sci-physics:mpb-1.4.2-r2:20160227-124710.log

sci-physics:mpb-1.4.2-r2:20160227-124710.log (text/plain), 29.50 KB, created by Toralf Förster on 2016-02-27 16:36:17 UTC

 * Package:    sci-physics/mpb-1.4.2-r2
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking mpb-1.4.2.tar.gz to /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work
>>> Source unpacked in /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work
>>> Preparing source in /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2 ...
 * Applying mpb-1.4.2-autotools.patch ...
 [ ok ]
 * Applying mpb-1.4.2-guile18.patch ...
 [ ok ]
 * Applying mpb-1.4.2-headers.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2' ...
 * Running aclocal ...
 [ ok ]
 * Running autoconf --force ...
 [ ok ]
 * Running autoheader ...
 [ ok ]
 * Running elibtoolize in: mpb-1.4.2/
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2 ...
 * econf: updating mpb-1.4.2_herm/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2_herm/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2_inv/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2_inv/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-libctl=/usr/share/libctl --with-blas=-L/usr/lib64/blas/reference -lblas  --with-lapack=-L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas  --without-hdf5
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
checking for x86_64-pc-linux-gnu-fort77... no
checking for x86_64-pc-linux-gnu-fl32... no
checking for x86_64-pc-linux-gnu-af77... no
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-f90... no
checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether the Fortran 77 compiler works... yes
checking for Fortran 77 compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
checking whether make sets $(MAKE)... yes
checking for sqrt in -lm... yes
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... (cached) -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... (cached)  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for fftw in -ldfftw... yes
checking for sgemm_ in -L/usr/lib64/blas/reference -lblas ... yes
checking for cheev_ in -L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas ... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for guile... yes
checking for guile-config... yes
checking if linking to guile works... yes
checking for scm_make_smob_type... yes
checking for SCM_SMOB_PREDICATE... yes
checking for SCM_SMOB_DATA... yes
checking for SCM_NEWSMOB... yes
checking how to activate readline in Guile... ice-9 readline
checking for libctl dir... /usr/share/libctl
checking for gen-ctl-io... yes
checking for ctl_get_vector3 in -lctl... yes
checking ctl.h usability... yes
checking ctl.h presence... yes
checking for ctl.h... yes
checking whether libctl version is at least 2.1.1... ok
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for getopt... yes
checking for strncmp... yes
checking whether calling BLAS zdotc works... yes
checking for bash... /bin/bash
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/Makefile
config.status: creating src/util/Makefile
config.status: creating src/matrices/Makefile
config.status: creating src/matrixio/Makefile
config.status: creating src/maxwell/Makefile
config.status: creating mpb-ctl/Makefile
config.status: WARNING:  'mpb-ctl/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating mpb-ctl/mpb.scm
config.status: creating mpb-ctl/mpb-split
config.status: creating utils/Makefile
config.status: WARNING:  'utils/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating src/config.h
 * econf: updating mpb-1.4.2_herm/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2_herm/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2_inv/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2_inv/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-libctl=/usr/share/libctl --with-blas=-L/usr/lib64/blas/reference -lblas  --with-lapack=-L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas  --without-hdf5 --with-inv-symmetry
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
checking for x86_64-pc-linux-gnu-fort77... no
checking for x86_64-pc-linux-gnu-fl32... no
checking for x86_64-pc-linux-gnu-af77... no
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-f90... no
checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether the Fortran 77 compiler works... yes
checking for Fortran 77 compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
checking whether make sets $(MAKE)... yes
*********************** INVERSION SYM. ***********************
checking for sqrt in -lm... yes
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... (cached) -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... (cached)  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for fftw in -ldfftw... yes
