/var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/embassy-domainatrix-0.1.650_build/config.log

config.log (text/x-log), 66.73 KB, created by Juergen Rose on 2015-06-18 19:58:23 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by DOMAINATRIX configure 0.1.650, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/embassy-domainatrix-0.1.650 --enable-shared --disable-static --with-x --with-pngdriver=/usr --with-hpdf=/usr --with-mysql=/usr/bin/mysql_config --with-postgresql=/usr/bin/pg_config --enable-large --without-java --enable-systemlibs

## --------- ##
## Platform. ##
## --------- ##

hostname = lynx
uname -m = x86_64
uname -r = 4.0.5-gentoo
uname -s = Linux
uname -v = #1 SMP Sun Jun 7 22:00:13 CEST 2015

/usr/bin/uname -p = Intel(R) Core(TM) i7-3630QM CPU @ 2.40GHz
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib/portage/python2.7/ebuild-helpers/xattr
PATH: /usr/lib/portage/python2.7/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.9.2
PATH: /usr/x86_64-pc-linux-gnu/avr/gcc-bin/4.4.4
PATH: /opt/intel/composerxe-2015_update2.2.164/bin/intel64
PATH: /opt/intel/composerxe-2015_update2.2.164/mpirt/bin/intel64
PATH: /opt/intel/composerxe-2015_update2.2.164/bin/ia32
PATH: /opt/intel/composerxe-2015_update2.2.164/mpirt/bin/ia32
PATH: /opt/nvidia-cg-toolkit/bin
PATH: /usr/lib64/subversion/bin
PATH: /opt/eagle/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2448: loading site script /usr/share/config.site
| #!/bin/sh
| # Copyright 2009-2014 Gentoo Foundation
| # Distributed under the terms of the GNU General Public License v2
| 
| TOPDIR=/usr/share/crossdev/include/site
| 
| config_site_arch() {
| 	local host="${CHOST%%-*}"
| 
| 	case ${host} in
| 	arm*b*)  host=armeb ;;
| 	arm*)    host=arm ;;
| 	mips*l*) host=mipsel ;;
| 	mips*)   host=mips ;;
| 	esac
| 
| 	echo "${host}"
| }
| 
| config_site_names() {
| 	local site_arch="$(config_site_arch)"
| 	local sites=""
| 	local x
| 
| 	case ${CHOST} in
| 	*-linux-*)           sites="${sites} linux ${site_arch}-linux" ;;
| 	*-darwin*)           sites="${sites} darwin ${site_arch}-darwin" ;;
| 	esac
| 
| 	case ${CHOST} in
| 	*-linux-uclibc*)     sites="${sites} linux-uclibc ${site_arch}-linux-uclibc" ;;
| 	*-linux-gnu*)        sites="${sites} linux-gnu ${site_arch}-linux-gnu" ;;
| 	esac
| 
| 	case ${CHOST} in
| 	*-linux-uclibceabi*) sites="${sites} linux-uclibceabi ${site_arch}-linux-uclibceabi" ;;
| 	*-linux-gnueabi*)    sites="${sites} linux-gnueabi ${site_arch}-linux-gnueabi" ;;
| 	esac
| 
| 	for x in ${sites} ${CHOST}; do
| 		[ -e "${TOPDIR}/${x}" ] && echo "${TOPDIR}/${x}"
| 	done
| }
| 
| # Only kick in for cross-compiles so we don't break native builds #427184
| if [ "${CBUILD:-${CHOST}}" != "${CHOST}" ] ; then
| 	sites="$(config_site_names)"
| 	if [ -n "${sites}" ] ; then
| 		for site in ${sites}; do
| 			echo "${0##*/}: loading site script ${site}"
| 			. "${site}"
| 		done
| 	fi
| 	unset site sites
| fi
configure:2558: checking for gawk
configure:2574: found /usr/bin/gawk
configure:2585: result: gawk
configure:2606: checking for x86_64-pc-linux-gnu-icc
configure:2636: result: no
configure:2606: checking for x86_64-pc-linux-gnu-gcc
configure:2622: found /usr/bin/x86_64-pc-linux-gnu-gcc
configure:2633: result: x86_64-pc-linux-gnu-gcc
configure:2708: checking for C compiler version
configure:2717: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.9.2 p1.5, pie-0.6.2) 4.9.2
Copyright (C) 2014 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2728: $? = 0
configure:2717: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.9.2/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.9.2/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.9.2/work/gcc-4.9.2/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.9.2 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.2/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.2/include/g++-v4 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/python --enable-languages=c,c++,java,objc,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.9.2 p1.5, pie-0.6.2' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --enable-lto --without-cloog --enable-libsanitizer
Thread model: posix
gcc version 4.9.2 (Gentoo 4.9.2 p1.5, pie-0.6.2) 
configure:2728: $? = 0
configure:2717: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:2728: $? = 1
configure:2717: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:2728: $? = 1
configure:2748: checking whether the C compiler works
configure:2770: x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:2774: $? = 0
configure:2822: result: yes
configure:2825: checking for C compiler default output file name
configure:2827: result: a.out
configure:2833: checking for suffix of executables
configure:2840: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:2844: $? = 0
configure:2866: result: 
configure:2888: checking whether we are cross compiling
configure:2896: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:2900: $? = 0
configure:2907: ./conftest
configure:2911: $? = 0
configure:2926: result: no
configure:2931: checking for suffix of object files
configure:2953: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:2957: $? = 0
configure:2978: result: o
configure:2982: checking whether we are using the GNU C compiler
