null > rm usr/share/root/fonts/LICENSE || die > rm etc/root/proof/*.sample || die > rm -r etc/root/daemons || die > # these should be in PATH > mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die > rm ${DOC_DIR#/}/INSTALL || die > use examples || rm -r ${DOC_DIR#/}/examples || die > > # clean hardcoded sandbox paths > #rm etc/root/dictpch/allCppflags.txt.tmp || die > #sed -i "s|${S}/||" etc/root/cling/llvm/Config/llvm-config.h || die > # regenerate pch for Gentoo headers layout > #rm "etc/root/allDict.cxx.pch" || die > #sed -i 's|etc/dictpch|etc/root/dictpch|' etc/root/dictpch/allLinkDefs.h || die > #sed -i 's|etc/cling|etc/root/cling|' etc/root/dictpch/allHeaders.h || die > #sed -i "s|ROOTDIR_TEMPLATE|${ED}|" etc/root/dictpch/makepch-gentoo.sh || die > #etc/root/dictpch/makepch-gentoo.sh etc/root/allDict.cxx.pch || die "PCH generation failed" >} > >src_install() { > ROOTSYS="${S}" emake DESTDIR="${D}" install > insinto "${DOC_DIR}" > doins README.md > > echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root > use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root > > if use python; then > echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root > python_optimize "${D}/usr/$(get_libdir)/root" > fi > use emacs && elisp-install ${PN} build/misc/*.{el,elc} > doenvd 99root > > # The build system installs Emacs support unconditionally in the wrong > # directory. Remove it and call elisp-install in case of USE=emacs. > rm -r "${ED}"/usr/share/emacs || die > > daemon_install > desktop_install > cleanup_install > > # do not copress files used by ROOT's CLI (.credit, .demo, .license) > docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials} >} > >pkg_postinst() { > fdo-mime_desktop_database_update > > # restort opencascade eselect slot > if use geocad && [[ -n ${oc_current} ]]; then > einfo "Switching to user set slot: $(eselect opencascade show) -> ${oc_current}" > eselect opencascade set ${oc_current} > /dev/null || eerror "eselect opencascade set ${vlist[i]} failed!" > unset oc_current > fi >} > >pkg_postrm() { > fdo-mime_desktop_database_update >}
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bug 575686
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