Attachment 405614 Details for Bug 553104 – build.log

build.log

build.log (text/plain), 40.85 KB, created by Piotr Szymaniak on 2015-06-23 22:20:58 UTC

(hide)

Description:

Filename:

MIME Type:

Creator: Piotr Szymaniak

Created: 2015-06-23 22:20:58 UTC

Size: 40.85 KB

patch

obsolete

> * Package:    sci-chemistry/openbabel-2.3.2
> * Repository: gentoo
> * Maintainer: sci-chemistry@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux openmp userland_GNU
> * FEATURES:   preserve-libs sandbox userpriv usersandbox
> * Applying openbabel-2.3.2-test_lib_path.patch ...
> [ ok ]
>>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build"
>cmake --no-warn-unused-cli -C /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DOPENBABEL_USE_SYSTEM_INCHI=ON -DENABLE_OPENMP=ON -DBUILD_GUI=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/gentoo_rules.cmake -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2
>Not searching for unused variables given on the command line.
>loading initial cache file /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/gentoo_common_config.cmake
>-- The C compiler identification is GNU 5.1.0
>-- The CXX compiler identification is GNU 5.1.0
>-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
>-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
>-- Detecting C compiler ABI info
>-- Detecting C compiler ABI info - done
>-- Detecting C compile features
>-- Detecting C compile features - done
>-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
>-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
>-- Detecting CXX compiler ABI info
>-- Detecting CXX compiler ABI info - done
>-- Detecting CXX compile features
>-- Detecting CXX compile features - done
>-- Found INCHI: /usr/lib64/libinchi.so  
>-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.2") 
>-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.8") 
>-- Could NOT find wxWidgets (missing:  wxWidgets_FOUND) 
>-- Looking for conio.h
>-- Looking for conio.h - not found
>-- Looking for sys/time.h
>-- Looking for sys/time.h - found
>-- Looking for time.h
>-- Looking for time.h - found
>-- Looking for strings.h
>-- Looking for strings.h - found
>-- Looking for rpc/xdr.h
>-- Looking for rpc/xdr.h - found
>-- Looking for regex.h
>-- Looking for regex.h - found
>-- Looking for C++ include sstream
>-- Looking for C++ include sstream - found
>-- Looking for rint
>-- Looking for rint - not found
>-- Looking for snprintf
>-- Looking for snprintf - found
>-- Looking for sranddev
>-- Looking for sranddev - not found
>-- Looking for strcasecmp
>-- Looking for strcasecmp - found
>-- Looking for strncasecmp
>-- Looking for strncasecmp - found
>-- Looking for dlopen in dl
>-- Looking for dlopen in dl - found
>-- Looking for sys/types.h
>-- Looking for sys/types.h - found
>-- Looking for stdint.h
>-- Looking for stdint.h - found
>-- Looking for stddef.h
>-- Looking for stddef.h - found
>-- Check size of clock_t
>-- Check size of clock_t - done
>-- Performing Test SCANDIR_NEEDS_CONST
>-- Performing Test SCANDIR_NEEDS_CONST - Failed
>-- Performing Test HAVE_GCC_VISIBILITY
>-- Performing Test HAVE_GCC_VISIBILITY - Success
>-- Try OpenMP C flag = [-fopenmp]
>-- Performing Test OpenMP_FLAG_DETECTED
>-- Performing Test OpenMP_FLAG_DETECTED - Success
>-- Try OpenMP CXX flag = [-fopenmp]
>-- Performing Test OpenMP_FLAG_DETECTED
>-- Performing Test OpenMP_FLAG_DETECTED - Success
>-- Found OpenMP: -fopenmp  
>-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
>-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "0.28") 
>-- checking for module 'cairo'
>--   package 'cairo' not found
>-- Could NOT find Cairo. PNG output will NOT be supported.
>-- Looking for getopt
>-- Looking for getopt - found
>-- GUI will not be built
>CMake Warning (dev) at test/CMakeLists.txt:171 (include):
>  Syntax Warning in cmake code at
>
>    /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14
>
>  Argument not separated from preceding token by whitespace.
>This warning is for project developers.  Use -Wno-dev to suppress it.
>
>CMake Warning (dev) at test/CMakeLists.txt:171 (include):
>  Syntax Warning in cmake code at
>
>    /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31
>
>  Argument not separated from preceding token by whitespace.
>This warning is for project developers.  Use -Wno-dev to suppress it.
>
>CMake Warning (dev) at test/CMakeLists.txt:171 (include):
>  Syntax Warning in cmake code at
>
>    /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25
>
>  Argument not separated from preceding token by whitespace.
>This warning is for project developers.  Use -Wno-dev to suppress it.
>
>CMake Warning (dev) at test/CMakeLists.txt:171 (include):
>  Syntax Warning in cmake code at
>
>    /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39
>