configure:3001: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:3001: $? = 0
configure:3010: result: yes
configure:3019: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:3039: x86_64-pc-linux-gnu-gcc -c -g  -I/usr/include/emboss conftest.c >&5
configure:3039: $? = 0
configure:3080: result: yes
configure:3097: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:3160: x86_64-pc-linux-gnu-gcc  -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:3160: $? = 0
configure:3173: result: none needed
configure:3230: checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together
configure:3252: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o
configure:3255: $? = 0
configure:3252: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o
configure:3255: $? = 0
configure:3267: result: yes
configure:3298: checking for x86_64-pc-linux-gnu-icpc
configure:3328: result: no
configure:3298: checking for x86_64-pc-linux-gnu-g++
configure:3314: found /usr/bin/x86_64-pc-linux-gnu-g++
configure:3325: result: x86_64-pc-linux-gnu-g++
configure:3396: checking for C++ compiler version
configure:3405: x86_64-pc-linux-gnu-g++ --version >&5
x86_64-pc-linux-gnu-g++ (Gentoo 4.9.2 p1.5, pie-0.6.2) 4.9.2
Copyright (C) 2014 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3416: $? = 0
configure:3405: x86_64-pc-linux-gnu-g++ -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.9.2/x86_64-pc-linux-gnu-g++
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.9.2/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.9.2/work/gcc-4.9.2/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.9.2 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.2/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.2/include/g++-v4 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.9.2/python --enable-languages=c,c++,java,objc,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.9.2 p1.5, pie-0.6.2' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --enable-lto --without-cloog --enable-libsanitizer
Thread model: posix
gcc version 4.9.2 (Gentoo 4.9.2 p1.5, pie-0.6.2) 
configure:3416: $? = 0
configure:3405: x86_64-pc-linux-gnu-g++ -V >&5
x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-g++: fatal error: no input files
compilation terminated.
configure:3416: $? = 1
configure:3405: x86_64-pc-linux-gnu-g++ -qversion >&5
x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-qversion'
x86_64-pc-linux-gnu-g++: fatal error: no input files
compilation terminated.
configure:3416: $? = 1
configure:3420: checking whether we are using the GNU C++ compiler
configure:3439: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include/emboss conftest.cpp >&5
configure:3439: $? = 0
configure:3448: result: yes
configure:3457: checking whether x86_64-pc-linux-gnu-g++ accepts -g
configure:3477: x86_64-pc-linux-gnu-g++ -c -g  -I/usr/include/emboss conftest.cpp >&5
configure:3477: $? = 0
configure:3518: result: yes
configure:3546: checking how to run the C preprocessor
configure:3577: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
configure:3577: $? = 0
configure:3591: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:3591: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:3616: result: x86_64-pc-linux-gnu-gcc -E
configure:3636: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
configure:3636: $? = 0
configure:3650: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:3650: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:3692: checking for a BSD-compatible install
configure:3760: result: /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c
configure:3771: checking whether ln -s works
configure:3775: result: yes
configure:3782: checking whether make sets $(MAKE)
configure:3804: result: yes
configure:3813: checking for a thread-safe mkdir -p
configure:3852: result: /bin/mkdir -p
configure:3858: checking whether build environment is sane
configure:3913: result: yes
configure:4082: checking for style of include used by make
configure:4110: result: GNU
configure:4144: checking whether make supports nested variables
configure:4161: result: yes
configure:4246: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:4357: result: none
configure:4374: checking dependency style of x86_64-pc-linux-gnu-g++
configure:4485: result: none
configure:4574: checking build system type
configure:4588: result: x86_64-pc-linux-gnu
configure:4608: checking host system type
configure:4621: result: x86_64-pc-linux-gnu
configure:4662: checking how to print strings
configure:4689: result: printf
configure:4710: checking for a sed that does not truncate output
configure:4774: result: /bin/sed
configure:4792: checking for grep that handles long lines and -e
configure:4850: result: /bin/grep
configure:4855: checking for egrep
configure:4917: result: /bin/grep -E
configure:4922: checking for fgrep
configure:4984: result: /bin/grep -F
configure:5019: checking for ld used by x86_64-pc-linux-gnu-gcc
configure:5086: result: /usr/x86_64-pc-linux-gnu/bin/ld
configure:5093: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld
configure:5108: result: yes
configure:5120: checking for BSD- or MS-compatible name lister (nm)
configure:5174: result: /usr/bin/x86_64-pc-linux-gnu-nm -B
configure:5304: checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface
