* Package: sci-chemistry/tinker-7.1.2 * Repository: gentoo * Maintainer: sci-chemistry@gentoo.org * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU * FEATURES: preserve-libs sandbox userpriv usersandbox * Using following Fortran compiler: * F77: x86_64-pc-linux-gnu-gfortran * FC: x86_64-pc-linux-gnu-gfortran >>> Unpacking source... >>> Unpacking tinker-7.1.2.tar.gz to /var/tmp/portage/sci-chemistry/tinker-7.1.2/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/tinker-7.1.2/work >>> Preparing source in /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source ... * Applying 7.1.2-openmp.patch ... [ ok ] * Applying tinker-7.1.2-build.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source ... make -j1 -f ../make/Makefile F77=x86_64-pc-linux-gnu-gfortran 'CC=x86_64-pc-linux-gnu-gcc -c' F77FLAGS=-c 'OPTFLAGS=-O2 -pipe -fopenmp' 'LINKFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/' 'INCLUDEDIR=-I/etc/java-config-2/current-system-vm/include -I/etc/java-config-2/current-system-vm/include/linux -I/usr/include' 'LIBS=-lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3' all x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp analyz.f -o analyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sizes.f -o sizes.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp atoms.f -o atoms.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp energi.f -o energi.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp files.f -o files.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp inform.f -o inform.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp iounit.f -o iounit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp katoms.f -o katoms.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mutant.f -o mutant.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp potent.f -o potent.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp units.f -o units.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp usage.f -o usage.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp alchemy.f -o alchemy.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp action.f -o action.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp keys.f -o keys.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp active.f -o active.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp align.f -o align.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bound.f -o bound.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp group.f -o group.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp inter.f -o inter.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp limits.f -o limits.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vdwpot.f -o vdwpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp analysis.f -o analysis.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp angang.f -o angang.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp angbnd.f -o angbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp angpot.f -o angpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp angtor.f -o angtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp atomid.f -o atomid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bitor.f -o bitor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bndstr.f -o bndstr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp boxes.f -o boxes.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp charge.f -o charge.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chgpot.f -o chgpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp couple.f -o couple.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp dipole.f -o dipole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ewald.f -o ewald.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fields.f -o fields.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp improp.f -o improp.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp imptor.f -o imptor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp korbs.f -o korbs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ktrtor.f -o ktrtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kvdws.f -o kvdws.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp math.f -o math.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp molcul.f -o molcul.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp moment.f -o moment.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mpole.f -o mpole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp opbend.f -o opbend.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp opdist.f -o opdist.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp piorbs.f -o piorbs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pistuf.f -o pistuf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pitors.f -o pitors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pme.f -o pme.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp polar.f -o polar.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp polgrp.f -o polgrp.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp solute.f -o solute.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp strbnd.f -o strbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp strtor.f -o strtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp tors.f -o tors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp tortor.f -o tortor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp urey.f -o urey.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vdw.f -o vdw.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp virial.f -o virial.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp analyze.f -o analyze.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp atmlst.f -o atmlst.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp angles.f -o angles.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bath.f -o bath.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mdstuf.f -o mdstuf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp warp.f -o warp.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp anneal.f -o anneal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp titles.f -o titles.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp archive.f -o archive.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp argue.f -o argue.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ascii.f -o ascii.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp attach.f -o attach.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bar.f -o bar.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp basefile.f -o basefile.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp freeze.f -o freeze.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp moldyn.f -o moldyn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp beeman.f -o beeman.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bicubic.f -o bicubic.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bitors.f -o bitors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bndpot.f -o bndpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bonds.f -o bonds.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp deriv.f -o deriv.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pbstuf.f -o pbstuf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp born.f -o born.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bounds.f -o bounds.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp bussi.f -o bussi.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp calendar.f -o calendar.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp cell.f -o cell.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp center.f -o center.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chkpole.f -o chkpole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chkring.f -o chkring.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chkxyz.f -o chkxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp cholesky.f -o cholesky.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chrono.f -o chrono.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp chunks.f -o chunks.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp clock.f -o clock.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp cluster.f -o cluster.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp column.f -o column.