checking for rfftw in -ldrfftw... yes
checking for sgemm_ in -L/usr/lib64/blas/reference -lblas ... yes
checking for cheev_ in -L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas ... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for guile... yes
checking for guile-config... yes
checking if linking to guile works... yes
checking for scm_make_smob_type... yes
checking for SCM_SMOB_PREDICATE... yes
checking for SCM_SMOB_DATA... yes
checking for SCM_NEWSMOB... yes
checking how to activate readline in Guile... ice-9 readline
checking for libctl dir... /usr/share/libctl
checking for gen-ctl-io... yes
checking for ctl_get_vector3 in -lctl... yes
checking ctl.h usability... yes
checking ctl.h presence... yes
checking for ctl.h... yes
checking whether libctl version is at least 2.1.1... ok
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for getopt... yes
checking for strncmp... yes
checking whether calling BLAS zdotc works... yes
checking for bash... /bin/bash
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/Makefile
config.status: creating src/util/Makefile
config.status: creating src/matrices/Makefile
config.status: creating src/matrixio/Makefile
config.status: creating src/maxwell/Makefile
config.status: creating mpb-ctl/Makefile
config.status: WARNING:  'mpb-ctl/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating mpb-ctl/mpb.scm
config.status: creating mpb-ctl/mpb-split
config.status: creating utils/Makefile
config.status: WARNING:  'utils/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating src/config.h
 * econf: updating mpb-1.4.2_herm/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2_herm/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2_inv/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2_inv/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating mpb-1.4.2/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpb-1.4.2/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-libctl=/usr/share/libctl --with-blas=-L/usr/lib64/blas/reference -lblas  --with-lapack=-L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas  --without-hdf5 --with-hermitian-eps
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
checking for x86_64-pc-linux-gnu-fort77... no
checking for x86_64-pc-linux-gnu-fl32... no
checking for x86_64-pc-linux-gnu-af77... no
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-f90... no
checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether the Fortran 77 compiler works... yes
checking for Fortran 77 compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for a BSD-compatible install... /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
checking whether make sets $(MAKE)... yes
*********************** HERMITIAN EPS. ***********************
checking for sqrt in -lm... yes
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... (cached) -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... (cached)  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../.. -lgfortran -lm -lquadmath
checking for fftw in -ldfftw... yes
checking for sgemm_ in -L/usr/lib64/blas/reference -lblas ... yes
checking for cheev_ in -L/usr/lib64/lapack/reference -L/usr/lib64/blas/reference -llapack -lblas ... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for guile... yes
checking for guile-config... yes
checking if linking to guile works... yes
checking for scm_make_smob_type... yes
checking for SCM_SMOB_PREDICATE... yes
checking for SCM_SMOB_DATA... yes
checking for SCM_NEWSMOB... yes
checking how to activate readline in Guile... ice-9 readline
checking for libctl dir... /usr/share/libctl
checking for gen-ctl-io... yes
checking for ctl_get_vector3 in -lctl... yes
checking ctl.h usability... yes
checking ctl.h presence... yes
checking for ctl.h... yes
checking whether libctl version is at least 2.1.1... ok
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for getopt... yes
checking for strncmp... yes
checking whether calling BLAS zdotc works... yes
checking for bash... /bin/bash
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/Makefile
config.status: creating src/util/Makefile
config.status: creating src/matrices/Makefile
config.status: creating src/matrixio/Makefile
config.status: creating src/maxwell/Makefile
config.status: creating mpb-ctl/Makefile
config.status: WARNING:  'mpb-ctl/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating mpb-ctl/mpb.scm
config.status: creating mpb-ctl/mpb-split
config.status: creating utils/Makefile
config.status: WARNING:  'utils/Makefile.in' seems to ignore the --datarootdir setting
config.status: creating src/config.h
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2 ...
