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Gentoo's Bugzilla – Attachment 403752 Details for
Bug 550148
=sci-biology/readseq: masked for removal
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build.log
build.log (text/x-log), 6.34 KB, created by
Martin Mokrejš
on 2015-05-22 09:11:23 UTC
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Description:
build.log
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MIME Type:
Creator:
Martin Mokrejš
Created:
2015-05-22 09:11:23 UTC
Size:
6.34 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-biology/readseq-20100513 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci-biology@gentoo.org >[32;01m * [39;49;00mUSE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU >[32;01m * [39;49;00mFEATURES: nostrip preserve-libs sandbox splitdebug userpriv usersandbox >/usr/portage/eclass/java-utils-2.eclass: line 294: USE: readonly variable >/usr/portage/eclass/java-utils-2.eclass: line 294: USE: readonly variable >/usr/portage/eclass/java-utils-2.eclass: line 294: USE: readonly variable > [32;01m*[0m Using: oracle-jdk-bin-1.8 >>>> Unpacking source... >>>> Unpacking readseq-20100513.zip to /var/tmp/portage/sci-biology/readseq-20100513/work >>>> Source unpacked in /var/tmp/portage/sci-biology/readseq-20100513/work >>>> Preparing source in /var/tmp/portage/sci-biology/readseq-20100513/work ... > [32;01m*[0m Applying 20080420-no-bundling.patch ... >[A[195C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/readseq-20100513/work ... >/var/tmp/portage/sci-biology/readseq-20100513/temp/environment: line 469: USE: readonly variable >/var/tmp/portage/sci-biology/readseq-20100513/temp/environment: line 469: USE: readonly variable >Rewriting attributes >Rewriting ./build.xml >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/readseq-20100513/work ... > [32;01m*[0m Disabling all optional ANT_TASKS >Buildfile: /var/tmp/portage/sci-biology/readseq-20100513/work/build.xml > >prepare: > [mkdir] Created dir: /var/tmp/portage/sci-biology/readseq-20100513/work/build > [mkdir] Created dir: /var/tmp/portage/sci-biology/readseq-20100513/work/build/classes > >compile: > [javac] Compiling 110 source files to /var/tmp/portage/sci-biology/readseq-20100513/work/build/classes > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:15: error: package sun.io does not exist > [javac] import sun.io.ByteToCharConverter; > [javac] ^ > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:16: error: package sun.io does not exist > [javac] import sun.io.CharToByteConverter; > [javac] ^ > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:118: error: cannot find symbol > [javac] ByteToCharConverter btc) > [javac] ^ > [javac] symbol: class ByteToCharConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:232: error: cannot find symbol > [javac] protected byte[] getBytes(CharToByteConverter ctb) { > [javac] ^ > [javac] symbol: class CharToByteConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:114: error: reference to OpenString is ambiguous > [javac] this(ascii, hibyte, 0, ascii.length); > [javac] ^ > [javac] both constructor OpenString(byte[],int,int,int) in OpenString and constructor OpenString(byte[],int,int,ByteToCharConverter) in OpenString match > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:143: error: cannot find symbol > [javac] this(bytes, offset, length, ByteToCharConverter.getConverter(enc)); > [javac] ^ > [javac] symbol: variable ByteToCharConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:153: error: cannot find symbol > [javac] this(bytes, offset, length, ByteToCharConverter.getDefault()); > [javac] ^ > [javac] symbol: variable ByteToCharConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:157: error: cannot find symbol > [javac] this(bytes, 0, bytes.length, ByteToCharConverter.getDefault()); > [javac] ^ > [javac] symbol: variable ByteToCharConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:260: error: cannot find symbol > [javac] return getBytes(CharToByteConverter.getConverter(enc)); > [javac] ^ > [javac] symbol: variable CharToByteConverter > [javac] location: class OpenString > [javac] /var/tmp/portage/sci-biology/readseq-20100513/work/src/flybase/OpenString.java:264: error: cannot find symbol > [javac] return getBytes(CharToByteConverter.getDefault()); > [javac] ^ > [javac] symbol: variable CharToByteConverter > [javac] location: class OpenString > [javac] 10 errors > >BUILD FAILED >/var/tmp/portage/sci-biology/readseq-20100513/work/build.xml:82: Compile failed; see the compiler error output for details. > >Total time: 5 seconds > [31;01m*[0m ERROR: sci-biology/readseq-20100513::gentoo failed (compile phase): > [31;01m*[0m eant failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 93: Called src_compile > [31;01m*[0m environment, line 3883: Called java-pkg-2_src_compile > [31;01m*[0m environment, line 1799: Called eant 'jar' '-f' 'build.xml' > [31;01m*[0m environment, line 592: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m ant ${antflags} "${@}" || die "eant failed" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-biology/readseq-20100513::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-biology/readseq-20100513::gentoo'`. >!!! When you file a bug report, please include the following information: >GENTOO_VM=oracle-jdk-bin-1.8 CLASSPATH="" JAVA_HOME="/opt/oracle-jdk-bin-1.8.0.45" >JAVACFLAGS="-source 1.4 -target 1.4" COMPILER="javac" >and of course, the output of emerge --info =readseq-20100513 > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-biology/readseq-20100513/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/readseq-20100513/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-biology/readseq-20100513/work' > [31;01m*[0m S: '/var/tmp/portage/sci-biology/readseq-20100513/work'
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bug 550148
: 403752