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp command.f -o command.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp zclose.f -o zclose.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp zcoord.f -o zcoord.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp connect.f -o connect.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp faces.f -o faces.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp connolly.f -o connolly.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp output.f -o output.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp control.f -o control.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp correlate.f -o correlate.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp crystal.f -o crystal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp cspline.f -o cspline.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hescut.f -o hescut.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp neigh.f -o neigh.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp polpot.f -o polpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp tarray.f -o tarray.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp cutoffs.f -o cutoffs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp deflate.f -o deflate.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp delete.f -o delete.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp diagq.f -o diagq.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp diffeq.f -o diffeq.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp diffuse.f -o diffuse.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp disgeo.f -o disgeo.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp refer.f -o refer.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp restrn.f -o restrn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp distgeom.f -o distgeom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp dma.f -o dma.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp document.f -o document.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp domega.f -o domega.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp stodyn.f -o stodyn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp dynamic.f -o dynamic.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangang.f -o eangang.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangang1.f -o eangang1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hessn.f -o hessn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangang2.f -o eangang2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangang3.f -o eangang3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangle.f -o eangle.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangle1.f -o eangle1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangle2.f -o eangle2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangle3.f -o eangle3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp torpot.f -o torpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangtor.f -o eangtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangtor1.f -o eangtor1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangtor2.f -o eangtor2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eangtor3.f -o eangtor3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebond.f -o ebond.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebond1.f -o ebond1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebond2.f -o ebond2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebond3.f -o ebond3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp light.f -o light.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp shunt.f -o shunt.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebuck.f -o ebuck.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebuck1.f -o ebuck1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebuck2.f -o ebuck2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ebuck3.f -o ebuck3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echarge.f -o echarge.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echarge1.f -o echarge1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echarge2.f -o echarge2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echarge3.f -o echarge3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echgdpl.f -o echgdpl.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echgdpl1.f -o echgdpl1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echgdpl2.f -o echgdpl2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp echgdpl3.f -o echgdpl3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp edipole.f -o edipole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp edipole1.f -o edipole1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp edipole2.f -o edipole2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp edipole3.f -o edipole3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egauss.f -o egauss.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egauss1.f -o egauss1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egauss2.f -o egauss2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egauss3.f -o egauss3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egeom.f -o egeom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egeom1.f -o egeom1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egeom2.f -o egeom2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp egeom3.f -o egeom3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ehal.f -o ehal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ehal1.f -o ehal1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ehal2.f -o ehal2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ehal3.f -o ehal3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimprop.f -o eimprop.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimprop1.f -o eimprop1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimprop2.f -o eimprop2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimprop3.f -o eimprop3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimptor.f -o eimptor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimptor1.f -o eimptor1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimptor2.f -o eimptor2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eimptor3.f -o eimptor3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp elj.f -o elj.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp elj1.f -o elj1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp elj2.f -o elj2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp elj3.f -o elj3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp minima.f -o minima.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp embed.f -o embed.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kchrge.f -o kchrge.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emetal.f -o emetal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emetal1.f -o emetal1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emetal2.f -o emetal2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emetal3.f -o emetal3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emm3hb.f -o emm3hb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emm3hb1.f -o emm3hb1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emm3hb2.f -o emm3hb2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp emm3hb3.f -o emm3hb3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mplpot.f -o mplpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp empole.f -o empole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp empole1.f -o empole1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp empole2.f -o empole2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp empole3.f -o empole3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rigid.f -o rigid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp energy.f -o energy.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopbend.f -o eopbend.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopbend1.f -o eopbend1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopbend2.f -o eopbend2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopbend3.f -o eopbend3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopdist.f -o eopdist.