configure:5311: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:5314: /usr/bin/x86_64-pc-linux-gnu-nm -B "conftest.o"
configure:5317: output
0000000000000000 B some_variable
configure:5324: result: BSD nm
configure:5328: checking the maximum length of command line arguments
configure:5459: result: 1572864
configure:5507: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5547: result: func_convert_file_noop
configure:5554: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5574: result: func_convert_file_noop
configure:5581: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files
configure:5588: result: -r
configure:5622: checking for x86_64-pc-linux-gnu-objdump
configure:5638: found /usr/bin/x86_64-pc-linux-gnu-objdump
configure:5649: result: x86_64-pc-linux-gnu-objdump
configure:5721: checking how to recognize dependent libraries
configure:5921: result: pass_all
configure:5966: checking for x86_64-pc-linux-gnu-dlltool
configure:5996: result: no
configure:6006: checking for dlltool
configure:6036: result: no
configure:6066: checking how to associate runtime and link libraries
configure:6093: result: printf %s\n
configure:6110: checking for x86_64-pc-linux-gnu-ar
configure:6126: found /usr/bin/x86_64-pc-linux-gnu-ar
configure:6137: result: x86_64-pc-linux-gnu-ar
configure:6218: checking for archiver @FILE support
configure:6235: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:6235: $? = 0
configure:6238: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
configure:6241: $? = 0
configure:6246: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory
configure:6249: $? = 1
configure:6261: result: @
configure:6279: checking for x86_64-pc-linux-gnu-strip
configure:6295: found /usr/bin/x86_64-pc-linux-gnu-strip
configure:6306: result: x86_64-pc-linux-gnu-strip
configure:6378: checking for x86_64-pc-linux-gnu-ranlib
configure:6394: found /usr/bin/x86_64-pc-linux-gnu-ranlib
configure:6405: result: x86_64-pc-linux-gnu-ranlib
configure:6547: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object
configure:6700: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:6703: $? = 0
configure:6707: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6710: $? = 0
configure:6776: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c conftstm.o >&5
configure:6779: $? = 0
configure:6817: result: ok
configure:6864: checking for sysroot
configure:6894: result: no
configure:6901: checking for a working dd
configure:6939: result: /bin/dd
configure:6943: checking how to truncate binary pipes
configure:6958: result: /bin/dd bs=4096 count=1
configure:7094: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:7097: $? = 0
configure:7247: checking for x86_64-pc-linux-gnu-mt
configure:7277: result: no
configure:7287: checking for mt
configure:7303: found /usr/sbin/mt
configure:7314: result: mt
configure:7337: checking if mt is a manifest tool
configure:7343: mt '-?'
usage: mt [-v] [--version] [-h] [ -f device ] command [ count ]
configure:7351: result: no
configure:8024: checking for ANSI C header files
configure:8044: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8044: $? = 0
configure:8117: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:8117: $? = 0
configure:8117: ./conftest
configure:8117: $? = 0
configure:8128: result: yes
configure:8141: checking for sys/types.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for sys/stat.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for stdlib.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for string.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for memory.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for strings.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for inttypes.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for stdint.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8141: checking for unistd.h
configure:8141: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8141: $? = 0
configure:8141: result: yes
configure:8155: checking for dlfcn.h
configure:8155: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:8155: $? = 0
configure:8155: result: yes
configure:8422: checking for objdir
configure:8437: result: .libs
configure:8701: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:8719: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:8723: $? = 0
configure:8736: result: no
configure:9094: checking for x86_64-pc-linux-gnu-gcc option to produce PIC
configure:9101: result: -fPIC -DPIC
configure:9109: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works
configure:9127: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss -fPIC -DPIC -DPIC conftest.c >&5
configure:9131: $? = 0
configure:9144: result: yes
configure:9173: checking if x86_64-pc-linux-gnu-gcc static flag -static works
configure:9201: result: yes
configure:9216: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:9237: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss -o out/conftest2.o conftest.c >&5
configure:9241: $? = 0
configure:9263: result: yes
configure:9271: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:9318: result: yes
configure:9351: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:10610: result: yes
configure:10647: checking whether -lc should be explicitly linked in
configure:10655: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe   -I/usr/include/emboss conftest.c >&5
