* Package: sci-mathematics/cgal-4.3-r1 * Repository: gentoo * Maintainer: sci-mathematics@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc gmp kernel_linux userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking CGAL-4.3.tar.xz to /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work >>> Source unpacked in /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work >>> Preparing source in /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3 ... * Applying cgal-4.3-cmake-3.3.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3 ... removed ‘/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3/cmake/modules/FindBLAS.cmake’ removed ‘/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3/cmake/modules/FindLAPACK.cmake’ >>> Working in BUILD_DIR: "/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build" cmake --no-warn-unused-cli -C /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DCGAL_INSTALL_LIB_DIR=lib64 -DWITH_CGAL_Qt3=OFF -DWITH_LEDA=OFF -DWITH_gmp=ON -DWITH_GMP=ON -DWITH_Gmp=ON -DWITH_GMPXX=ON -DWITH_CGAL_Qt4=OFF -DWITH_mpfi=OFF -DWITH_MPFI=OFF -DWITH_Mpfi=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build/gentoo_toolchain.cmake /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3 Not searching for unused variables given on the command line. loading initial cache file /var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build/gentoo_common_config.cmake -- The CXX compiler identification is GNU 4.9.3 -- The C compiler identification is GNU 4.9.3 -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done == Setting paths == -- Build CGAL from release in directory CGAL-4.3 -- Packagenames: CGAL-4.3 == Setting paths (DONE) == == Generate version files == -- CGAL_MAJOR_VERSION=4 -- CGAL_MINOR_VERSION=3 -- CGAL_BUGFIX_VERSION=0 -- CGAL_SONAME_VERSION=10 -- CGAL_SOVERSION =10.0.2 -- CGAL_REFERENCE_CACHE_DIR= -- Building shared libraries -- Targetting Unix Makefiles -- Using /usr/bin/x86_64-pc-linux-gnu-g++ compiler. -- USING CMake version: 3.3.1 -- System: Linux -- USING GCC_VERSION = '4.9.3' -- Using gcc version 4 or later. Adding -frounding-math == Generate version files (DONE) == == Set up flags == -- Build type: Release -- USING CXXFLAGS = '-march=native -O2 -pipe -frounding-math -O3 -DNDEBUG' -- USING LDFLAGS = ' -Wl,-O1 -Wl,--as-needed ' == Set up flags (DONE) == == Detect external libraries == -- External libraries supported: GMP;GMPXX;MPFR;ZLIB;OpenGL;LEDA;MPFI;RS;RS3;OpenNL;TAUCS;Eigen3;BLAS;LAPACK;QGLViewer;ESBTL;Coin3D;NTL;IPE -- Preconfiguring library: GMP ... -- Found GMP: /usr/lib64/libgmp.so -- GMP has been preconfigured: -- UseGMP-file: -- GMP include: /usr/include -- GMP libraries: /usr/lib64/libgmp.so -- GMP definitions: -- USING GMP_VERSION = '6.0.0' -- Preconfiguring library: GMPXX ... -- Found GMPXX: /usr/lib64/libgmpxx.so -- GMPXX has been preconfigured: -- UseGMPXX-file: -- GMPXX include: /usr/include -- GMPXX libraries: /usr/lib64/libgmpxx.so -- GMPXX definitions: -- Preconfiguring library: MPFR ... -- Found MPFR: /usr/lib64/libmpfr.so -- MPFR has been preconfigured: -- UseMPFR-file: -- MPFR include: /usr/include -- MPFR libraries: /usr/lib64/libmpfr.so -- MPFR definitions: -- USING MPFR_VERSION = '3.1.3' CMake Error at /usr/share/cmake/Modules/FindBoost.cmake:1286 (message): Unable to find the requested Boost libraries. Boost version: 1.56.0 Boost include path: /usr/include Could not find the following Boost libraries: boost_thread Some (but not all) of the required Boost libraries were found. You may need to install these additional Boost libraries. Alternatively, set BOOST_LIBRARYDIR to the directory containing Boost libraries or BOOST_ROOT to the location of Boost. Call Stack (most recent call first): cmake/modules/CGAL_SetupBoost.cmake:6 (find_package) cmake/modules/CGAL_SetupDependencies.cmake:85 (include) CMakeLists.txt:593 (include) -- Boost include: /usr/include -- Boost libraries: -- Boost definitions: -- USING BOOST_VERSION = '1.56.0' == Detect external libraries (DONE) == == Write compiler_config.h == -- Performing Test CGAL_CFG_BOOST_VARIANT_SWAP_BUG - Success -- Performing Test CGAL_CFG_DENORMALS_COMPILE_BUG - Success -- Performing Test CGAL_CFG_FPU_ROUNDING_MODE_UNWINDING_VC_BUG - Success -- Performing Test CGAL_CFG_IEEE_754_BUG - Success -- Performing Test CGAL_CFG_ISTREAM_INT_BUG - Success -- Performing Test CGAL_CFG_MATCHING_BUG_5 - Success -- Performing Test CGAL_CFG_MATCHING_BUG_6 - Success -- Performing Test CGAL_CFG_NESTED_CLASS_FRIEND_DECLARATION_BUG - Success -- Performing Test CGAL_CFG_NO_LIMITS - Success -- Performing Test CGAL_CFG_NO_NEXTAFTER - Success -- Performing Test CGAL_CFG_NO_STL - Success -- Performing Test CGAL_CFG_NO_WARNING_CPP_DIRECTIVE_BUG - Success -- Performing Test CGAL_CFG_NUMERIC_LIMITS_BUG - Success -- Performing Test CGAL_CFG_OUTOFLINE_MEMBER_DEFINITION_BUG - Success -- Performing Test CGAL_CFG_TEMPLATE_IN_DEFAULT_PARAMETER_BUG - Success -- Performing Test CGAL_CFG_TYPENAME_BEFORE_DEFAULT_ARGUMENT_BUG - Success -- Performing Test CGAL_CFG_USING_BASE_MEMBER_BUG_2 - Success == Write compiler_config.h (DONE) == == Generating build files == Configuring libCGAL -- Requested component: MPFR -- Requested component: GMPXX -- Requested component: GMP libCGAL is configured -- Sources for CGAL component library 'CGAL_Qt4' detected -- Sources for CGAL component library 'CGAL_Core' detected Configuring libCGAL_Core -- Requested component: MPFR -- Requested component: GMPXX -- Requested component: GMP libCGAL_Core is configured -- Sources for CGAL component library 'CGAL_Qt3' detected -- Sources for CGAL component library 'CGAL_ImageIO' detected Configuring libCGAL_ImageIO -- Found OpenGL: /usr/lib64/libGL.so -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.8") -- OpenGL include: /usr/include -- OpenGL libraries: /usr/lib64/libGLU.so;/usr/lib64/libGL.so -- USING ZLIB_VERSION = '1.2.8' -- Requested component: MPFR -- Requested component: GMPXX -- Requested component: GMP libCGAL_ImageIO is configured -- Sources for CGAL component libraries 'CGAL_Core;CGAL_ImageIO;CGAL_Qt3;CGAL_Qt4' detected == Generating build files (DONE) == -- <<< Gentoo configuration >>> Build type Release Install path /usr Compiler flags: C -march=native -O2 -pipe C++ -march=native -O2 -pipe -frounding-math Linker flags: Executable -Wl,-O1 -Wl,--as-needed Module -Wl,-O1 -Wl,--as-needed Shared -Wl,-O1 -Wl,--as-needed -- Configuring incomplete, errors occurred! See also "/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build/CMakeFiles/CMakeOutput.log". * ERROR: sci-mathematics/cgal-4.3-r1::gentoo failed (configure phase): * cmake failed * * Call stack: * ebuild.sh, line 133: Called src_configure * environment, line 2899: Called cmake-utils_src_configure * environment, line 783: Called _cmake_execute_optionally 'src_configure' * environment, line 313: Called enable_cmake-utils_src_configure * environment, line 1123: Called die * The specific snippet of code: * "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed"; * * If you need support, post the output of `emerge --info '=sci-mathematics/cgal-4.3-r1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-mathematics/cgal-4.3-r1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-mathematics:cgal-4.3-r1:20160423-102801.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/cgal-4.3-r1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/cgal-4.3-r1/temp/environment'. * Working directory: '/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/cgal-4.3_build' * S: '/var/tmp/portage/sci-mathematics/cgal-4.3-r1/work/CGAL-4.3'