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopdist1.f -o eopdist1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopdist2.f -o eopdist2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eopdist3.f -o eopdist3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp epitors.f -o epitors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp epitors1.f -o epitors1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp epitors2.f -o epitors2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp epitors3.f -o epitors3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp erf.f -o erf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rxnfld.f -o rxnfld.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rxnpot.f -o rxnpot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp erxnfld.f -o erxnfld.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp erxnfld1.f -o erxnfld1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp erxnfld2.f -o erxnfld2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp erxnfld3.f -o erxnfld3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gkstuf.f -o gkstuf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hpmf.f -o hpmf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nonpol.f -o nonpol.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp esolv.f -o esolv.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp esolv1.f -o esolv1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp esolv2.f -o esolv2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp esolv3.f -o esolv3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrbnd.f -o estrbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrbnd1.f -o estrbnd1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrbnd2.f -o estrbnd2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrbnd3.f -o estrbnd3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrtor.f -o estrtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrtor1.f -o estrtor1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrtor2.f -o estrtor2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp estrtor3.f -o estrtor3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etors.f -o etors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etors1.f -o etors1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etors2.f -o etors2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etors3.f -o etors3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etortor.f -o etortor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etortor1.f -o etortor1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etortor2.f -o etortor2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp etortor3.f -o etortor3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp urypot.f -o urypot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eurey.f -o eurey.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eurey1.f -o eurey1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eurey2.f -o eurey2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp eurey3.f -o eurey3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp evcorr.f -o evcorr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp extra.f -o extra.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp extra1.f -o extra1.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp extra2.f -o extra2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp extra3.f -o extra3.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fatal.f -o fatal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fft.f -o fft.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp openmp.f -o openmp.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fft3d.f -o fft3d.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fftpack.f -o fftpack.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp field.f -o field.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp fracs.f -o fracs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp merck.f -o merck.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp omega.f -o omega.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp orbits.f -o orbits.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp paths.f -o paths.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pdb.f -o pdb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp qmstuf.f -o qmstuf.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rgddyn.f -o rgddyn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ring.f -o ring.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rotbnd.f -o rotbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp socket.f -o socket.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp syntrn.f -o syntrn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp uprior.f -o uprior.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp usolve.f -o usolve.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vibs.f -o vibs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp final.f -o final.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp flatten.f -o flatten.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp freeunit.f -o freeunit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gda.f -o gda.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp geometry.f -o geometry.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getint.f -o getint.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getkey.f -o getkey.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getmol.f -o getmol.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getmol2.f -o getmol2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getnumb.f -o getnumb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getpdb.f -o getpdb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp params.f -o params.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getprm.f -o getprm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getref.f -o getref.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getstring.f -o getstring.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gettext.f -o gettext.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getword.f -o getword.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp getxyz.f -o getxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ghmcstep.f -o ghmcstep.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gradient.f -o gradient.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gradrgd.f -o gradrgd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gradrot.f -o gradrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp groups.f -o groups.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp grpline.f -o grpline.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp gyrate.f -o gyrate.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hessian.f -o hessian.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hessrgd.f -o hessrgd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hessrot.f -o hessrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kangs.f -o kangs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kbonds.f -o kbonds.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kdipol.f -o kdipol.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kitors.f -o kitors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kstbnd.f -o kstbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ksttor.f -o ksttor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ktorsn.f -o ktorsn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp hybrid.f -o hybrid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp image.f -o image.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp impose.f -o impose.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp induce.f -o induce.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp inertia.f -o inertia.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ptable.f -o ptable.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp initatom.f -o initatom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp linmin.f -o linmin.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp precis.f -o precis.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp scales.f -o scales.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sequen.f -o sequen.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp initial.f -o initial.