configure:10658: $? = 0
configure:10673: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:10676: $? = 0
configure:10690: result: no
configure:10850: checking dynamic linker characteristics
configure:11444: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:11444: $? = 0
configure:11681: result: GNU/Linux ld.so
configure:11803: checking how to hardcode library paths into programs
configure:11828: result: immediate
configure:12376: checking whether stripping libraries is possible
configure:12381: result: yes
configure:12416: checking if libtool supports shared libraries
configure:12418: result: yes
configure:12421: checking whether to build shared libraries
configure:12446: result: yes
configure:12449: checking whether to build static libraries
configure:12453: result: no
configure:12476: checking how to run the C++ preprocessor
configure:12503: x86_64-pc-linux-gnu-g++ -E  -I/usr/include/emboss conftest.cpp
configure:12503: $? = 0
configure:12517: x86_64-pc-linux-gnu-g++ -E  -I/usr/include/emboss conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12517: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12542: result: x86_64-pc-linux-gnu-g++ -E
configure:12562: x86_64-pc-linux-gnu-g++ -E  -I/usr/include/emboss conftest.cpp
configure:12562: $? = 0
configure:12576: x86_64-pc-linux-gnu-g++ -E  -I/usr/include/emboss conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12576: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12738: checking for ld used by x86_64-pc-linux-gnu-g++
configure:12805: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
configure:12812: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld
configure:12827: result: yes
configure:12882: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:13955: result: yes
configure:13991: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include/emboss conftest.cpp >&5
configure:13994: $? = 0
configure:14475: checking for x86_64-pc-linux-gnu-g++ option to produce PIC
configure:14482: result: -fPIC -DPIC
configure:14490: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works
configure:14508: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include/emboss -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14512: $? = 0
configure:14525: result: yes
configure:14548: checking if x86_64-pc-linux-gnu-g++ static flag -static works
configure:14576: result: yes
configure:14588: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o
configure:14609: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include/emboss -o out/conftest2.o conftest.cpp >&5
configure:14613: $? = 0
configure:14635: result: yes
configure:14640: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o
configure:14687: result: yes
configure:14717: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:14757: result: yes
configure:14898: checking dynamic linker characteristics
configure:15656: result: GNU/Linux ld.so
configure:15721: checking how to hardcode library paths into programs
configure:15746: result: immediate
configure:16543: checking for X
configure:16682: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c -lX11  >&5
configure:16682: $? = 0
configure:16732: result: libraries , headers 
configure:16831: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c   -lX11 >&5
configure:16831: $? = 0
configure:16929: checking for gethostbyname
configure:16929: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:16929: $? = 0
configure:16929: result: yes
configure:17026: checking for connect
configure:17026: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:17026: $? = 0
configure:17026: result: yes
configure:17075: checking for remove
configure:17075: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:17075: $? = 0
configure:17075: result: yes
configure:17124: checking for shmat
configure:17124: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:17124: $? = 0
configure:17124: result: yes
configure:17182: checking for IceConnectionNumber in -lICE
configure:17207: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c -lICE   >&5
configure:17207: $? = 0
configure:17216: result: yes
configure:17229: checking for dirent.h that defines DIR
configure:17248: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17248: $? = 0
configure:17256: result: yes
configure:17269: checking for library containing opendir
configure:17300: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:17300: $? = 0
configure:17317: result: none required
configure:17384: checking for ANSI C header files
configure:17488: result: yes
configure:17500: checking for unistd.h
configure:17500: result: yes
configure:17500: checking TargetConfig.h usability
configure:17500: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c:59:26: fatal error: TargetConfig.h: No such file or directory
 #include <TargetConfig.h>
                          ^
compilation terminated.
configure:17500: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <TargetConfig.h>
configure:17500: result: no
configure:17500: checking TargetConfig.h presence
configure:17500: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
conftest.c:26:26: fatal error: TargetConfig.h: No such file or directory
 #include <TargetConfig.h>
                          ^
compilation terminated.
