Config.log from /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/lib/ccif

config.log (text/x-log), 26.14 KB, created by David Kredba on 2015-08-08 13:59:00 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure --enable-shared-lib=yes --libdir=/usr/lib64 --srcdir=/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/lib/ccif --cache-file=/tmp/22207.cache_file --enable-shared-lib

## --------- ##
## Platform. ##
## --------- ##

hostname = srv5
uname -m = x86_64
uname -r = 4.1.4-gentoo
uname -s = Linux
uname -v = #1 SMP PREEMPT Sat Aug 8 10:38:44 CEST 2015

/usr/bin/uname -p = Intel(R) Core(TM)2 Quad CPU Q9550 @ 2.83GHz
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/share/dbccp4i/bin
PATH: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/ccp4i/bin
PATH: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/libexec/ccp4/bin/
PATH: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/etc
PATH: /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/temp/python2.7/bin
PATH: /usr/lib/portage/python2.7/ebuild-helpers/xattr
PATH: /usr/lib/portage/python2.7/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/5.2.0
PATH: /opt/eagle/bin
PATH: /opt/ekopath/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1646: loading cache /tmp/22207.cache_file
configure:1792: checking build system type
configure:1810: result: x86_64-pc-linux-gnu
configure:1832: checking host system type
configure:1847: result: x86_64-pc-linux-gnu
configure:1921: checking for gcc
configure:1948: result: x86_64-pc-linux-gnu-gcc
configure:2186: checking for C compiler version
configure:2193: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 5.2.0 p1.0) 5.2.0
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2196: $? = 0
configure:2203: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/5.2.0/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/5.2.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-5.2.0/work/gcc-5.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/5.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/5.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/5.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/5.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/5.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/5.2.0/include/g++-v5 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/5.2.0/python --enable-languages=c,c++,java,go,objc,obj-c++,fortran,ada --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 5.2.0 p1.0' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --enable-libcilkrts --enable-lto --with-isl --disable-isl-version-check --enable-libsanitizer
Thread model: posix
gcc version 5.2.0 (Gentoo 5.2.0 p1.0) 
configure:2206: $? = 0
configure:2213: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:2216: $? = 1
configure:2239: checking for C compiler default output file name
configure:2266: x86_64-pc-linux-gnu-gcc -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC   conftest.c  >&5
configure:2269: $? = 0
configure:2307: result: a.out
configure:2324: checking whether the C compiler works
configure:2334: ./a.out
configure:2337: $? = 0
configure:2354: result: yes
configure:2361: checking whether we are cross compiling
configure:2363: result: no
configure:2366: checking for suffix of executables
configure:2373: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC   conftest.c  >&5
configure:2376: $? = 0
configure:2400: result: 
configure:2406: checking for suffix of object files
configure:2432: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:2435: $? = 0
configure:2458: result: o
configure:2462: checking whether we are using the GNU C compiler
configure:2491: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:2497: $? = 0
configure:2514: result: yes
configure:2519: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:2549: x86_64-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:2555: $? = 0
configure:2654: result: yes
configure:2671: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:2745: x86_64-pc-linux-gnu-gcc  -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:2751: $? = 0
configure:2774: result: none needed
configure:2792: checking for function prototypes
configure:2795: result: yes
configure:4234: checking for ranlib
configure:4261: result: x86_64-pc-linux-gnu-ranlib
configure:4291: checking for gawk
configure:4307: found /usr/bin/gawk
configure:4318: result: gawk
configure:4331: checking for nm
configure:4350: found /usr/bin/nm
configure:4363: result: /usr/bin/nm
configure:4442: checking how to run the C preprocessor
configure:4482: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:4488: $? = 0
configure:4519: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:4525: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4558: result: x86_64-pc-linux-gnu-gcc -E
configure:4587: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:4593: $? = 0
configure:4624: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:4630: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4668: checking for grep that handles long lines and -e
configure:4742: result: /bin/grep
configure:4747: checking for egrep
configure:4825: result: /bin/grep -E
configure:4830: checking for ANSI C header files
configure:4860: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:4866: $? = 0
configure:4965: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC   conftest.c  >&5
configure:4968: $? = 0
configure:4974: ./conftest
configure:4977: $? = 0
configure:4994: result: yes
configure:5018: checking for sys/types.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for sys/stat.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for stdlib.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for string.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for memory.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for strings.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for inttypes.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for stdint.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5018: checking for unistd.h
configure:5039: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5045: $? = 0
configure:5061: result: yes
configure:5091: checking signal.h usability
configure:5108: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5114: $? = 0
configure:5128: result: yes
configure:5132: checking signal.h presence
configure:5147: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:5153: $? = 0
configure:5167: result: yes
configure:5195: checking for signal.h
configure:5203: result: yes
configure:5091: checking time.h usability
configure:5108: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5114: $? = 0
configure:5128: result: yes
configure:5132: checking time.h presence
configure:5147: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:5153: $? = 0
configure:5167: result: yes
configure:5195: checking for time.h
configure:5203: result: yes
configure:5091: checking standards.h usability