/var/tmp/portage/sci-physics/mpb-1.4.2-r2/temp/environment: line 3030: cd: /var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2.: No such file or directory
make -j1 -C mpb-ctl ctl-io.c 
make: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/mpb-ctl'
gen-ctl-io mpb.scm /usr/share/libctl
make: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/mpb-ctl'
make -j1 
Making all in src/util
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/util'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../.. -I.   -pthread -c -march=native -O2 -pipe debug_malloc.c -o debug_malloc.o
debug_malloc.c:35:16: warning: ‘my_malloc_hook’ initialized and declared ‘extern’
 extern void* (*my_malloc_hook) (size_t) = 0;
                ^
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../.. -I.   -pthread -c -march=native -O2 -pipe mpi_utils.c -o mpi_utils.o
rm -f util.a
ar r util.a debug_malloc.o mpi_utils.o
ar: creating util.a
x86_64-pc-linux-gnu-ranlib util.a
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/util'
Making all in src/matrices
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/matrices'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe eigensolver.c -o eigensolver.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe eigensolver_utils.c -o eigensolver_utils.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe evectmatrix.c -o evectmatrix.o
evectmatrix.c:29:15: warning: ‘evectmatrix_flops’ initialized and declared ‘extern’
 extern double evectmatrix_flops = 0;
               ^
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe sqmatrix.c -o sqmatrix.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe matrices.c -o matrices.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe blasglue.c -o blasglue.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe minpack2-linmin.c -o minpack2-linmin.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe linmin.c -o linmin.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I. -I.   -pthread -c -march=native -O2 -pipe eigensolver_davidson.c -o eigensolver_davidson.o
rm -f matrices.a
ar r matrices.a eigensolver.o eigensolver_utils.o evectmatrix.o sqmatrix.o matrices.o blasglue.o minpack2-linmin.o linmin.o eigensolver_davidson.o
ar: creating matrices.a
x86_64-pc-linux-gnu-ranlib matrices.a
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/matrices'
Making all in src/maxwell
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/maxwell'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I.   -pthread -c -march=native -O2 -pipe maxwell.c -o maxwell.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I.   -pthread -c -march=native -O2 -pipe maxwell_op.c -o maxwell_op.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I.   -pthread -c -march=native -O2 -pipe maxwell_pre.c -o maxwell_pre.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I.   -pthread -c -march=native -O2 -pipe maxwell_eps.c -o maxwell_eps.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I.   -pthread -c -march=native -O2 -pipe maxwell_constraints.c -o maxwell_constraints.o
rm -f maxwell.a
ar r maxwell.a maxwell.o maxwell_op.o maxwell_pre.o maxwell_eps.o maxwell_constraints.o
ar: creating maxwell.a
x86_64-pc-linux-gnu-ranlib maxwell.a
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/maxwell'
Making all in src/matrixio
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/matrixio'
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I. -I.   -pthread -c -march=native -O2 -pipe fieldio.c -o fieldio.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I. -I.   -pthread -c -march=native -O2 -pipe evectmatrixio.c -o evectmatrixio.o
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I../../src/util -I../../src/matrices -I. -I.   -pthread -c -march=native -O2 -pipe matrixio.c -o matrixio.o
rm -f matrixio.a
ar r matrixio.a fieldio.o evectmatrixio.o matrixio.o
ar: creating matrixio.a
x86_64-pc-linux-gnu-ranlib matrixio.a
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/src/matrixio'
Making all in tests
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/tests'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/tests'
Making all in mpb-ctl
make[1]: Entering directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/mpb-ctl'
cp -f /usr/share/libctl/base/main.c main.c
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe main.c -o main.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe ctl-io.c -o ctl-io.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe mpb.c -o mpb.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe epsilon.c -o epsilon.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe fields.c -o fields.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe epsilon_file.c -o epsilon_file.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe matrix-smob.c -o matrix-smob.o
x86_64-pc-linux-gnu-gcc -c -DHAVE_CONFIG_H -DCTL_SCM='"'/usr/share/libctl/base/ctl.scm'"' -DINCLUDE_SCM='"'/usr/share/libctl/base/include.scm'"' -DSPEC_SCM='"'/usr/share/libctl/specs/mpb.scm'"' -DVERSION_STRING='"'"MIT Photonic Bands 1.4.2, Copyright (C) 1999-2001 by MIT."'"' -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 -I. -I. -I../src/util -I../src/matrices -I../src/matrixio -I../src/maxwell   -pthread -march=native -O2 -pipe field-smob.c -o field-smob.o
field-smob.c: In function ‘cur_fieldp’:
field-smob.c:160:14: error: too few arguments to function ‘gh_symbol2newstr’
    char *s = gh_symbol2newstr(obj);
              ^
In file included from ctl-io.h:7:0,
                 from field-smob.h:21,
                 from field-smob.c:27:
/usr/include/guile/gh.h:110:15: note: declared here
 SCM_API char *gh_symbol2newstr(SCM sym, size_t *lenp);
               ^
Makefile:129: recipe for target 'field-smob.o' failed
make[1]: *** [field-smob.o] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2/mpb-ctl'
Makefile:76: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
 * ERROR: sci-physics/mpb-1.4.2-r2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-physics/mpb-1.4.2-r2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-physics/mpb-1.4.2-r2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-physics:mpb-1.4.2-r2:20160227-124710.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2'
 * S: '/var/tmp/portage/sci-physics/mpb-1.4.2-r2/work/mpb-1.4.2'