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kanang.f -o kanang.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kantor.f -o kantor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp khbond.f -o khbond.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kiprop.f -o kiprop.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kmulti.f -o kmulti.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kopbnd.f -o kopbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kopdst.f -o kopdst.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kpitor.f -o kpitor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kpolr.f -o kpolr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kurybr.f -o kurybr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kvdwpr.f -o kvdwpr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp initprm.f -o initprm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp resdue.f -o resdue.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp initres.f -o initres.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp initrot.f -o initrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp insert.f -o insert.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp intedit.f -o intedit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp intxyz.f -o intxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp invbeta.f -o invbeta.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp invert.f -o invert.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp jacobi.f -o jacobi.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kangang.f -o kangang.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kangle.f -o kangle.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kangtor.f -o kangtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp katom.f -o katom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kbond.f -o kbond.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kcharge.f -o kcharge.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kdipole.f -o kdipole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kewald.f -o kewald.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kextra.f -o kextra.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kgeom.f -o kgeom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kimprop.f -o kimprop.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kimptor.f -o kimptor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kinetic.f -o kinetic.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kmetal.f -o kmetal.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kmpole.f -o kmpole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kopbend.f -o kopbend.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kopdist.f -o kopdist.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp korbit.f -o korbit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kpitors.f -o kpitors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kpolar.f -o kpolar.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ksolv.f -o ksolv.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kstrbnd.f -o kstrbnd.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kstrtor.f -o kstrtor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ktors.f -o ktors.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ktortor.f -o ktortor.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kurey.f -o kurey.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp kvdw.f -o kvdw.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp lattice.f -o lattice.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp lbfgs.f -o lbfgs.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp lights.f -o lights.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp makeint.f -o makeint.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp makeref.f -o makeref.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp makexyz.f -o makexyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp maxwell.f -o maxwell.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mdinit.f -o mdinit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mdrest.f -o mdrest.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mdsave.f -o mdsave.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mdstat.f -o mdstat.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mechanic.f -o mechanic.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp merge.f -o merge.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp minimize.f -o minimize.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp minirot.f -o minirot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp minrigid.f -o minrigid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp molecule.f -o molecule.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp molxyz.f -o molxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp moments.f -o moments.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp monte.f -o monte.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp mutate.f -o mutate.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nblist.f -o nblist.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp newton.f -o newton.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp newtrot.f -o newtrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nextarg.f -o nextarg.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nexttext.f -o nexttext.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nose.f -o nose.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nspline.f -o nspline.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nucleo.f -o nucleo.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp nucleic.f -o nucleic.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp number.f -o number.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp numeral.f -o numeral.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp numgrad.f -o numgrad.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp ocvm.f -o ocvm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp openend.f -o openend.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp optimize.f -o optimize.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp optirot.f -o optirot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp optrigid.f -o optrigid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp optsave.f -o optsave.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp orbital.f -o orbital.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp orient.f -o orient.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp orthog.f -o orthog.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp overlap.f -o overlap.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp path.f -o path.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pdbxyz.f -o pdbxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp phipsi.f -o phipsi.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp picalc.f -o picalc.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pmestuff.f -o pmestuff.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pmpb.f -o pmpb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp polarize.f -o polarize.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp poledit.f -o poledit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp polymer.f -o polymer.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp potfit.f -o potfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp potential.f -o potential.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp precise.f -o precise.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pressure.f -o pressure.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prmedit.f -o prmedit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prmkey.f -o prmkey.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp promo.f -o promo.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp protein.f -o protein.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtdyn.f -o prtdyn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prterr.f -o prterr.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtint.f -o prtint.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtmol2.f -o prtmol2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtpdb.f -o prtpdb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtprm.f -o prtprm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtseq.f -o prtseq.