configure:17500: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <TargetConfig.h>
configure:17500: result: no
configure:17500: checking for TargetConfig.h
configure:17500: result: no
configure:17513: checking whether byte ordering is bigendian
configure:17528: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c:27:9: error: unknown type name 'not'
         not a universal capable compiler
         ^
conftest.c:27:15: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'universal'
         not a universal capable compiler
               ^
conftest.c:27:15: error: unknown type name 'universal'
configure:17528: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #ifndef __APPLE_CC__
| 	       not a universal capable compiler
| 	     #endif
| 	     typedef int dummy;
| 
configure:17573: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17573: $? = 0
configure:17591: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c: In function 'main':
conftest.c:33:4: error: unknown type name 'not'
    not big endian
    ^
conftest.c:33:12: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian'
    not big endian
            ^
configure:17591: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <sys/types.h>
| 		#include <sys/param.h>
| 
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| 		 not big endian
| 		#endif
| 
|   ;
|   return 0;
| }
configure:17719: result: no
configure:17737: checking for an ANSI C-conforming const
configure:17803: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17803: $? = 0
configure:17810: result: yes
configure:17818: checking for inline
configure:17834: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17834: $? = 0
configure:17842: result: inline
configure:17860: checking for pid_t
configure:17860: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17860: $? = 0
configure:17860: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c: In function 'main':
conftest.c:62:20: error: expected expression before ')' token
 if (sizeof ((pid_t)))
                    ^
configure:17860: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((pid_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:17860: result: yes
configure:17871: checking for size_t
configure:17871: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17871: $? = 0
configure:17871: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c: In function 'main':
conftest.c:62:21: error: expected expression before ')' token
 if (sizeof ((size_t)))
                     ^
configure:17871: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:17871: result: yes
configure:17882: checking whether struct tm is in sys/time.h or time.h
configure:17902: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
configure:17902: $? = 0
configure:17909: result: time.h
configure:17920: checking whether getpgrp requires zero arguments
configure:17937: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c: In function 'main':
conftest.c:62:1: error: too many arguments to function 'getpgrp'
 getpgrp (0);
 ^
In file included from conftest.c:57:0:
/usr/include/unistd.h:634:16: note: declared here
 extern __pid_t getpgrp (void) __THROW;
                ^
configure:17937: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| getpgrp (0);
|   ;
|   return 0;
| }
configure:17945: result: yes
configure:17955: checking for strftime
configure:17955: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:50:6: warning: conflicting types for built-in function 'strftime'
 char strftime ();
      ^
configure:17955: $? = 0
configure:17955: result: yes
configure:18010: checking vfork.h usability
configure:18010: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2  -I/usr/include/emboss conftest.c >&5
conftest.c:61:19: fatal error: vfork.h: No such file or directory
 #include <vfork.h>
                   ^
compilation terminated.
configure:18010: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| #define GETPGRP_VOID 1
| #define HAVE_STRFTIME 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <vfork.h>
configure:18010: result: no
configure:18010: checking vfork.h presence
configure:18010: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
conftest.c:28:19: fatal error: vfork.h: No such file or directory
 #include <vfork.h>
                   ^
compilation terminated.
configure:18010: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| #define GETPGRP_VOID 1
| #define HAVE_STRFTIME 1
| /* end confdefs.h.  */
| #include <vfork.h>
configure:18010: result: no
configure:18010: checking for vfork.h
configure:18010: result: no
configure:18023: checking for fork
configure:18023: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:51:6: warning: conflicting types for built-in function 'fork'
 char fork ();
      ^
configure:18023: $? = 0
configure:18023: result: yes
configure:18023: checking for vfork
configure:18023: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:18023: $? = 0
configure:18023: result: yes
configure:18033: checking for working fork
configure:18055: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:18055: $? = 0
configure:18055: ./conftest
configure:18055: $? = 0
configure:18065: result: yes
configure:18086: checking for working vfork
configure:18196: result: yes
configure:18223: checking for vprintf
configure:18223: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:55:6: warning: conflicting types for built-in function 'vprintf'
 char vprintf ();
      ^
configure:18223: $? = 0
configure:18223: result: yes
configure:18229: checking for _doprnt
configure:18229: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
/var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/temp/cclYVPTF.o: In function `main':
conftest.c:(.text.startup+0x7): undefined reference to `_doprnt'
collect2: error: ld returned 1 exit status
configure:18229: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "DOMAINATRIX"
| #define PACKAGE_TARNAME "DOMAINATRIX"
| #define PACKAGE_VERSION "0.1.650"
