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Gentoo's Bugzilla – Attachment 419314 Details for
Bug 568386
[sage-on-gentoo overlay] dev-python/numpy-1.10.2-r1 - source.c:(.text+0xad): undefined reference to `cblas_ddot'
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build.log
build.log (text/plain), 10.34 KB, created by
Juergen Rose
on 2015-12-16 07:10:31 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2015-12-16 07:10:31 UTC
Size:
10.34 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: dev-python/numpy-1.10.2-r1 >[32;01m * [39;49;00mRepository: sage-on-gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org python@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 doc elibc_glibc kernel_linux lapack python_targets_python2_7 python_targets_python3_4 userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox userpriv usersandbox > [32;01m*[0m Using following Fortran compiler: > [32;01m*[0m F77: x86_64-pc-linux-gnu-gfortran > [32;01m*[0m FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking numpy-1.10.2.tar.gz to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work >>>> Unpacking numpy-html-1.9.1.zip to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work >>>> Unpacking numpy-ref-1.9.1.pdf to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work >unpack numpy-ref-1.9.1.pdf: file format not recognized. Ignoring. >>>> Unpacking numpy-user-1.9.1.pdf to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work >unpack numpy-user-1.9.1.pdf: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/dev-python/numpy-1.10.2-r1/work >>>> Preparing source in /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2 ... > [32;01m*[0m Applying numpy-1.9.2-no-hardcode-blas.patch ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying numpy-1.10.1-asarray_conversion.patch ... >[A[139C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Will copy sources from /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2 > [32;01m*[0m python2_7: copying to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7 > [32;01m*[0m python3_4: copying to /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python3_4 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2 ... > [32;01m*[0m python2_7: running distutils-r1_run_phase python_compile >/usr/bin/python2.7 setup.py build -j 5 config_fc --noopt --noarch --fcompiler=gnu95 >Running from numpy source directory. >/usr/lib64/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_suite' > warnings.warn(msg) >blas_opt_info: >system_info: > NOT AVAILABLE > >/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py:1632: UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) >blas_info: >/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py:616: UserWarning: Specified path is invalid. > warnings.warn('Specified path %s is invalid.' % d) >C compiler: cc > >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1 >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp >creating /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp >compile options: '-c' >cc: /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.c >cc /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.o -L/usr/lib64/blas/reference -lblas,cblas -o /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/a.out >/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lblas,cblas >collect2: error: ld returned 1 exit status >/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lblas,cblas >collect2: error: ld returned 1 exit status >cc /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.o -L/usr/lib64/blas/reference -lblas -o /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/a.out >/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.o: In function `main': >source.c:(.text+0xad): undefined reference to `cblas_ddot' >collect2: error: ld returned 1 exit status >/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.o: In function `main': >source.c:(.text+0xad): undefined reference to `cblas_ddot' >collect2: error: ld returned 1 exit status >Traceback (most recent call last): > File "setup.py", line 263, in <module> > setup_package() > File "setup.py", line 255, in setup_package > setup(**metadata) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/core.py", line 135, in setup > config = configuration() > File "setup.py", line 156, in configuration > config.add_subpackage('numpy') > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 1002, in add_subpackage > caller_level = 2) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 971, in get_subpackage > caller_level = caller_level + 1) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "numpy/setup.py", line 11, in configuration > config.add_subpackage('core') > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 1002, in add_subpackage > caller_level = 2) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 971, in get_subpackage > caller_level = caller_level + 1) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/misc_util.py", line 908, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "numpy/core/setup.py", line 837, in configuration > blas_info = get_info('blas_opt', 0) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 353, in get_info > return cl().get_info(notfound_action) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 543, in get_info > self.calc_info() > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 1637, in calc_info > blas_info = get_info('blas') > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 353, in get_info > return cl().get_info(notfound_action) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 543, in get_info > self.calc_info() > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 1671, in calc_info > lib = self.has_cblas(info) > File "/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7/numpy/distutils/system_info.py", line 1714, in has_cblas > extra_postargs=info.get('extra_link_args', [])) > File "/usr/lib64/python2.7/distutils/ccompiler.py", line 700, in link_executable > debug, extra_preargs, extra_postargs, None, target_lang) > File "/usr/lib64/python2.7/distutils/unixccompiler.py", line 203, in link > raise LinkError, msg >distutils.errors.LinkError: Command "cc /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/source.o -L/usr/lib64/blas/reference -lblas -o /var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/tmpo42gFp/a.out" failed with exit status 1 > [31;01m*[0m ERROR: dev-python/numpy-1.10.2-r1::sage-on-gentoo failed (compile phase): > [31;01m*[0m (no error message) > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 133: Called src_compile > [31;01m*[0m environment, line 4328: Called distutils-r1_src_compile > [31;01m*[0m environment, line 1262: Called _distutils-r1_run_foreach_impl 'python_compile' > [31;01m*[0m environment, line 426: Called python_foreach_impl 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 3719: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2800: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2798: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 878: Called distutils-r1_run_phase 'python_compile' > [31;01m*[0m environment, line 1255: Called python_compile > [31;01m*[0m environment, line 3307: Called distutils-r1_python_compile '-j' '5' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' > [31;01m*[0m environment, line 1127: Called esetup.py 'build' '-j' '5' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95' > [31;01m*[0m environment, line 1750: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${@}" || die "${die_args[@]}" || return ${?} > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=dev-python/numpy-1.10.2-r1::sage-on-gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-python/numpy-1.10.2-r1::sage-on-gentoo'`. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-python/numpy-1.10.2-r1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2-python2_7' > [31;01m*[0m S: '/var/tmp/portage/dev-python/numpy-1.10.2-r1/work/numpy-1.10.2'
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bug 568386
: 419314