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp prtxyz.f -o prtxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp tree.f -o tree.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pss.f -o pss.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pssrigid.f -o pssrigid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp pssrot.f -o pssrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp qrfact.f -o qrfact.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp quatfit.f -o quatfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp radial.f -o radial.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp random.f -o random.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rattle.f -o rattle.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readdyn.f -o readdyn.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readgau.f -o readgau.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readint.f -o readint.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readmol.f -o readmol.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readmol2.f -o readmol2.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readpdb.f -o readpdb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readprm.f -o readprm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readseq.f -o readseq.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp readxyz.f -o readxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp replica.f -o replica.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp respa.f -o respa.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rgdstep.f -o rgdstep.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rings.f -o rings.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rmsfit.f -o rmsfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rotlist.f -o rotlist.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp rotpole.f -o rotpole.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp saddle.f -o saddle.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp scan.f -o scan.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sdstep.f -o sdstep.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp search.f -o search.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp server.f -o server.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp shakeup.f -o shakeup.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sigmoid.f -o sigmoid.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sktstuff.f -o sktstuff.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sniffer.f -o sniffer.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sort.f -o sort.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp spacefill.f -o spacefill.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp spectrum.f -o spectrum.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp square.f -o square.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp suffix.f -o suffix.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp superpose.f -o superpose.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp surface.f -o surface.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp surfatom.f -o surfatom.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp switch.f -o switch.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp sybylxyz.f -o sybylxyz.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp temper.f -o temper.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp testgrad.f -o testgrad.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp testhess.f -o testhess.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp testpair.f -o testpair.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp testpol.f -o testpol.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp testrot.f -o testrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp timer.f -o timer.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp timerot.f -o timerot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp tncg.f -o tncg.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp torphase.f -o torphase.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp torque.f -o torque.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp torsfit.f -o torsfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp torsions.f -o torsions.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp trimtext.f -o trimtext.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp unitcell.f -o unitcell.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp valfit.f -o valfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp valence.f -o valence.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp verlet.f -o verlet.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp version.f -o version.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vibbig.f -o vibbig.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vibrate.f -o vibrate.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp vibrot.f -o vibrot.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp volume.f -o volume.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xtals.f -o xtals.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xtalfit.f -o xtalfit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xtalmin.f -o xtalmin.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xyzatm.f -o xyzatm.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xyzedit.f -o xyzedit.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xyzint.f -o xyzint.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xyzpdb.f -o xyzpdb.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp xyzsybyl.f -o xyzsybyl.o x86_64-pc-linux-gnu-gfortran -c -O2 -pipe -fopenmp zatom.f -o zatom.o ar -crusv libtinker.a \ action.o \ active.o \ align.o \ analysis.o \ analyz.o \ angang.o \ angbnd.o \ angles.o \ angpot.o \ angtor.o \ argue.o \ ascii.o \ atmlst.o \ atomid.o \ atoms.o \ attach.o \ basefile.o \ bath.o \ beeman.o \ bicubic.o \ bitor.o \ bitors.o \ bndpot.o \ bndstr.o \ bonds.o \ born.o \ bound.o \ bounds.o \ boxes.o \ bussi.o \ calendar.o \ cell.o \ center.o \ charge.o \ chgpot.o \ chkpole.o \ chkring.o \ chkxyz.o \ cholesky.o \ chrono.o \ chunks.o \ clock.o \ cluster.o \ column.o \ command.o \ connect.o \ connolly.o \ control.o \ couple.o \ cspline.o \ cutoffs.o \ deflate.o \ delete.o \ deriv.o \ diagq.o \ diffeq.o \ dipole.o \ disgeo.o \ dma.o \ domega.o \ eangang.o \ eangang1.o \ eangang2.o \ eangang3.o \ eangle.o \ eangle1.o \ eangle2.o \ eangle3.o \ eangtor.o \ eangtor1.o \ eangtor2.o \ eangtor3.o \ ebond.o \ ebond1.o \ ebond2.o \ ebond3.o \ ebuck.o \ ebuck1.o \ ebuck2.o \ ebuck3.o \ echarge.o \ echarge1.o \ echarge2.o \ echarge3.o \ echgdpl.o \ echgdpl1.o \ echgdpl2.o \ echgdpl3.o \ edipole.o \ edipole1.o \ edipole2.o \ edipole3.o \ egauss.o \ egauss1.o \ egauss2.o \ egauss3.o \ egeom.o \ egeom1.o \ egeom2.o \ egeom3.o \ ehal.o \ ehal1.o \ ehal2.o \ ehal3.o \ eimprop.o \ eimprop1.o \ eimprop2.o \ eimprop3.o \ eimptor.o \ eimptor1.o \ eimptor2.o \ eimptor3.o \ elj.o \ elj1.o \ elj2.o \ elj3.o \ embed.o \ emetal.o \ emetal1.o \ emetal2.o \ emetal3.o \ emm3hb.o \ emm3hb1.o \ emm3hb2.o \ emm3hb3.o \ empole.o \ empole1.o \ empole2.o \ empole3.o \ energi.o \ energy.o \ eopbend.o \ eopbend1.o \ eopbend2.o \ eopbend3.o \ eopdist.o \ eopdist1.o \ eopdist2.o \ eopdist3.o \ epitors.o \ epitors1.o \ epitors2.o \ epitors3.o \ erf.o \ erxnfld.o \ erxnfld1.o \ erxnfld2.o \ erxnfld3.o \ esolv.o \ esolv1.o \ esolv2.o \ esolv3.o \ estrbnd.o \ estrbnd1.o \ estrbnd2.o \ estrbnd3.o \ estrtor.o \ estrtor1.o \ estrtor2.o \ estrtor3.o \ etors.o \ etors1.o \ etors2.o \ etors3.o \ etortor.o \ etortor1.o \ etortor2.o \ etortor3.o \ eurey.o \ eurey1.o \ eurey2.o \ eurey3.o \ evcorr.o \ ewald.o \ extra.o \ extra1.o \ extra2.o \ extra3.o \ faces.o \ fatal.o \ fft.o \ fft3d.o \ fftpack.o \ field.o \ fields.o \ files.o \ final.o \ flatten.o \ fracs.o \ freeunit.o \ freeze.o \ geometry.o \ getint.o \ getkey.o \ getmol.o \ getmol2.o \ getnumb.o \ getpdb.o \ getprm.o \ getref.o \ getstring.o \ gettext.o \ getword.o \ getxyz.o \ ghmcstep.o \ gkstuf.o \ gradient.o \ gradrgd.o \ gradrot.o \ group.o \ groups.o \ grpline.o \ gyrate.o \ hescut.o \ hessian.o \ hessn.o \ hessrgd.o \ hessrot.o \ hpmf.o \ hybrid.o \ image.o \ impose.o \ improp.o \ imptor.o \ induce.o \ inertia.o \ inform.o \ initatom.o \ initial.o \ initprm.o \ initres.o \ initrot.o \ insert.o \ inter.o \ invbeta.o \ invert.o \ iounit.o \ jacobi.o \ kanang.o \ kangang.o \ kangle.o \ kangs.o \ kangtor.o \ kantor.o \ katom.o \ katoms.o \ kbond.o \ kbonds.o \ kcharge.o \ kchrge.o \ kdipol.o \ kdipole.o \ kewald.o \ kextra.o \ keys.o \ kgeom.o \ khbond.o \ kimprop.o \ kimptor.o \ kinetic.o \ kiprop.o \ kitors.o \ kmetal.o \ kmpole.o \ kmulti.o \ kopbend.o \ kopbnd.o \ kopdist.o \ kopdst.o \ korbit.o \ korbs.o \ kpitor.o \ kpitors.o \ kpolar.o \ kpolr.o \ ksolv.o \ kstbnd.o \ kstrbnd.o \ kstrtor.o \ ksttor.o \ ktors.o \ ktorsn.o \ ktortor.o \ ktrtor.o \ kurey.o \ kurybr.o \ kvdw.o \ kvdwpr.o \ kvdws.o \ lattice.o \ lbfgs.o \ light.o \ lights.o \ limits.o \ linmin.o \ makeint.o \ makeref.o \ makexyz.o \ math.o \ maxwell.o \ mdinit.o \ mdrest.o \ mdsave.o \ mdstat.o \ mdstuf.o \ mechanic.o \ merck.o \ merge.o \ minima.o \ molcul.o \ moldyn.o \ molecule.o \ moment.o \ moments.o \ mplpot.o \ mpole.o \ mutant.o \ mutate.o \ nblist.o \ neigh.o \ nextarg.o \ nexttext.o \ nonpol.o \ nose.o \ nspline.o \ nucleo.o \ number.o \ numeral.o \ numgrad.o \ ocvm.o \ omega.o \ opbend.o \ opdist.o \ openend.o \ openmp.o \ optsave.o \ orbital.o \ orbits.o \ orient.o \ orthog.o \ output.o \ overlap.o \ params.o \ paths.o \ pbstuf.o \ pdb.o \ phipsi.o \ picalc.o \ piorbs.o \ pistuf.o \ pitors.o \ pme.o \ pmestuff.o \ pmpb.o \ polar.o \ polgrp.o \ polpot.o \ polymer.o \ potent.o \ potfit.o \ precis.o \ precise.o \ pressure.o \ prmkey.o \ promo.o \ prtdyn.o \ prterr.o \ prtint.o \ prtmol2.o \ prtpdb.o \ prtprm.o \ prtseq.o \ prtxyz.o \ ptable.o \ qmstuf.o \ qrfact.o \ quatfit.o \ random.o \ rattle.o \ readdyn.o \ readgau.o \ readint.o \ readmol.o \ readmol2.o \ readpdb.o \ readprm.o \ readseq.o \ readxyz.o \ refer.o \ replica.o \ resdue.o \ respa.o \ restrn.o \ rgddyn.o \ rgdstep.o \ rigid.o \ ring.o \ rings.o \ rmsfit.o \ rotbnd.o \ rotlist.o \ rotpole.o \ rxnfld.o \ rxnpot.o \ scales.o \ sdstep.o \ search.o \ sequen.o \ server.o \ shakeup.o \ shunt.o \ sigmoid.o \ sizes.o \ sktstuff.o \ socket.o \ solute.o \ sort.o \ square.o \ stodyn.o \ strbnd.o \ strtor.o \ suffix.o \ surface.o \ surfatom.o \ switch.o \ syntrn.o \ tarray.o \ temper.o \ titles.o \ tncg.o \ torphase.o \ torpot.o \ torque.o \ tors.o \ torsions.o \ tortor.o \ tree.o \ trimtext.o \ unitcell.o \ units.o \ uprior.o \ urey.o \ urypot.o \ usage.o \ usolve.o \ valfit.o \ vdw.o \ vdwpot.o \ verlet.o \ version.o \ vibs.o \ virial.o \ volume.o \ warp.o \ xtals.o \ xyzatm.o \ zatom.o \ zclose.o \ zcoord.o a - action.o a - active.o a - align.o a - analysis.o a - analyz.o a - angang.o a - angbnd.o a - angles.o a - angpot.o a - angtor.o a - argue.o a - ascii.o a - atmlst.o a - atomid.o a - atoms.o a - attach.o a - basefile.o a - bath.o a - beeman.o a - bicubic.o a - bitor.o a - bitors.o a - bndpot.o a - bndstr.o a - bonds.o a - born.o a - bound.o a - bounds.o a - boxes.o a - bussi.o a - calendar.o a - cell.o a - center.o a - charge.o a - chgpot.o a - chkpole.o a - chkring.o a - chkxyz.o a - cholesky.o a - chrono.o a - chunks.o a - clock.o a - cluster.o a - column.o a - command.o a - connect.o a - connolly.o a - control.o a - couple.o a - cspline.o a - cutoffs.o a - deflate.o a - delete.o a - deriv.o a - diagq.o a - diffeq.o a - dipole.o a - disgeo.o a - dma.o a - domega.o a - eangang.o a - eangang1.o a - eangang2.o a - eangang3.o a - eangle.o a - eangle1.o a - eangle2.o a - eangle3.o a - eangtor.o a - eangtor1.o a - eangtor2.o a - eangtor3.o a - ebond.o a - ebond1.o a - ebond2.o a - ebond3.o a - ebuck.o a - ebuck1.o a - ebuck2.o a - ebuck3.o a - echarge.o a - echarge1.o a - echarge2.o a - echarge3.o a - echgdpl.o a - echgdpl1.o a - echgdpl2.o a - echgdpl3.o a - edipole.o a - edipole1.o a - edipole2.o a - edipole3.o a - egauss.o a - egauss1.o a - egauss2.o a - egauss3.o a - egeom.o a - egeom1.o a - egeom2.o a - egeom3.o a - ehal.o a - ehal1.o a - ehal2.o a - ehal3.o a - eimprop.o a - eimprop1.o a - eimprop2.o a - eimprop3.o a - eimptor.o a - eimptor1.o a - eimptor2.o a - eimptor3.o a - elj.o a - elj1.o a - elj2.o a - elj3.o a - embed.o a - emetal.o a - emetal1.o a - emetal2.o a - emetal3.o a - emm3hb.o a - emm3hb1.o a - emm3hb2.o a - emm3hb3.o a - empole.o a - empole1.o a - empole2.o a - empole3.o a - energi.o a - energy.o a - eopbend.o a - eopbend1.o a - eopbend2.o a - eopbend3.o a - eopdist.o a - eopdist1.o a - eopdist2.o a - eopdist3.o a - epitors.o a - epitors1.o a - epitors2.o a - epitors3.o a - erf.o a - erxnfld.o a - erxnfld1.o a - erxnfld2.o a - erxnfld3.o a - esolv.o a - esolv1.o a - esolv2.o a - esolv3.o a - estrbnd.o a - estrbnd1.o a - estrbnd2.o a - estrbnd3.o a - estrtor.o a - estrtor1.o a - estrtor2.o a - estrtor3.o a - etors.o a - etors1.o a - etors2.o a - etors3.o a - etortor.o a - etortor1.o a - etortor2.o a - etortor3.o a - eurey.o a - eurey1.o a - eurey2.o a - eurey3.o a - evcorr.o a - ewald.o a - extra.o a - extra1.o a - extra2.o a - extra3.o a - faces.o a - fatal.o a - fft.o a - fft3d.o a - fftpack.o a - field.o a - fields.o a - files.o a - final.o a - flatten.o a - fracs.o a - freeunit.o a - freeze.o a - geometry.o a - getint.o a - getkey.o a - getmol.o a - getmol2.o a - getnumb.o a - getpdb.o a - getprm.o a - getref.o a - getstring.o a - gettext.o a - getword.o a - getxyz.o a - ghmcstep.o a - gkstuf.o a - gradient.o a - gradrgd.o a - gradrot.o a - group.o a - groups.o a - grpline.o a - gyrate.o a - hescut.o a - hessian.o a - hessn.o a - hessrgd.o a - hessrot.o a - hpmf.o a - hybrid.o a - image.o a - impose.o a - improp.o a - imptor.o a - induce.o a - inertia.o a - inform.o a - initatom.o a - initial.o a - initprm.o a - initres.o a - initrot.o a - insert.o a - inter.o a - invbeta.o a - invert.o a - iounit.o a - jacobi.o a - kanang.o a - kangang.o a - kangle.o a - kangs.o a - kangtor.o a - kantor.o a - katom.o a - katoms.o a - kbond.o a - kbonds.o a - kcharge.o a - kchrge.o a - kdipol.o a - kdipole.o a - kewald.o a - kextra.o a - keys.o a - kgeom.o a - khbond.o a - kimprop.o a - kimptor.o a - kinetic.o a - kiprop.o a - kitors.o a - kmetal.o a - kmpole.o a - kmulti.o a - kopbend.o a - kopbnd.o a - kopdist.o a - kopdst.o a - korbit.o a - korbs.o a - kpitor.o a - kpitors.o a - kpolar.o a - kpolr.o a - ksolv.o a - kstbnd.o a - kstrbnd.o a - kstrtor.o a - ksttor.o a - ktors.o a - ktorsn.o a - ktortor.o a - ktrtor.o a - kurey.o a - kurybr.o a - kvdw.o a - kvdwpr.o a - kvdws.o a - lattice.o a - lbfgs.o a - light.o a - lights.o a - limits.o a - linmin.o a - makeint.o a - makeref.o a - makexyz.o a - math.o a - maxwell.o a - mdinit.o a - mdrest.o a - mdsave.o a - mdstat.o a - mdstuf.o a - mechanic.o a - merck.o a - merge.o a - minima.o a - molcul.o a - moldyn.o a - molecule.o a - moment.o a - moments.o a - mplpot.o a - mpole.o a - mutant.o a - mutate.o a - nblist.o a - neigh.o a - nextarg.o a - nexttext.o a - nonpol.o a - nose.o a - nspline.o a - nucleo.o a - number.o a - numeral.o a - numgrad.o a - ocvm.o a - omega.o a - opbend.o a - opdist.o a - openend.o a - openmp.o a - optsave.o a - orbital.o a - orbits.o a - orient.o a - orthog.o a - output.o a - overlap.o a - params.o a - paths.o a - pbstuf.o a - pdb.o a - phipsi.o a - picalc.o a - piorbs.o a - pistuf.o a - pitors.o a - pme.o a - pmestuff.o a - pmpb.o a - polar.o a - polgrp.o a - polpot.o a - polymer.o a - potent.o a - potfit.o a - precis.o a - precise.o a - pressure.o a - prmkey.o a - promo.o a - prtdyn.o a - prterr.o a - prtint.o a - prtmol2.o a - prtpdb.o a - prtprm.o a - prtseq.o a - prtxyz.o a - ptable.o a - qmstuf.o a - qrfact.o a - quatfit.o a - random.o a - rattle.o a - readdyn.o a - readgau.o a - readint.o a - readmol.o a - readmol2.o a - readpdb.o a - readprm.o a - readseq.o a - readxyz.o a - refer.o a - replica.o a - resdue.o a - respa.o a - restrn.o a - rgddyn.o a - rgdstep.o a - rigid.o a - ring.o a - rings.o a - rmsfit.o a - rotbnd.o a - rotlist.o a - rotpole.o a - rxnfld.o a - rxnpot.o a - scales.o a - sdstep.o a - search.o a - sequen.o a - server.o a - shakeup.o a - shunt.o a - sigmoid.o a - sizes.o a - sktstuff.o a - socket.o a - solute.o a - sort.o a - square.o a - stodyn.o a - strbnd.o a - strtor.o a - suffix.o a - surface.o a - surfatom.o a - switch.o a - syntrn.o a - tarray.o a - temper.o a - titles.o a - tncg.o a - torphase.o a - torpot.o a - torque.o a - tors.o a - torsions.o a - tortor.o a - tree.o a - trimtext.o a - unitcell.o a - units.o a - uprior.o a - urey.o a - urypot.o a - usage.o a - usolve.o a - valfit.o a - vdw.o a - vdwpot.o a - verlet.o a - version.o a - vibs.o a - virial.o a - volume.o a - warp.o a - xtals.o a - xyzatm.o a - zatom.o a - zclose.o a - zcoord.o ranlib -c libtinker.a ranlib: invalid option -- 'c' x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o alchemy.x alchemy.