| #define PACKAGE_STRING "DOMAINATRIX 0.1.650"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL "http://emboss.open-bio.org/"
| #define PACKAGE "DOMAINATRIX"
| #define VERSION "0.1.650"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_UNISTD_H 1
| #define GETPGRP_VOID 1
| #define HAVE_STRFTIME 1
| #define HAVE_FORK 1
| #define HAVE_VFORK 1
| #define HAVE_WORKING_VFORK 1
| #define HAVE_WORKING_FORK 1
| #define HAVE_VPRINTF 1
| /* end confdefs.h.  */
| /* Define _doprnt to an innocuous variant, in case <limits.h> declares _doprnt.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define _doprnt innocuous__doprnt
| 
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char _doprnt (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
| 
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 
| #undef _doprnt
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char _doprnt ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub__doprnt || defined __stub____doprnt
| choke me
| #endif
| 
| int
| main ()
| {
| return _doprnt ();
|   ;
|   return 0;
| }
configure:18229: result: no
configure:18244: checking for strdup
configure:18244: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:56:6: warning: conflicting types for built-in function 'strdup'
 char strdup ();
      ^
configure:18244: $? = 0
configure:18244: result: yes
configure:18244: checking for strstr
configure:18244: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:57:6: warning: conflicting types for built-in function 'strstr'
 char strstr ();
      ^
configure:18244: $? = 0
configure:18244: result: yes
configure:18244: checking for strchr
configure:18244: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:58:6: warning: conflicting types for built-in function 'strchr'
 char strchr ();
      ^
configure:18244: $? = 0
configure:18244: result: yes
configure:18244: checking for erand48
configure:18244: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:18244: $? = 0
configure:18244: result: yes
configure:18244: checking for memmove
configure:18244: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c:60:6: warning: conflicting types for built-in function 'memmove'
 char memmove ();
      ^
configure:18244: $? = 0
configure:18244: result: yes
configure:18269: checking X11/Xlib.h usability
configure:18269: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -O2   -I/usr/include/emboss conftest.c >&5
configure:18269: $? = 0
configure:18269: result: yes
configure:18269: checking X11/Xlib.h presence
configure:18269: x86_64-pc-linux-gnu-gcc -E  -I/usr/include/emboss conftest.c
configure:18269: $? = 0
configure:18269: result: yes
configure:18269: checking for X11/Xlib.h
configure:18269: result: yes
configure:18307: checking for socket in -lc
configure:18332: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c -lc   >&5
configure:18332: $? = 0
configure:18341: result: yes
configure:18349: checking for main in -lm
configure:18368: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -Wl,-O1 -Wl,--as-needed conftest.c -lm   >&5
configure:18368: $? = 0
configure:18377: result: yes
configure:18461: checking if docroot is given
configure:18473: result: no
configure:18482: checking if gcc profiling is selected
configure:18495: result: no
configure:18511: checking for Java JNI
configure:18518: result: no
configure:18547: checking for Java JNI OS
configure:18573: result: no
configure:18581: checking for authorisation type
configure:18764: result: no
configure:18777: checking for threading type
configure:18855: result: no
configure:19084: checking whether to look for pdf support
configure:19090: result: yes
configure:19128: checking for HPDF_New in -lhpdf
configure:19153: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lhpdf -L/usr/lib -lm  >&5
configure:19153: $? = 0
configure:19162: result: yes
configure:19226: checking if png driver is wanted
configure:19232: result: yes
configure:19326: checking for inflateEnd in -lz
configure:19351: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lz -L/usr/lib -lz -lm  -lhpdf >&5
configure:19351: $? = 0
configure:19360: result: yes
configure:19374: checking for png_destroy_read_struct in -lpng
configure:19399: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lpng -L/usr/lib -lz -lm  -lhpdf >&5
configure:19399: $? = 0
configure:19408: result: yes
configure:19425: checking for gdImageCreateFromPng in -lgd
configure:19450: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2   -I/usr/include/emboss -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lgd -L/usr/lib -lgd -lpng -lz -lm -lm  -lhpdf >&5
configure:19450: $? = 0
configure:19459: result: yes
configure:19567: checking for mysql_config
configure:19598: result: /usr/bin/mysql_config
configure:19610: checking for MySQL libraries
configure:19638: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/mysql -I/usr/include/mysql/..  -I/usr/include/emboss -L/usr/lib64 -lmysqlclient -lpthread -lz -lm -lssl -lcrypto -ldl -Wl,-O1 -Wl,--as-needed conftest.c -lm  -lhpdf -lgd -lpng -lz -lm >&5
configure:19638: $? = 0
configure:19655: result: yes
configure:19761: checking for pg_config
configure:19792: result: /usr/bin/pg_config
configure:19804: checking for PostgreSQL libraries
configure:19832: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -O2  -I/usr/include/postgresql-9.0  -I/usr/include/emboss -L/usr/lib64/postgresql-9.0/lib64 -lpq -Wl,-O1 -Wl,--as-needed conftest.c -lm  -lhpdf -lgd -lpng -lz -lm >&5
configure:19832: $? = 0
configure:19849: result: yes
configure:20006: checking for large file support
configure:20062: result: yes
configure:20100: checking for x86_64-pc-linux-gnu-pkg-config
configure:20118: found /usr/bin/x86_64-pc-linux-gnu-pkg-config
configure:20130: result: /usr/bin/x86_64-pc-linux-gnu-pkg-config
configure:20198: checking pkg-config is at least version 0.9.0
configure:20201: result: yes
configure:20213: checking for PLPLOT
configure:20220: $PKG_CONFIG --exists --print-errors "plplotd"
Package plplotd was not found in the pkg-config search path.