configure:5108: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
conftest.c:56:23: fatal error: standards.h: No such file or directory
compilation terminated.
configure:5114: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_TIME_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <standards.h>
configure:5128: result: no
configure:5132: checking standards.h presence
configure:5147: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:23:23: fatal error: standards.h: No such file or directory
compilation terminated.
configure:5153: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_TIME_H 1
| /* end confdefs.h.  */
| #include <standards.h>
configure:5167: result: no
configure:5195: checking for standards.h
configure:5203: result: no
configure:5091: checking assert.h usability
configure:5108: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5114: $? = 0
configure:5128: result: yes
configure:5132: checking assert.h presence
configure:5147: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:5153: $? = 0
configure:5167: result: yes
configure:5195: checking for assert.h
configure:5203: result: yes
configure:5219: checking for unistd.h
configure:5225: checking for unistd.h
configure:5230: result: yes
configure:5360: result: yes
configure:5372: checking for an ANSI C-conforming const
configure:5447: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC  conftest.c >&5
configure:5453: $? = 0
configure:5468: result: yes
configure:5957: checking for standards.h
configure:5963: result: no
configure:6092: checking for working non-fixed mmap
configure:6181: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi   conftest.c  >&5
conftest.c:48:8: warning: conflicting types for built-in function 'malloc'
 char  *malloc();
        ^
conftest.c: In function 'main':
conftest.c:80:7: warning: incompatible implicit declaration of built-in function 'exit'
       exit(1);
       ^
conftest.c:80:7: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:6184: $? = 0
configure:6190: ./conftest
configure:6193: $? = 0
configure:6209: result: yes
configure:6225: checking whether strdup declared in string.h
configure:6252: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi   conftest.c  >&5
conftest.c:29:43: error: conflicting types for 'strdup'
                                    float *strdup (const char *s1);
                                           ^
In file included from conftest.c:28:0:
/usr/include/string.h:175:14: note: previous declaration of 'strdup' was here
 extern char *strdup (const char *__s)
              ^
configure:6258: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_TIME_H 1
| #define HAVE_ASSERT_H 1
| #define UPDATE_WARN 1
| #define USER_ZZMODE_STACK 1
| #define _XOPEN_SOURCE 500
| #define HAVE_MMAP 1
| /* end confdefs.h.  */
| #include <string.h>
|                                    float *strdup (const char *s1);
| int
| main ()
| {
|  float *f = strdup("hello");
|   ;
|   return 0;
| }
configure:6278: result: yes
configure:6305: checking regex.h usability
configure:6322: x86_64-pc-linux-gnu-gcc -c -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi  conftest.c >&5
configure:6328: $? = 0
configure:6342: result: yes
configure:6346: checking regex.h presence
configure:6361: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:6367: $? = 0
configure:6381: result: yes
configure:6409: checking for regex.h
configure:6416: result: yes
configure:6450: checking out regular expression package
configure:6499: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi -DHAVE_REGEX_H   conftest.c  >&5
conftest.c: In function 'main':
conftest.c:47:21: warning: incompatible implicit declaration of built-in function 'exit'
                     exit( regcomp(&preg, "a*", REG_EXTENDED) );
                     ^
conftest.c:47:21: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:6502: $? = 0
configure:6508: ./conftest
configure:6511: $? = 0
configure:6513: result: ok
configure:6562: checking whether we need to define strerror
configure:6596: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi   conftest.c  >&5
conftest.c: In function 'main':
conftest.c:35:36: warning: incompatible implicit declaration of built-in function 'exit'
                                    exit(0);
                                    ^
conftest.c:35:36: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:6599: $? = 0
configure:6605: ./conftest
configure:6608: $? = 0
configure:6627: result: no
configure:6641: checking for old-style realloc
configure:6677: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi   conftest.c  >&5
conftest.c: In function 'main':
conftest.c:35:52: warning: incompatible implicit declaration of built-in function 'realloc'
                                    ptr1 = (char *) realloc(ptr2, 1024);
                                                    ^
conftest.c:35:52: note: include '<stdlib.h>' or provide a declaration of 'realloc'
conftest.c:36:36: warning: incompatible implicit declaration of built-in function 'exit'
                                    exit (ptr1==ptr2);  /* exit(0) => realloc is standard */
                                    ^
conftest.c:36:36: note: include '<stdlib.h>' or provide a declaration of 'exit'
configure:6680: $? = 0
configure:6686: ./conftest
configure:6689: $? = 0
configure:6708: result: no
configure:6719: checking for old BSD sprintf
configure:6755: x86_64-pc-linux-gnu-gcc -o conftest -O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi   conftest.c  >&5
conftest.c: In function 'main':
conftest.c:36:36: warning: incompatible implicit declaration of built-in function 'exit'
                                    exit( buf != (char *) res );
                                    ^
conftest.c:36:36: note: include '<stdlib.h>' or provide a declaration of 'exit'
conftest.c:36:49: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
                                    exit( buf != (char *) res );
                                                 ^
configure:6758: $? = 0
configure:6764: ./conftest
configure:6767: $? = 1
configure: program exited with status 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PROTOTYPES 1
| #define __PROTOTYPES 1
| #define __USE_PROTOS 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_TIME_H 1
| #define HAVE_ASSERT_H 1
| #define UPDATE_WARN 1
| #define USER_ZZMODE_STACK 1
| #define _XOPEN_SOURCE 500
| #define HAVE_MMAP 1
| #define STRDUP_DECL 1
| #define HAVE_REGEX_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| int
| main ()
| {
| char buf[50]; int res;
|                                    res = sprintf(buf, "%d" ,20);
|                                    exit( buf != (char *) res );
| 
|   ;
|   return 0;
| }
configure:6786: result: no
configure:6906: updating cache /tmp/22207.cache_file
configure:6972: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by config.status, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on srv5