>  Argument not separated from preceding token by whitespace.
>This warning is for project developers.  Use -Wno-dev to suppress it.
>
>-- Found PythonInterp: /usr/bin/python (found version "2.7.10") 
>-- <<< Gentoo configuration >>>
>Build type      Gentoo
>Install path    /usr
>Compiler flags:
>C               -march=nocona -mno-sse3 -O2 -pipe  -fopenmp
>C++             -march=nocona -mno-sse3 -O2 -pipe  -fopenmp
>Linker flags:
>Executable      -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -Wl,-O1 -Wl,--as-needed 
>Module          -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -Wl,-O1 -Wl,--as-needed
>Shared          -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc  -Wl,-O1 -Wl,--as-needed
>
>-- Configuring done
>-- Generating done
>-- Build files have been written to: /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build
>>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build"
>/usr/bin/cmake -H/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2 -B/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build --check-build-system CMakeFiles/Makefile.cmake 0
>/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/CMakeFiles /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/CMakeFiles/progress.marks
>make -f CMakeFiles/Makefile2 all
>make[1]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
>make[2]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2 /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src/CMakeFiles/openbabel.dir/DependInfo.cmake
>Dependee "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src/CMakeFiles/openbabel.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src/CMakeFiles/openbabel.dir/depend.internal".
>Dependee "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src/CMakeFiles/openbabel.dir/depend.internal".
>Scanning dependencies of target openbabel
>make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build
>make[2]: Entering directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/CMakeFiles 
>/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/CMakeFiles 33
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>Building CXX object src/CMakeFiles/openbabel.dir/alias.o
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>[  3%] [  3%] [  3%] cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/alias.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp
>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/atom.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/atom.cpp
>Building CXX object src/CMakeFiles/openbabel.dir/base.o
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>Building CXX object src/CMakeFiles/openbabel.dir/builder.o
>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/base.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/base.cpp
>Building CXX object src/CMakeFiles/openbabel.dir/canon.o
>[  4%] cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bitvec.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/bitvec.cpp
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>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/builder.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/builder.cpp
>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/canon.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/canon.cpp
>cd /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/src && /usr/bin/x86_64-pc-linux-gnu-g++  -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS  -DNDEBUG -march=nocona -mno-sse3 -O2 -pipe  -fopenmp -fPIC -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/include -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/data -I/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include -I/usr/include/eigen3    -DOB_MODULE_PATH="\"/usr/lib64/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/bondtyper.o -c /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/bondtyper.cpp
>/usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build/CMakeFiles 
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>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/shared_ptr.h:27:14:[m[K [01;31m[Kerror: [m[Kâ[01m[Kstd::tr1[m[Kâ has not been declared
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>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/shared_ptr.h:27:14:[m[K [01;31m[Kerror: [m[Kâ[01m[Kstd::tr1[m[Kâ has not been declared
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>[01;32m[K              ^[m[K
>In file included from [01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:17:0[m[K:
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:47:[m[K [01;31m[Kerror: [m[Kâ[01m[Kshared_ptr[m[Kâ was not declared in this scope
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                               ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:73:[m[K [01;31m[Kerror: [m[Ktemplate argument 2 is invalid