Perhaps you should add the directory containing `plplotd.pc'
to the PKG_CONFIG_PATH environment variable
No package 'plplotd' found
configure:20223: $? = 1
configure:20237: $PKG_CONFIG --exists --print-errors "plplotd"
Package plplotd was not found in the pkg-config search path.
Perhaps you should add the directory containing `plplotd.pc'
to the PKG_CONFIG_PATH environment variable
No package 'plplotd' found
configure:20240: $? = 1
configure:20254: result: no
No package 'plplotd' found
configure:20270: error: Package requirements (plplotd) were not met:

No package 'plplotd' found

Consider adjusting the PKG_CONFIG_PATH environment variable if you
installed software in a non-standard prefix.

Alternatively, you may set the environment variables PLPLOT_CFLAGS
and PLPLOT_LIBS to avoid the need to call pkg-config.
See the pkg-config man page for more details.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_ANT_set=
ac_cv_env_ANT_value=
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-march=native -O2 -pipe'
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=' -I/usr/include/emboss'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_JAR_set=
ac_cv_env_JAR_value=
ac_cv_env_JAVAC_set=set
ac_cv_env_JAVAC_value=/etc/java-config-2/current-system-vm/bin/javac
ac_cv_env_JAVA_set=
ac_cv_env_JAVA_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_PKG_CONFIG_LIBDIR_set=
ac_cv_env_PKG_CONFIG_LIBDIR_value=
ac_cv_env_PKG_CONFIG_PATH_set=set
ac_cv_env_PKG_CONFIG_PATH_value=/usr/lib64/pkgconfig
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_PLPLOT_CFLAGS_set=
ac_cv_env_PLPLOT_CFLAGS_value=
ac_cv_env_PLPLOT_LIBS_set=
ac_cv_env_PLPLOT_LIBS_value=
ac_cv_env_XMKMF_set=
ac_cv_env_XMKMF_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=x86_64-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func__doprnt=no
ac_cv_func_connect=yes
ac_cv_func_erand48=yes
ac_cv_func_fork=yes
ac_cv_func_fork_works=yes
ac_cv_func_gethostbyname=yes
ac_cv_func_getpgrp_void=yes
ac_cv_func_memmove=yes
ac_cv_func_remove=yes
ac_cv_func_shmat=yes
ac_cv_func_strchr=yes
ac_cv_func_strdup=yes
ac_cv_func_strftime=yes
ac_cv_func_strstr=yes
ac_cv_func_vfork=yes
ac_cv_func_vfork_works=yes
ac_cv_func_vprintf=yes
ac_cv_have_x='have_x=yes	ac_x_includes='\'''\''	ac_x_libraries='\'''\'''
ac_cv_header_TargetConfig_h=no
ac_cv_header_X11_Xlib_h=yes
ac_cv_header_dirent_dirent_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_vfork_h=no
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_ICE_IceConnectionNumber=yes
ac_cv_lib_c_socket=yes
ac_cv_lib_gd_gdImageCreateFromPng=yes
ac_cv_lib_hpdf_HPDF_New=yes
ac_cv_lib_m_main=yes
ac_cv_lib_png_png_destroy_read_struct=yes
ac_cv_lib_z_inflateEnd=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_MYSQL_CONFIG=/usr/bin/mysql_config
ac_cv_path_PKG_CONFIG=/usr/bin/x86_64-pc-linux-gnu-pkg-config
ac_cv_path_POSTGRESQL_CONFIG=/usr/bin/pg_config
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=x86_64-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++
ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E'
ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump
ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_opendir='none required'
ac_cv_struct_tm=time.h
ac_cv_type_pid_t=yes
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld
lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/missing aclocal-1.15'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMPDF_FALSE='#'
AMPDF_TRUE=''
AMPNG_FALSE='#'
AMPNG_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
ANT=''
AR='x86_64-pc-linux-gnu-ar'
AUTOCONF='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/missing autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/missing autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/missing automake-1.15'
AWK='gawk'
CC='x86_64-pc-linux-gnu-gcc'
CCDEPMODE='depmode=none'
CFLAGS='-march=native -O2 -pipe  -O2 '
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=' -I/usr/include/emboss -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64'
CXX='x86_64-pc-linux-gnu-g++'
CXXCPP='x86_64-pc-linux-gnu-g++ -E'
CXXDEPMODE='depmode=none'
CXXFLAGS='-march=native -O2 -pipe'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DEVWARN_CFLAGS=''
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ESYSTEMLIBS_FALSE='#'
ESYSTEMLIBS_TRUE=''
EXEEXT=''
FGREP='/bin/grep -F'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
ISAIXIA64_FALSE=''
ISAIXIA64_TRUE=''
ISCYGWIN_FALSE=''
ISCYGWIN_TRUE=''
ISSHARED_FALSE=''
ISSHARED_TRUE=''
JAR=''
JAVA=''
JAVAC='/etc/java-config-2/current-system-vm/bin/javac'
JAVA_BUILD_FALSE=''
JAVA_BUILD_TRUE='#'
JAVA_CFLAGS=''
JAVA_CPPFLAGS=' -DNO_AUTH'
JAVA_LDFLAGS=''
LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-O1 -Wl,--as-needed'
LIBOBJS=''
LIBS='-lm  -lhpdf -lgd -lpng -lz -lm'
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LOCALLINK_FALSE=''
LOCALLINK_TRUE='#'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
MYSQL_CFLAGS='-I/usr/include/mysql -I/usr/include/mysql/..'