config.status:605: creating shlib.csh
config.status:605: creating shlib.sh
config.status:605: creating Makefile

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=x86_64-pc-linux-gnu-gcc
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_assert_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_regex_h=yes
ac_cv_header_signal_h=yes
ac_cv_header_standards_h=no
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_GREP=/bin/grep
ac_cv_path_NM=/usr/bin/nm
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_ac_ct_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_ac_ct_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ccif_cv_func_mmap_nonfixed=yes
ccif_cv_func_realloc_old=no
ccif_cv_func_sprintf_oldbsd=no
ccif_cv_func_strerror_needed=no
ccif_cv_header_unistd_h=yes
ccif_cv_strdup_decl=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

ARPAUSE='true'
AWK='gawk'
CC='x86_64-pc-linux-gnu-gcc'
CCIF_LIB_DIR='/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r16/work/ccp4-6.1.3/lib/ccif'
CFLAGS='-O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -DG77 -DPROTOTYPE -DHAVE_G2C_H -fPIC -ansi '
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=''
DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPROTOTYPES=1 -D__PROTOTYPES=1 -D__USE_PROTOS=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_SIGNAL_H=1 -DHAVE_TIME_H=1 -DHAVE_ASSERT_H=1 -DUPDATE_WARN=1 -DUSER_ZZMODE_STACK=1 -D_XOPEN_SOURCE=500 -DHAVE_MMAP=1 -DSTRDUP_DECL=1 -DHAVE_REGEX_H=1'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ERRNO_DEF_O=''
EXEEXT=''
FC='FC = x86_64-pc-linux-gnu-gfortran'
FFLAGS='-O2 -ggdb -pipe -march=core2 -frecord-gcc-switches -fno-second-underscore -fno-globals -fno-automatic -fPIC'
GREP='/bin/grep'
INSTALL_DATA='cp -p'
L='lib$(LIBNAME).a'
LDFLAGS='  -lm'
LIBNAME='ccif'
LIBOBJS=''
LIBS='-L`pwd` -l$(LIBNAME) -lm '
LNAME='ccif'
LTLIBOBJS=''
NM='/usr/bin/nm --demangle --extern-only --format=sysv'
OBJEXT='o'
OPTIM='-O2'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
RANLIB='x86_64-pc-linux-gnu-ranlib'
RXDISPENCER=''
RX_LFLAG=''
SHARED_LIB_CFLAGS=''
SHARED_LIB_CMD='true'
SHARED_LIB_EXPORTS='lib$(LNAME).exp'
SHARED_LIB_EXPORTS_CMD=''
SHARED_LIB_FLAGS='-Wl,-O1 -Wl,--as-needed'
SHARED_LIB_NAME='dummy.so'
SHARED_LIB_PATH=''
SHELL='/bin/sh'
SO_LOC_VAR=''
ac_ct_CC='x86_64-pc-linux-gnu-gcc'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define PACKAGE_STRING ""
#define PACKAGE_BUGREPORT ""
#define PROTOTYPES 1
#define __PROTOTYPES 1
#define __USE_PROTOS 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SIGNAL_H 1
#define HAVE_TIME_H 1
#define HAVE_ASSERT_H 1
#define UPDATE_WARN 1
#define USER_ZZMODE_STACK 1
#define _XOPEN_SOURCE 500
#define HAVE_MMAP 1
#define STRDUP_DECL 1
#define HAVE_REGEX_H 1

configure: exit 0