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true alchemy.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o analyze.x analyze.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true analyze.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o anneal.x anneal.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true anneal.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o archive.x archive.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true archive.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o bar.x bar.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true bar.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o correlate.x correlate.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true correlate.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o crystal.x crystal.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true crystal.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o diffuse.x diffuse.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true diffuse.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o distgeom.x distgeom.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true distgeom.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o document.x document.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true document.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o dynamic.x dynamic.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true dynamic.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o gda.x gda.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true gda.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o intedit.x intedit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true intedit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o intxyz.x intxyz.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true intxyz.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o minimize.x minimize.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true minimize.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o minirot.x minirot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true minirot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o minrigid.x minrigid.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true minrigid.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o molxyz.x molxyz.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true molxyz.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o monte.x monte.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true monte.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o newton.x newton.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true newton.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o newtrot.x newtrot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true newtrot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o nucleic.x nucleic.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true nucleic.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o optimize.x optimize.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true optimize.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o optirot.x optirot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true optirot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o optrigid.x optrigid.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true optrigid.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o path.x path.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true path.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o pdbxyz.x pdbxyz.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true pdbxyz.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o polarize.x polarize.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true polarize.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o poledit.x poledit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true poledit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o potential.x potential.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true potential.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o prmedit.x prmedit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true prmedit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o protein.x protein.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true protein.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o pss.x pss.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true pss.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o pssrigid.x pssrigid.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true pssrigid.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o pssrot.x pssrot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true pssrot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o radial.x radial.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true radial.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o saddle.x saddle.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true saddle.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o scan.x scan.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true scan.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o sniffer.x sniffer.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true sniffer.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o spacefill.x spacefill.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true spacefill.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o spectrum.x spectrum.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true spectrum.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o superpose.x superpose.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true superpose.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o sybylxyz.x sybylxyz.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true sybylxyz.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o testgrad.x testgrad.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true testgrad.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o testhess.x testhess.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true testhess.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o testpair.x testpair.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true testpair.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o testpol.x testpol.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true testpol.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o testrot.x testrot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true testrot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o timer.x timer.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true timer.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o timerot.x timerot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true timerot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o torsfit.x torsfit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true torsfit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o valence.x valence.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true valence.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o vibbig.x vibbig.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true vibbig.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o vibrate.x vibrate.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true vibrate.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o vibrot.x vibrot.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true vibrot.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xtalfit.x xtalfit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xtalfit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xtalmin.x xtalmin.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xtalmin.