sci-libs/atlas-3.11.38-r1 build.log

atlas-3.11.38-r1-build.log (text/plain), 9.10 KB, created by Thomas Beutin on 2016-01-26 16:12:17 UTC

[32;01m * [39;49;00mPackage:    sci-libs/atlas-3.11.38-r1
[32;01m * [39;49;00mRepository: science
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc fortran kernel_linux lapack threads userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
 [32;01m*[0m Using following Fortran compiler:
 [32;01m*[0m   F77: x86_64-pc-linux-gnu-gfortran
 [32;01m*[0m   FC:  x86_64-pc-linux-gnu-gfortran
 [32;01m*[0m Determining the location of the kernel source code
 [32;01m*[0m Found kernel source directory:
 [32;01m*[0m     /usr/src/linux
 [32;01m*[0m Found kernel object directory:
 [32;01m*[0m     /lib/modules/4.1.15-gentoo-r1/build
 [32;01m*[0m Found sources for kernel version:
 [32;01m*[0m     4.1.15-gentoo-r1
 [32;01m*[0m Checking for suitable kernel configuration options...
[A[203C [34;01m[ [32;01mok[34;01m ][0m
>>> Unpacking source...
>>> Unpacking atlas3.11.38.tar.bz2 to /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work
>>> Unpacking lapack-3.6.0.tgz to /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work
>>> Preparing source in /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS ...
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -c /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/atlconf_misc.c
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -o xconfig /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/config.c atlconf_misc.o 
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/cc5nkJNq.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
./xconfig -d s /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS/ -d b /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared  -D c -DWALL -C acg 'gcc' -F acg '-O2 -pipe' -Ss pmake '$(MAKE) -j66' -t -1 -Si omp 0 -b 64 -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-O2 -pipe' -Si latune 1 -Si lapackref 1 -Fa alg -fPIC
probe_OS.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

OS configured as Linux (1)
probe_asm.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Assembly configured as GAS_x8664 (2)
probe_vec.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Vector ISA Extension configured as  AVXMAC (4,1008)
probe_arch.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/ccP9xxAt.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Architecture configured as  AMDDRIVER (40)
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/ccz9sYbW.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'

Clock rate configured as 2800Mhz

Maximum number of threads configured as  64
Cannot detect CPU throttling.
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -o xisgcc /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/IsGcc.c atlconf_misc.o 
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/ccb9USUd.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -c /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/probe_comp.c
x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -o xprobe_comp probe_comp.o atlconf_misc.o 
probe_comp.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
rm -f config1.out
make atlas_run atldir=/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared exe=xprobe_comp redir=config1.out \
                args="-v 0 -o atlconf.txt -O 1 -A 40 -Si nof77 0 -V 1008  -C ic 'gcc' -F ic '-O2 -pipe' -Fa ic '-fPIC' -C sm 'gcc' -F sm '-O2 -pipe' -Fa sm '-fPIC' -C dm 'gcc' -F dm '-O2 -pipe' -Fa dm '-fPIC' -C sk 'gcc' -F sk '-O2 -pipe' -Fa sk '-fPIC' -C dk 'gcc' -F dk '-O2 -pipe' -Fa dk '-fPIC' -C xc 'gcc' -F xc '-O2 -pipe' -Fa xc '-fPIC' -C gc 'gcc' -F gc '-O2 -pipe' -Fa gc '-fPIC' -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-O2 -pipe' -Fa if '-fPIC' -b 64 -d b /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared"
make[1]: Entering directory '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared'
cd /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 40 -Si nof77 0 -V 1008  -C ic 'gcc' -F ic '-O2 -pipe' -Fa ic '-fPIC' -C sm 'gcc' -F sm '-O2 -pipe' -Fa sm '-fPIC' -C dm 'gcc' -F dm '-O2 -pipe' -Fa dm '-fPIC' -C sk 'gcc' -F sk '-O2 -pipe' -Fa sk '-fPIC' -C dk 'gcc' -F dk '-O2 -pipe' -Fa dk '-fPIC' -C xc 'gcc' -F xc '-O2 -pipe' -Fa xc '-fPIC' -C gc 'gcc' -F gc '-O2 -pipe' -Fa gc '-fPIC' -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-O2 -pipe' -Fa if '-fPIC' -b 64 -d b /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared > config1.out
probe_f2c.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared'
cat config1.out
REPORTED: res=/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/libgfortran.so

x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include  -g -w -o xspew /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/SpewMakeInc.c atlconf_misc.o \
               
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/ccRBA4py.o: In function `ATL_tmpnam':
/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/include/atlas_sys.h:224: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
xspew: /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS//CONFIG/src/SpewMakeInc.c:577: GetArchDef: Assertion `i < l' failed.
ERROR 6 IN SYSCMND: './xspew -v 0 -O 1 -A 40 -m 2800 -s 2 -V 1008 -b 64 -f 0 -d s '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS/' -d b '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared' -D c '-DWALL -DATL_FULL_LAPACK' -D f '-DAdd_ -DF77_INTEGER=int -DStringSunStyle'  -C ic '/usr/bin/gcc' -F ic '-O2 -pipe -fPIC -m64' -C sm '/usr/bin/gcc' -F sm '-O2 -pipe -fPIC -m64' -C dm '/usr/bin/gcc' -F dm '-O2 -pipe -fPIC -m64' -C sk '/usr/bin/gcc' -F sk '-O2 -pipe -fPIC -m64' -C dk '/usr/bin/gcc' -F dk '-O2 -pipe -fPIC -m64' -C xc '/usr/bin/gcc' -F xc '-O2 -pipe -fPIC -m64' -C gc '/usr/bin/gcc' -F gc '-O2 -pipe -fPIC -m64' -C if '/usr/bin/x86_64-pc-linux-gnu-gfortran' -F if '-O2 -pipe -fPIC -m64' -Si archdef 1 -Si ieee 1 -Si bozol1 0 -Si latune 1 -Si nof77 0 -Si fko 0 -o Make.inc -t 64 -Ss pmake '$(MAKE) -j66' -Ss f77lib '-L/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3 -lgfortran ' -Si lapackref 1 -Fa gc '-fPIC''
xconfig exited with 6
 [31;01m*[0m ERROR: sci-libs/atlas-3.11.38-r1::science failed (configure phase):
 [31;01m*[0m   configure in /var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  133:  Called src_configure
 [31;01m*[0m   environment, line 3067:  Called atlas_configure 'shared' '-Fa alg -fPIC'
 [31;01m*[0m   environment, line 3062:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m           "${S}"/configure ${myconf[@]} || die "configure in ${confdir} failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/atlas-3.11.38-r1::science'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/atlas-3.11.38-r1::science'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS_shared'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/atlas-3.11.38-r1/work/ATLAS'