build.log

build.log (text/x-log), 3.16 KB, created by Martin Mokrejš on 2015-11-20 22:01:45 UTC

[32;01m * [39;49;00mPackage:    sci-biology/repeatmasker-4.0.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
[32;01m * [39;49;00mFEATURES:   nostrip preserve-libs sandbox splitdebug userpriv usersandbox
>>> Unpacking source...
>>> Unpacking RepeatMasker-open-4-0-1.tar.gz to /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work
>>> Preparing source in /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker ...



RepeatMasker Configuration Program

This program assists with the configuration of the
RepeatMasker program.  The next set of screens will ask
you to enter information pertaining to your system
configuration.  At the end of the program your RepeatMasker
installation will be ready to use.



<PRESS ENTER TO CONTINUE>



**PERL PROGRAM**

  This is the full path to the Perl interpreter.
  e.g. /usr/local/bin/perl or enter "env" if you prefer to use
  the "/usr/bin/env perl" mechanism to locate perl.










Enter path [ /usr/bin/perl ]: 


**REPEATMASKER INSTALLATION DIRECTORY**

  This is the path to the directory where
  the RepeatMasker program has been installed.











Enter path [ /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker ]: 
Your RepeatMasker installation is missing a library file.
RepeatMasker requires a minimal set of library sequences to run
properly.  Please check that all files were extracted from the
distribution before re-running the configure program.

sed: can't read /var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker/RepeatMaskerConfig.pm: No such file or directory
 [31;01m*[0m ERROR: sci-biology/repeatmasker-4.0.1::gentoo failed (configure phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  93:  Called src_configure
 [31;01m*[0m   environment, line 225:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-biology/repeatmasker-4.0.1::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-biology/repeatmasker-4.0.1::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-biology/repeatmasker-4.0.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/repeatmasker-4.0.1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker'
 [31;01m*[0m S: '/var/tmp/portage/sci-biology/repeatmasker-4.0.1/work/RepeatMasker'