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                         ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:75:[m[K [01;31m[Kerror: [m[Ktemplate argument 1 is invalid
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                           ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:75:[m[K [01;31m[Kerror: [m[Ktemplate argument 2 is invalid
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:77:[m[K [01;31m[Kerror: [m[Kexpected unqualified-id before â[01m[K>[m[Kâ token
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                             ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:119:24:[m[K [01;31m[Kerror: [m[Kâ[01m[KSmartsTable[m[Kâ has not been declared
>   static bool LoadFile(SmartsTable& smtable);
>[01;32m[K                        ^[m[K
>In file included from [01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/generic.cpp:30:0[m[K:
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:47:[m[K [01;31m[Kerror: [m[Kâ[01m[Kshared_ptr[m[Kâ was not declared in this scope
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                               ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:73:[m[K [01;31m[Kerror: [m[Ktemplate argument 2 is invalid
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                         ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:75:[m[K [01;31m[Kerror: [m[Ktemplate argument 1 is invalid
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                           ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:75:[m[K [01;31m[Kerror: [m[Ktemplate argument 2 is invalid
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:118:77:[m[K [01;31m[Kerror: [m[Kexpected unqualified-id before â[01m[K>[m[Kâ token
>   typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
>[01;32m[K                                                                             ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/include/openbabel/alias.h:119:24:[m[K [01;31m[Kerror: [m[Kâ[01m[KSmartsTable[m[Kâ has not been declared
>   static bool LoadFile(SmartsTable& smtable);
>[01;32m[K                        ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:239:26:[m[K [01;31m[Kerror: [m[Kâ[01m[Kbool OpenBabel::AliasData::LoadFile[m[Kâ is not a static data member of â[01m[Kclass OpenBabel::AliasData[m[Kâ
> bool AliasData::LoadFile(SmartsTable& smtable)
>[01;32m[K                          ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:239:26:[m[K [01;31m[Kerror: [m[Kâ[01m[KSmartsTable[m[Kâ was not declared in this scope
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:239:39:[m[K [01;31m[Kerror: [m[Kâ[01m[Ksmtable[m[Kâ was not declared in this scope
> bool AliasData::LoadFile(SmartsTable& smtable)
>[01;32m[K                                       ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:240:1:[m[K [01;31m[Kerror: [m[Kexpected â[01m[K,[m[Kâ or â[01m[K;[m[Kâ before â[01m[K{[m[Kâ token
> {
>[01;32m[K ^[m[K
>[01m[K/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/alias.cpp:396:1:[m[K [01;31m[Kerror: [m[Kexpected â[01m[K}[m[Kâ at end of input
> }//namespace
>[01;32m[K ^[m[K
>src/CMakeFiles/openbabel.dir/build.make:54: recipe for target 'src/CMakeFiles/openbabel.dir/alias.o' failed
>make[2]: *** [src/CMakeFiles/openbabel.dir/alias.o] Error 1
>make[2]: *** Waiting for unfinished jobs....
>src/CMakeFiles/openbabel.dir/build.make:422: recipe for target 'src/CMakeFiles/openbabel.dir/generic.o' failed
>make[2]: *** [src/CMakeFiles/openbabel.dir/generic.o] Error 1
>make[2]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>CMakeFiles/Makefile2:1000: recipe for target 'src/CMakeFiles/openbabel.dir/all' failed
>make[1]: *** [src/CMakeFiles/openbabel.dir/all] Error 2
>make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
>Makefile:126: recipe for target 'all' failed
>make: *** [all] Error 2
> * ERROR: sci-chemistry/openbabel-2.3.2::gentoo failed (compile phase):
> *   emake failed
> * 
> * If you need support, post the output of `emerge --info '=sci-chemistry/openbabel-2.3.2::gentoo'`,
> * the complete build log and the output of `emerge -pqv '=sci-chemistry/openbabel-2.3.2::gentoo'`.
> * The complete build log is located at '/var/log/portage/sci-chemistry:openbabel-2.3.2:20150623-152249.log'.
> * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/temp/build.log'.
> * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/temp/environment'.
> * Working directory: '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2_build'
> * S: '/var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2'
>ERROR: ld.so: object 'libsandbox.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored.

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Attachments on bug 553104: 405614