MYSQL_CONFIG='/usr/bin/mysql_config'
MYSQL_CPPFLAGS='-I/usr/include/mysql -I/usr/include/mysql/..'
MYSQL_LDFLAGS='-L/usr/lib64 -lmysqlclient -lpthread -lz -lm -lssl -lcrypto -ldl'
MYSQL_VERSION='10.0.19'
NEEDAJAX_FALSE=''
NEEDAJAX_TRUE=''
NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
NMEDIT=''
OBJDUMP='x86_64-pc-linux-gnu-objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='DOMAINATRIX'
PACKAGE_BUGREPORT='[e-mail]'
PACKAGE_NAME='DOMAINATRIX'
PACKAGE_STRING='DOMAINATRIX 0.1.650'
PACKAGE_TARNAME='DOMAINATRIX'
PACKAGE_URL='http://emboss.open-bio.org/'
PACKAGE_VERSION='0.1.650'
PATH_SEPARATOR=':'
PKG_CONFIG='/usr/bin/x86_64-pc-linux-gnu-pkg-config'
PKG_CONFIG_LIBDIR=''
PKG_CONFIG_PATH='/usr/lib64/pkgconfig'
PLPLOT_CFLAGS=''
PLPLOT_LIBS=''
POSTGRESQL_CFLAGS='-I/usr/include/postgresql-9.0'
POSTGRESQL_CONFIG='/usr/bin/pg_config'
POSTGRESQL_CPPFLAGS='-I/usr/include/postgresql-9.0'
POSTGRESQL_LDFLAGS='-L/usr/lib64/postgresql-9.0/lib64 -lpq'
POSTGRESQL_VERSION='9.0.18'
PURIFY_FALSE=''
PURIFY_TRUE=''
RANLIB='x86_64-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='x86_64-pc-linux-gnu-strip'
VERSION='0.1.650'
WARN_CFLAGS=''
XLIB=' -lX11 '
XMKMF=''
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=''
X_PRE_LIBS=' -lSM -lICE'
ac_ct_AR=''
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-pc-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='/usr/share/doc/embassy-domainatrix-0.1.650'
dvidir='${docdir}'
embprefix='/usr'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias='x86_64-pc-linux-gnu'
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='/usr/share/info'
install_sh='${SHELL} /var/tmp/portage/sci-biology/embassy-domainatrix-0.1.650/work/DOMAINATRIX-0.1.650/install-sh'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
mandir='/usr/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "DOMAINATRIX"
#define PACKAGE_TARNAME "DOMAINATRIX"
#define PACKAGE_VERSION "0.1.650"
#define PACKAGE_STRING "DOMAINATRIX 0.1.650"
#define PACKAGE_BUGREPORT "[e-mail]"
#define PACKAGE_URL "http://emboss.open-bio.org/"
#define PACKAGE "DOMAINATRIX"
#define VERSION "0.1.650"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_DIRENT_H 1
#define STDC_HEADERS 1
#define HAVE_UNISTD_H 1
#define GETPGRP_VOID 1
#define HAVE_STRFTIME 1
#define HAVE_FORK 1
#define HAVE_VFORK 1
#define HAVE_WORKING_VFORK 1
#define HAVE_WORKING_FORK 1
#define HAVE_VPRINTF 1
#define HAVE_STRDUP 1
#define HAVE_STRSTR 1
#define HAVE_STRCHR 1
#define HAVE_ERAND48 1
#define HAVE_MEMMOVE 1
#define PLD_xwin 1
#define HAVE_LIBM 1
#define PLD_pdf 1
#define PLD_png 1
#define HAVE_MYSQL 1
#define HAVE_POSTGRESQL 1

configure: exit 1