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xyzedit.x xyzedit.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xyzedit.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xyzint.x xyzint.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xyzint.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xyzpdb.x xyzpdb.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xyzpdb.x x86_64-pc-linux-gnu-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-rpath /opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -o xyzsybyl.x xyzsybyl.o libtinker.a -lmaloc -L/opt/oracle-jdk-bin-1.8.0.74/jre/lib/amd64/server/ -ljvm -lgomp -lfftw3 -lfftw3_threads -lfftw3; true xyzsybyl.x make -j1 -f ../make/Makefile BINDIR=/var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin rename mv alchemy.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/alchemy mv analyze.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/analyze mv anneal.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/anneal mv archive.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/archive mv bar.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/bar mv correlate.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/correlate mv crystal.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/crystal mv diffuse.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/diffuse mv distgeom.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/distgeom mv document.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/document mv dynamic.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/dynamic mv gda.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/gda mv intedit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/intedit mv intxyz.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/intxyz mv minimize.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/minimize mv minirot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/minirot mv minrigid.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/minrigid mv molxyz.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/molxyz mv monte.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/monte mv newton.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/newton mv newtrot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/newtrot mv nucleic.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/nucleic mv optimize.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/optimize mv optirot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/optirot mv optrigid.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/optrigid mv path.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/path mv pdbxyz.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/pdbxyz mv polarize.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/polarize mv poledit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/poledit mv potential.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/potential mv prmedit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/prmedit mv protein.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/protein mv pss.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/pss mv pssrigid.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/pssrigid mv pssrot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/pssrot mv radial.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/radial mv saddle.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/saddle mv scan.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/scan mv sniffer.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/sniffer mv spacefill.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/spacefill mv spectrum.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/spectrum mv superpose.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/superpose mv sybylxyz.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/sybylxyz mv testgrad.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/testgrad mv testhess.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/testhess mv testpair.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/testpair mv testpol.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/testpol mv testrot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/testrot mv timer.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/timer mv timerot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/timerot mv torsfit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/torsfit mv valence.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/valence mv vibbig.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/vibbig mv vibrate.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/vibrate mv vibrot.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/vibrot mv xtalfit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xtalfit mv xtalmin.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xtalmin mv xyzedit.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xyzedit mv xyzint.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xyzint mv xyzpdb.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xyzpdb mv xyzsybyl.x /var/tmp/portage/sci-chemistry/tinker-7.1.2/work/tinker/source/../bin/xyzsybyl >>> Source compiled. >>> Test phase [not enabled]: sci-chemistry/tinker-7.1.2 >>> Install tinker-7.1.2 into /var/tmp/portage/sci-chemistry/tinker-7.1.2/image/ category sci-chemistry >>> Completed installing tinker-7.1.2 into /var/tmp/portage/sci-chemistry/tinker-7.1.2/image/ * Final size of build directory: 193844 KiB * Final size of installed tree: 84096 KiB strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line -R .note.gnu.gold-version usr/bin/archive usr/bin/crystal usr/bin/diffuse usr/bin/dynamic usr/bin/gda usr/bin/intxyz usr/bin/newton usr/bin/newtrot usr/bin/polarize usr/bin/prmedit usr/bin/protein usr/bin/pssrot usr/bin/radial usr/bin/scan usr/bin/spectrum usr/bin/testpol usr/bin/vibbig usr/bin/vibrot usr/bin/xyzedit usr/bin/xyzint usr/bin/testrot usr/bin/xyzpdb usr/bin/analyze usr/bin/correlate usr/bin/intedit usr/bin/molxyz usr/bin/optimize usr/bin/optrigid usr/bin/potential usr/bin/sniffer usr/bin/superpose usr/bin/sybylxyz usr/bin/testhess usr/bin/testpair usr/bin/timer usr/bin/timerot usr/bin/torsfit usr/bin/valence usr/bin/vibrate usr/bin/xtalfit usr/bin/xtalmin usr/bin/xyzsybyl usr/bin/alchemy usr/bin/anneal usr/bin/bar usr/bin/distgeom usr/bin/document usr/bin/minimize usr/bin/minirot usr/bin/minrigid usr/bin/monte usr/bin/nucleic usr/bin/optirot usr/bin/path usr/bin/pdbxyz usr/bin/poledit usr/bin/pss usr/bin/pssrigid usr/bin/saddle usr/bin/spacefill usr/bin/testgrad ecompressdir: bzip2 -9 /usr/share/doc * This package will overwrite one or more files that may belong to other * packages (see list below). You can use a command such as `portageq * owners / ` to identify the installed package that owns a * file. If portageq reports that only one package owns a file then do * NOT file a bug report. A bug report is only useful if it identifies at * least two or more packages that are known to install the same file(s). * If a collision occurs and you can not explain where the file came from * then you should simply ignore the collision since there is not enough * information to determine if a real problem exists. Please do NOT file * a bug report at http://bugs.gentoo.org unless you report exactly which * two packages install the same file(s). See * http://wiki.gentoo.org/wiki/Knowledge_Base:Blockers for tips on how to * solve the problem. And once again, please do NOT file a bug report * unless you have completely understood the above message. * * Detected file collision(s): * * /usr/bin/bar * /usr/bin/superpose * /usr/bin/scan * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * sci-libs/ssm-1.4:0::gentoo * /usr/bin/superpose * * mail-client/nmh-1.3-r3:0::gentoo * /usr/bin/scan * * sys-apps/bar-1.11.1:0::gentoo * /usr/bin/bar * * Package 'sci-chemistry/tinker-7.1.2' NOT merged due to file * collisions. If necessary, refer to your elog messages for the whole * content of the above message. !!! When you file a bug report, please include the following information: GENTOO_VM= CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm" JAVACFLAGS="" COMPILER="" and of course, the output of emerge --info =tinker-7.1.2